Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002961

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_002960 and ABIE53_002961 are separated by 307 nucleotidesABIE53_002961 and ABIE53_002962 are separated by 146 nucleotides ABIE53_002960: ABIE53_002960 - threonine aldolase, at 3,348,470 to 3,349,501 _002960 ABIE53_002961: ABIE53_002961 - MFS family permease, at 3,349,809 to 3,351,152 _002961 ABIE53_002962: ABIE53_002962 - DNA-binding transcriptional LysR family regulator, at 3,351,299 to 3,352,273 _002962 Position (kb) 3349 3350 3351 3352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3348.994 kb on + strand, within ABIE53_002960at 3348.994 kb on + strand, within ABIE53_002960at 3348.994 kb on + strand, within ABIE53_002960at 3348.994 kb on + strand, within ABIE53_002960at 3348.994 kb on + strand, within ABIE53_002960at 3348.995 kb on - strand, within ABIE53_002960at 3348.995 kb on - strand, within ABIE53_002960at 3349.056 kb on + strand, within ABIE53_002960at 3349.057 kb on - strand, within ABIE53_002960at 3349.057 kb on - strand, within ABIE53_002960at 3349.057 kb on - strand, within ABIE53_002960at 3349.057 kb on - strand, within ABIE53_002960at 3349.275 kb on + strand, within ABIE53_002960at 3349.275 kb on + strand, within ABIE53_002960at 3349.275 kb on + strand, within ABIE53_002960at 3349.276 kb on - strand, within ABIE53_002960at 3349.276 kb on - strand, within ABIE53_002960at 3349.276 kb on - strand, within ABIE53_002960at 3349.476 kb on + strandat 3349.476 kb on + strandat 3349.476 kb on + strandat 3349.476 kb on + strandat 3349.476 kb on + strandat 3349.476 kb on + strandat 3349.477 kb on - strandat 3349.477 kb on - strandat 3349.477 kb on - strandat 3349.477 kb on - strandat 3349.477 kb on - strandat 3349.477 kb on - strandat 3349.556 kb on + strandat 3349.557 kb on - strandat 3349.582 kb on - strandat 3349.582 kb on - strandat 3349.643 kb on - strandat 3349.708 kb on + strandat 3349.987 kb on + strand, within ABIE53_002961at 3349.987 kb on + strand, within ABIE53_002961at 3349.987 kb on + strand, within ABIE53_002961at 3349.987 kb on + strand, within ABIE53_002961at 3349.988 kb on - strand, within ABIE53_002961at 3350.002 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.167 kb on + strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.168 kb on - strand, within ABIE53_002961at 3350.335 kb on + strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.356 kb on + strand, within ABIE53_002961at 3350.356 kb on + strand, within ABIE53_002961at 3350.356 kb on + strand, within ABIE53_002961at 3350.357 kb on - strand, within ABIE53_002961at 3350.357 kb on - strand, within ABIE53_002961at 3350.690 kb on + strand, within ABIE53_002961at 3350.692 kb on + strand, within ABIE53_002961at 3350.692 kb on + strand, within ABIE53_002961at 3350.692 kb on + strand, within ABIE53_002961at 3350.693 kb on - strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.933 kb on - strand, within ABIE53_002961at 3350.941 kb on + strand, within ABIE53_002961at 3350.942 kb on - strand, within ABIE53_002961at 3350.942 kb on - strand, within