Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003020

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,416,084	+		ABIE53_003018	0.31	+0.5
3,416,084	+		ABIE53_003018	0.31	-0.5
3,416,085	-		ABIE53_003018	0.31	+0.7
3,416,237	+		ABIE53_003018	0.57	+1.8
3,416,237	+		ABIE53_003018	0.57	+1.8
3,416,237	+		ABIE53_003018	0.57	-0.1
3,416,237	+		ABIE53_003018	0.57	-2.1
3,416,237	+		ABIE53_003018	0.57	-0.8
3,416,237	+		ABIE53_003018	0.57	-1.2
3,416,237	+		ABIE53_003018	0.57	-0.5
3,416,237	+		ABIE53_003018	0.57	-1.2
3,416,237	+		ABIE53_003018	0.57	+1.7
3,416,237	+		ABIE53_003018	0.57	-0.6
3,416,237	+		ABIE53_003018	0.57	-1.6
3,416,238	-		ABIE53_003018	0.57	-2.5
3,416,238	-		ABIE53_003018	0.57	+0.2
3,416,238	-		ABIE53_003018	0.57	+0.1
3,416,238	-		ABIE53_003018	0.57	+0.7
3,416,238	-		ABIE53_003018	0.57	+0.2
3,416,238	-		ABIE53_003018	0.57	+0.2
3,416,327	+		ABIE53_003018	0.72	-1.3
3,416,327	+		ABIE53_003018	0.72	-0.7
3,416,327	+		ABIE53_003018	0.72	+1.4
3,416,328	-		ABIE53_003018	0.72	-0.9
3,416,328	-		ABIE53_003018	0.72	-0.9
3,416,360	+		ABIE53_003018	0.78	+1.2
3,416,360	+		ABIE53_003018	0.78	+1.0
3,416,360	+		ABIE53_003018	0.78	-2.1
3,416,360	+		ABIE53_003018	0.78	+1.7
3,416,360	+		ABIE53_003018	0.78	-1.2
3,416,361	-		ABIE53_003018	0.78	-0.8
3,416,361	-		ABIE53_003018	0.78	-1.6
3,416,361	-		ABIE53_003018	0.78	-0.4
3,416,361	-		ABIE53_003018	0.78	-0.7
3,416,361	-		ABIE53_003018	0.78	-0.3
3,416,361	-		ABIE53_003018	0.78	+0.7
3,416,361	-		ABIE53_003018	0.78	-2.8
3,416,361	-		ABIE53_003018	0.78	-1.8
3,416,361	-		ABIE53_003018	0.78	-0.8
3,416,362	-		ABIE53_003018	0.78	-0.6
3,416,387	+		ABIE53_003018	0.82	+2.7
3,416,387	+		ABIE53_003018	0.82	-0.1
3,416,387	+		ABIE53_003018	0.82	-0.8
3,416,387	+		ABIE53_003018	0.82	-1.1
3,416,387	+		ABIE53_003018	0.82	-1.5
3,416,387	+		ABIE53_003018	0.82	+0.2
3,416,388	-		ABIE53_003018	0.82	+2.8
3,416,388	-		ABIE53_003018	0.82	-1.3
3,416,388	-		ABIE53_003018	0.82	-0.1
3,416,388	-		ABIE53_003018	0.82	+0.2
3,416,388	-		ABIE53_003018	0.82	+1.8
3,416,388	-		ABIE53_003018	0.82	-0.6
3,416,388	-		ABIE53_003018	0.82	-0.3
3,416,391	+		ABIE53_003018	0.83	-0.3
3,416,391	+		ABIE53_003018	0.83	+1.2
3,416,391	+		ABIE53_003018	0.83	+0.8
3,416,391	+		ABIE53_003018	0.83	+2.5
3,416,391	+		ABIE53_003018	0.83	-0.9
3,416,391	+		ABIE53_003018	0.83	-3.1
3,416,391	+		ABIE53_003018	0.83	-0.2
3,416,391	+		ABIE53_003018	0.83	-1.4
3,416,391	+		ABIE53_003018	0.83	+0.7
3,416,391	+		ABIE53_003018	0.83	-1.8
3,416,391	+		ABIE53_003018	0.83	-0.3
3,416,391	+		ABIE53_003018	0.83	+0.2
3,416,391	+		ABIE53_003018	0.83	-0.9
3,416,391	+		ABIE53_003018	0.83	-0.3
3,416,392	-		ABIE53_003018	0.83	-1.1
3,416,392	-		ABIE53_003018	0.83	+0.2
3,416,392	-		ABIE53_003018	0.83	-1.6
3,416,392	-		ABIE53_003018	0.83	+0.2
3,416,392	-		ABIE53_003018	0.83	-2.1
3,416,392	-		ABIE53_003018	0.83	-1.0
3,416,392	-		ABIE53_003018	0.83	-1.8
3,416,536	+				-1.6
3,416,537	-				-2.0
3,416,537	-				-1.8