ABIE53_002961at 3351.224 kb on + strandat 3351.224 kb on + strandat 3351.225 kb on - strandat 3351.232 kb on + strandat 3351.232 kb on + strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.498 kb on - strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.765 kb on + strand, within ABIE53_002962at 3351.765 kb on + strand, within ABIE53_002962at 3351.765 kb on + strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.900 kb on - strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.962 kb on + strand, within ABIE53_002962at 3351.962 kb on + strand, within ABIE53_002962at 3351.963 kb on - strand, within ABIE53_002962at 3352.052 kb on - strand, within ABIE53_002962at 3352.052 kb on - strand, within ABIE53_002962at 3352.052 kb on - strand, within ABIE53_002962

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
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3,348,994 + ABIE53_002960 0.51 +0.4
3,348,994 + ABIE53_002960 0.51 +0.3
3,348,994 + ABIE53_002960 0.51 -0.9
3,348,994 + ABIE53_002960 0.51 -0.1
3,348,994 + ABIE53_002960 0.51 +0.7
3,348,995 - ABIE53_002960 0.51 +0.7
3,348,995 - ABIE53_002960 0.51 +1.5
3,349,056 + ABIE53_002960 0.57 -0.5
3,349,057 - ABIE53_002960 0.57 +0.7
3,349,057 - ABIE53_002960 0.57 -0.1
3,349,057 - ABIE53_002960 0.57 +0.2
3,349,057 - ABIE53_002960 0.57 -0.1
3,349,275 + ABIE53_002960 0.78 -1.8
3,349,275 + ABIE53_002960 0.78 +0.1
3,349,275 + ABIE53_002960 0.78 +1.5
3,349,276 - ABIE53_002960 0.78 -0.8
3,349,276 - ABIE53_002960 0.78 -2.4
3,349,276 - ABIE53_002960 0.78 +0.5
3,349,476 + -0.6
3,349,476 + -0.9
3,349,476 + +2.2
3,349,476 + +0.0
3,349,476 + -0.8
3,349,476 + -1.7
3,349,477 - -1.5
3,349,477 - -0.5
3,349,477 - +2.6
3,349,477 - -1.2
3,349,477 - -2.8
3,349,477 - -1.8
3,349,556 + -0.3
3,349,557 - +0.5
3,349,582 - +0.7
3,349,582 - -0.8
3,349,643 - -0.9
3,349,708 + -0.4
3,349,987 + ABIE53_002961 0.13 -1.1
3,349,987 + ABIE53_002961 0.13 -2.7
3,349,987 + ABIE53_002961 0.13 +0.8
3,349,987 + ABIE53_002961 0.13 -2.4
3,349,988 - ABIE53_002961 0.13 +1.8
3,350,002 + ABIE53_002961 0.14 -1.7
3,350,167 + ABIE53_002961 0.27 +1.2
3,350,167 + ABIE53_002961 0.27 -1.3
3,350,167 + ABIE53_002961 0.27 -2.1
3,350,167 + ABIE53_002961 0.27 +0.1
3,350,167 + ABIE53_002961 0.27 -2.1
3,350,167 + ABIE53_002961 0.27 +1.2
3,350,167 + ABIE53_002961 0.27 -0.5
3,350,168 - ABIE53_002961 0.27 +2.0
3,350,168 - ABIE53_002961 0.27 -1.7
3,350,168 - ABIE53_002961 0.27 +1.1
3,350,168 - ABIE53_002961 0.27 -0.9
3,350,168 - ABIE53_002961 0.27 -1.3
3,350,168 - ABIE53_002961 0.27 +0.7
3,350,168 - ABIE53_002961 0.27 -0.1
3,350,168 - ABIE53_002961 0.27 +0.2
3,350,168 - ABIE53_002961 0.27 +0.4
3,350,168 - ABIE53_002961 0.27 -0.3
3,350,168 - ABIE53_002961 0.27 +1.2
3,350,168 - ABIE53_002961 0.27 +1.2
3,350,168 - ABIE53_002961 0.27 -0.6
3,350,168 - ABIE53_002961 0.27 +2.6
3,350,168 - ABIE53_002961 0.27 -0.3
3,350,168 - ABIE53_002961 0.27 -0.5
3,350,168 - ABIE53_002961 0.27 +1.4
3,350,168 - ABIE53_002961 0.27 -0.1
3,350,335 + ABIE53_002961 0.39 +1.2
3,350,336 - ABIE53_002961 0.39 +0.1
3,350,336 - ABIE53_002961 0.39 -0.2
3,350,336 - ABIE53_002961 0.39 +1.2