3,416,681	+		ABIE53_003019	0.37	-0.1
3,416,682	-		ABIE53_003019	0.37	-1.7
3,416,728	+		ABIE53_003019	0.46	-0.1
3,416,838	+		ABIE53_003019	0.69	-1.9
3,416,838	+		ABIE53_003019	0.69	-0.3
3,416,839	-		ABIE53_003019	0.69	-1.1
3,416,839	-		ABIE53_003019	0.69	-0.9
3,416,987	+				-0.3
3,416,987	+				+1.2
3,416,987	+				+0.2
3,416,988	-				-1.2
3,416,988	-				+0.0
3,416,988	-				-1.1
3,416,988	-				+2.2
3,416,988	-				+0.7
3,416,988	-				-1.0
3,417,020	+				+0.1
3,417,020	+				-0.2
3,417,020	+				+4.1
3,417,021	-				+0.4
3,417,021	-				+0.2
3,417,021	-				-1.1
3,417,021	-				-1.9
3,417,160	+		ABIE53_003020	0.17	-0.9
3,417,161	+		ABIE53_003020	0.17	-0.6
3,417,161	+		ABIE53_003020	0.17	-0.1
3,417,161	+		ABIE53_003020	0.17	-3.0
3,417,161	+		ABIE53_003020	0.17	-0.9
3,417,161	+		ABIE53_003020	0.17	-0.0
3,417,161	+		ABIE53_003020	0.17	+1.8
3,417,161	+		ABIE53_003020	0.17	-0.5
3,417,161	+		ABIE53_003020	0.17	+5.3
3,417,161	+		ABIE53_003020	0.17	+0.0
3,417,162	-		ABIE53_003020	0.17	+0.8
3,417,162	-		ABIE53_003020	0.17	-0.4
3,417,162	-		ABIE53_003020	0.17	-0.3
3,417,162	-		ABIE53_003020	0.17	+0.4
3,417,162	-		ABIE53_003020	0.17	+0.1
3,417,162	-		ABIE53_003020	0.17	-0.8
3,417,188	+		ABIE53_003020	0.20	-1.4
3,417,188	+		ABIE53_003020	0.20	+0.8
3,417,188	+		ABIE53_003020	0.20	-0.1
3,417,188	+		ABIE53_003020	0.20	-2.7
3,417,189	-		ABIE53_003020	0.20	-0.8
3,417,189	-		ABIE53_003020	0.20	+0.2
3,417,189	-		ABIE53_003020	0.20	+1.6
3,417,259	+		ABIE53_003020	0.28	-0.2
3,417,273	-		ABIE53_003020	0.29	-1.6
3,417,419	+		ABIE53_003020	0.45	-0.7
3,417,419	+		ABIE53_003020	0.45	-1.9
3,417,419	+		ABIE53_003020	0.45	-2.0
3,417,419	+		ABIE53_003020	0.45	-1.7
3,417,420	-		ABIE53_003020	0.45	-0.9
3,417,420	-		ABIE53_003020	0.45	+0.7
3,417,420	-		ABIE53_003020	0.45	-1.2
3,417,420	-		ABIE53_003020	0.45	+0.2
3,417,633	-		ABIE53_003020	0.69	+0.7
3,417,653	+		ABIE53_003020	0.71	-0.8
3,417,653	+		ABIE53_003020	0.71	-0.5
3,417,653	+		ABIE53_003020	0.71	+1.2
3,417,654	-		ABIE53_003020	0.71	-0.8
3,417,654	-		ABIE53_003020	0.71	-1.3
3,417,654	-		ABIE53_003020	0.71	+1.2
3,417,662	+		ABIE53_003020	0.72	-0.6
3,417,662	+		ABIE53_003020	0.72	+0.7
3,417,662	+		ABIE53_003020	0.72	+0.1
3,417,662	+		ABIE53_003020	0.72	+0.5
3,417,662	+		ABIE53_003020	0.72	-0.3
3,417,663	-		ABIE53_003020	0.72	-2.1
3,417,663	-		ABIE53_003020	0.72	+3.2
3,417,694	+		ABIE53_003020	0.75	+0.6
3,417,695	-		ABIE53_003020	0.75	-0.1
3,417,762	+		ABIE53_003020	0.83	-0.6
3,417,762	+		ABIE53_003020	0.83	+0.2
3,417,762	+		ABIE53_003020	0.83	-0.1
3,417,762	+		ABIE53_003020	0.83	+0.0
3,417,762	+		ABIE53_003020	0.83	-1.2
3,417,762	+		ABIE53_003020	0.83	-0.3
3,417,762	+		ABIE53_003020	0.83	-0.8
3,417,762	+		ABIE53_003020	0.83	+0.6
3,417,762	+		ABIE53_003020	0.83	-0.8
3,417,762	+		ABIE53_003020	0.83	-1.4
3,417,762	+		ABIE53_003020	0.83	-1.2
3,417,762	+		ABIE53_003020	0.83	-1.5
3,417,762	+		ABIE53_003020	0.83	-0.0
3,417,762	+		ABIE53_003020	0.83	+2.2
3,417,762	+		ABIE53_003020	0.83	+1.4
3,417,763	-		ABIE53_003020	0.83	-0.6
3,417,763	-		ABIE53_003020	0.83	+0.7
3,417,763	-		ABIE53_003020	0.83	-2.7
3,417,763	-		ABIE53_003020	0.83	+0.7
3,417,763	-		ABIE53_003020	0.83	+0.2
3,417,763	-		ABIE53_003020	0.83	-2.1
3,417,763	-		ABIE53_003020	0.83	-0.3
3,417,763	-		ABIE53_003020	0.83	-1.7
3,417,763	-		ABIE53_003020	0.83	+1.2
3,417,847	+				+0.0
3,417,847	+				-0.3
3,417,848	-				+2.2
3,417,928	+				+0.2
3,417,928	+				+2.2
3,417,928	+				-1.7
3,417,928	+				+0.4
3,417,928	+				+1.2
3,417,929	-				+1.0
3,417,929	-				+1.1
3,417,929	-				+1.2
3,417,929	-				+2.2
3,417,929	-				+0.7
3,417,929	-				+0.7
3,417,929	-				+2.2
3,417,929	-				-1.2
3,418,009	+				-0.9
3,418,009	+				+1.0
3,418,009	+				+0.9
3,418,009	+				-0.3
3,418,009	+				-0.8
3,418,009	+				-1.5
3,418,009	+				+0.3
3,418,009	+				-1.3
3,418,009	+				+0.8
3,418,009	+				-1.7
3,418,009	+				-0.1
3,418,009	+				+1.2
3,418,009	+				-0.0
3,418,010	-				-1.8
3,418,010	-				-0.6
3,418,010	-				+0.2
3,418,010	-				-1.1
3,418,010	-				-0.8
3,418,010	-				+0.4
3,418,010	-				-0.7
3,418,010	-				-0.1
3,418,010	-				-0.8
3,418,010	-				+0.3
3,418,013	+				+0.5
3,418,013	+				-1.8
3,418,013	+				-0.3
3,418,014	-				+0.7
3,418,014	-				+2.2
3,418,014	-				-0.3
3,418,014	-				-0.6
3,418,014	-				-1.2
3,418,014	-				-0.3
3,418,014	-				-0.8
3,418,138	-		ABIE53_003021	0.15	-1.3
3,418,138	-		ABIE53_003021	0.15	-0.9
3,418,138	-		ABIE53_003021	0.15	+2.4
3,418,201	+		ABIE53_003021	0.27	-0.6
3,418,201	+		ABIE53_003021	0.27	-1.3
3,418,202	-		ABIE53_003021	0.27	-1.4
3,418,323	+		ABIE53_003021	0.50	+1.9
3,418,437	+		ABIE53_003021	0.72	+0.5
3,418,437	+		ABIE53_003021	0.72	-0.3
3,418,437	+		ABIE53_003021	0.72	+0.1
3,418,438	-		ABIE53_003021	0.72	+1.1
3,418,438	-		ABIE53_003021	0.72	+0.8
3,418,491	+		ABIE53_003021	0.82	-1.2
3,418,491	+		ABIE53_003021	0.82	+0.2
3,418,492	-		ABIE53_003021	0.83	-1.1
3,418,492	-		ABIE53_003021	0.83	+0.7
3,418,492	-		ABIE53_003021	0.83	-0.6
3,418,492	-		ABIE53_003021	0.83	-1.0
3,418,492	-		ABIE53_003021	0.83	+0.5
3,418,594	+				-0.3
3,418,594	+				+1.5
3,418,595	-				-1.6
3,418,595	-				-1.1
3,418,595	-				+0.2
3,418,641	+				+0.3
3,418,642	-				-0.1
3,418,642	-				+1.4
3,418,661	+				-0.7
3,418,662	-				-0.9
3,418,662	-				-0.5
3,418,662	-				+1.5
3,418,716	+				+1.7
3,418,716	+				+0.2
3,418,716	+				+0.1
3,418,716	+				+3.5
3,418,717	-				+1.2
3,418,717	-				-0.6
3,418,717	-				-0.3
3,418,717	-				+1.6
3,418,717	-				-0.3
3,418,765	+				-0.3
3,418,765	+				-2.2
3,418,765	+				+0.3
3,418,765	+				+1.9
3,418,765	+				+0.2
3,418,765	+				+0.4
3,418,765	+				+0.9
3,418,766	-				+0.5
3,418,766	-				-1.7
3,418,766	-				+0.8
3,418,766	-				+2.3
3,418,766	-				+2.8
3,418,766	-				+2.1
3,418,766	-				-1.7
3,418,766	-				+0.1
3,418,825	+		ABIE53_003022	0.11	+1.8
3,418,826	-		ABIE53_003022	0.11	-0.7
3,418,826	-		ABIE53_003022	0.11	-1.0
3,418,859	-		ABIE53_003022	0.14	-0.3