3,350,336 - ABIE53_002961 0.39 +0.3
3,350,356 + ABIE53_002961 0.41 -0.5
3,350,356 + ABIE53_002961 0.41 +2.8
3,350,356 + ABIE53_002961 0.41 -0.6
3,350,357 - ABIE53_002961 0.41 -0.8
3,350,357 - ABIE53_002961 0.41 -1.3
3,350,690 + ABIE53_002961 0.66 -0.0
3,350,692 + ABIE53_002961 0.66 -0.2
3,350,692 + ABIE53_002961 0.66 -1.1
3,350,692 + ABIE53_002961 0.66 -0.8
3,350,693 - ABIE53_002961 0.66 -1.8
3,350,932 + ABIE53_002961 0.84 -1.9
3,350,932 + ABIE53_002961 0.84 +2.2
3,350,932 + ABIE53_002961 0.84 -2.0
3,350,932 + ABIE53_002961 0.84 +1.7
3,350,933 - ABIE53_002961 0.84 -0.6
3,350,941 + ABIE53_002961 0.84 -0.9
3,350,942 - ABIE53_002961 0.84 -0.5
3,350,942 - ABIE53_002961 0.84 +1.8
3,351,224 + -0.7
3,351,224 + -0.6
3,351,225 - -0.8
3,351,232 + +0.7
3,351,232 + -0.9
3,351,233 - -1.5
3,351,233 - +0.4
3,351,233 - +0.9
3,351,233 - +1.3
3,351,233 - +1.2
3,351,235 + +0.4
3,351,235 + +0.8
3,351,235 + -1.5
3,351,235 + -1.3
3,351,235 + +1.2
3,351,235 + -0.1
3,351,235 + -0.6
3,351,235 + -0.8
3,351,235 + -0.9
3,351,235 + +1.7
3,351,235 + -1.0
3,351,235 + +0.6
3,351,235 + +1.2
3,351,235 + -0.7
3,351,235 + +0.7
3,351,235 + -0.9
3,351,235 + -2.0
3,351,236 - +1.2
3,351,236 - -1.0
3,351,236 - -0.8
3,351,236 - +2.1
3,351,236 - -1.6
3,351,236 - -0.1
3,351,236 - -0.7
3,351,236 - +1.5
3,351,236 - -0.3
3,351,236 - -0.3
3,351,236 - +1.5
3,351,236 - +1.0
3,351,236 - +1.4
3,351,236 - -0.6
3,351,236 - -0.3
3,351,498 - ABIE53_002962 0.20 +2.7
3,351,629 + ABIE53_002962 0.34 -1.7
3,351,629 + ABIE53_002962 0.34 +1.1
3,351,629 + ABIE53_002962 0.34 -0.8
3,351,629 + ABIE53_002962 0.34 +0.2
3,351,629 + ABIE53_002962 0.34 +1.5
3,351,630 - ABIE53_002962 0.34 -0.3
3,351,630 - ABIE53_002962 0.34 +0.8
3,351,630 - ABIE53_002962 0.34 +0.0
3,351,630 - ABIE53_002962 0.34 +0.5
3,351,630 - ABIE53_002962 0.34 -0.1
3,351,630 - ABIE53_002962 0.34 -1.4
3,351,734 - ABIE53_002962 0.45 -0.2
3,351,734 - ABIE53_002962 0.45 +1.7
3,351,734 - ABIE53_002962 0.45 +0.0
3,351,734 - ABIE53_002962 0.45 -0.1
3,351,765 + ABIE53_002962 0.48 +1.4
3,351,765 + ABIE53_002962 0.48 -0.8
3,351,765 + ABIE53_002962 0.48 +0.2
3,351,766 - ABIE53_002962 0.48 -2.1
3,351,766 - ABIE53_002962 0.48 -2.2
3,351,766 - ABIE53_002962 0.48 +0.8
3,351,766 - ABIE53_002962 0.48 -0.1
3,351,766 - ABIE53_002962 0.48 +1.3
3,351,766 - ABIE53_002962 0.48 -0.1
3,351,899 + ABIE53_002962 0.62 +4.4
3,351,899 + ABIE53_002962 0.62 +0.3
3,351,899 + ABIE53_002962 0.62 -1.3
3,351,899 + ABIE53_002962 0.62 -0.6
3,351,899 + ABIE53_002962 0.62 -2.3
3,351,899 + ABIE53_002962 0.62 -0.1
3,351,900 - ABIE53_002962 0.62 +2.8
3,351,914 + ABIE53_002962 0.63 -0.6
3,351,914 + ABIE53_002962 0.63 +1.7
3,351,914 + ABIE53_002962 0.63 -0.1
3,351,914 + ABIE53_002962 0.63 -0.2
3,351,915 - ABIE53_002962 0.63 +0.7
3,351,915 - ABIE53_002962 0.63 -1.2
3,351,915 - ABIE53_002962 0.63 -0.6
3,351,915 - ABIE53_002962 0.63 -0.1
3,351,962 + ABIE53_002962 0.68 +2.2
3,351,962 + ABIE53_002962 0.68 -0.8
3,351,963 - ABIE53_002962 0.68 -1.2
3,352,052 - ABIE53_002962 0.77 -1.5
3,352,052 - ABIE53_002962 0.77 +1.8
3,352,052 - ABIE53_002962 0.77 +0.7

Or see this region's nucleotide sequence