Experiment: malate (C) and Ammonium chloride (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04085 and PFLU_RS04090 overlap by 1 nucleotides PFLU_RS04090 and PFLU_RS04095 are separated by 10 nucleotides PFLU_RS04095 and PFLU_RS04100 are separated by 10 nucleotides
PFLU_RS04085: PFLU_RS04085 - ABC transporter ATP-binding protein, at 925,072 to 926,043
_RS04085
PFLU_RS04090: PFLU_RS04090 - ABC transporter ATP-binding protein, at 926,043 to 927,011
_RS04090
PFLU_RS04095: PFLU_RS04095 - ABC transporter permease subunit, at 927,022 to 927,933
_RS04095
PFLU_RS04100: PFLU_RS04100 - ABC transporter permease subunit, at 927,944 to 928,954
_RS04100
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 925.073 kb on + strand at 925.073 kb on + strand at 925.073 kb on + strand at 925.074 kb on - strand at 925.074 kb on - strand at 925.116 kb on + strand at 925.166 kb on + strand at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.604 kb on + strand, within PFLU_RS04085 at 925.604 kb on + strand, within PFLU_RS04085 at 925.605 kb on - strand, within PFLU_RS04085 at 925.742 kb on + strand, within PFLU_RS04085 at 925.743 kb on - strand, within PFLU_RS04085 at 925.743 kb on - strand, within PFLU_RS04085 at 925.906 kb on + strand, within PFLU_RS04085 at 925.906 kb on + strand, within PFLU_RS04085 at 925.963 kb on + strand at 925.964 kb on - strand at 925.964 kb on - strand at 926.003 kb on + strand at 926.003 kb on + strand at 926.004 kb on - strand at 926.045 kb on - strand at 926.068 kb on + strand at 926.068 kb on + strand at 926.069 kb on - strand at 926.069 kb on - strand at 926.069 kb on - strand at 926.069 kb on - strand at 926.140 kb on + strand, within PFLU_RS04090 at 926.140 kb on + strand, within PFLU_RS04090 at 926.140 kb on + strand, within PFLU_RS04090 at 926.140 kb on + strand, within PFLU_RS04090 at 926.141 kb on - strand, within PFLU_RS04090 at 926.141 kb on - strand, within PFLU_RS04090 at 926.141 kb on - strand, within PFLU_RS04090 at 926.141 kb on - strand, within PFLU_RS04090 at 926.183 kb on - strand, within PFLU_RS04090 at 926.269 kb on + strand, within PFLU_RS04090 at 926.270 kb on - strand, within PFLU_RS04090 at 926.332 kb on + strand, within PFLU_RS04090 at 926.332 kb on + strand, within PFLU_RS04090 at 926.332 kb on + strand, within PFLU_RS04090 at 926.333 kb on - strand, within PFLU_RS04090 at 926.333 kb on - strand, within PFLU_RS04090 at 926.543 kb on + strand, within PFLU_RS04090 at 926.567 kb on - strand, within PFLU_RS04090 at 926.698 kb on + strand, within PFLU_RS04090 at 926.698 kb on + strand, within PFLU_RS04090 at 926.698 kb on + strand, within PFLU_RS04090 at 926.699 kb on - strand, within PFLU_RS04090 at 926.699 kb on - strand, within PFLU_RS04090 at 926.699 kb on - strand, within PFLU_RS04090 at 926.699 kb on - strand, within PFLU_RS04090 at 926.734 kb on - strand, within PFLU_RS04090 at 926.930 kb on + strand at 926.930 kb on + strand at 926.930 kb on + strand at 926.931 kb on - strand at 926.931 kb on - strand at 927.000 kb on + strand at 927.000 kb on + strand at 927.001 kb on - strand at 927.001 kb on - strand at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.149 kb on + strand, within PFLU_RS04095 at 927.150 kb on - strand, within PFLU_RS04095 at 927.150 kb on - strand, within PFLU_RS04095 at 927.150 kb on - strand, within PFLU_RS04095 at 927.150 kb on - strand, within PFLU_RS04095 at 927.150 kb on - strand, within PFLU_RS04095 at 927.150 kb on - strand, within PFLU_RS04095 at 927.199 kb on + strand, within PFLU_RS04095 at 927.199 kb on + strand, within PFLU_RS04095 at 927.199 kb on + strand, within PFLU_RS04095 at 927.199 kb on + strand, within PFLU_RS04095 at 927.200 kb on - strand, within PFLU_RS04095 at 927.200 kb on - strand, within PFLU_RS04095 at 927.200 kb on - strand, within PFLU_RS04095 at 927.200 kb on - strand, within PFLU_RS04095 at 927.291 kb on + strand, within PFLU_RS04095 at 927.292 kb on - strand, within PFLU_RS04095 at 927.292 kb on - strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.356 kb on + strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.357 kb on - strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.404 kb on + strand, within PFLU_RS04095 at 927.405 kb on - strand, within PFLU_RS04095 at 927.405 kb on - strand, within PFLU_RS04095 at 927.405 kb on - strand, within PFLU_RS04095 at 927.405 kb on - strand, within PFLU_RS04095 at 927.405 kb on - strand, within PFLU_RS04095 at 927.405 kb on - strand, within PFLU_RS04095 at 927.648 kb on + strand, within PFLU_RS04095 at 927.648 kb on + strand, within PFLU_RS04095 at 927.649 kb on - strand, within PFLU_RS04095 at 927.649 kb on - strand, within PFLU_RS04095 at 927.649 kb on - strand, within PFLU_RS04095 at 927.759 kb on + strand, within PFLU_RS04095 at 927.888 kb on - strand at 927.888 kb on - strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.921 kb on + strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.922 kb on - strand at 927.981 kb on + strand at 927.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with TAPS remove 925,073 + -0.5 925,073 + +0.3 925,073 + +0.5 925,074 - -0.6 925,074 - -1.4 925,116 + +1.0 925,166 + -0.5 925,299 - PFLU_RS04085 0.23 -0.1 925,299 - PFLU_RS04085 0.23 +0.4 925,299 - PFLU_RS04085 0.23 -0.1 925,299 - PFLU_RS04085 0.23 -0.1 925,299 - PFLU_RS04085 0.23 +0.7 925,299 - PFLU_RS04085 0.23 -1.6 925,319 + PFLU_RS04085 0.25 +0.6 925,319 + PFLU_RS04085 0.25 -0.8 925,319 + PFLU_RS04085 0.25 +0.6 925,319 + PFLU_RS04085 0.25 -2.1 925,319 + PFLU_RS04085 0.25 +1.1 925,319 + PFLU_RS04085 0.25 +1.8 925,319 + PFLU_RS04085 0.25 -0.4 925,319 + PFLU_RS04085 0.25 -0.4 925,320 - PFLU_RS04085 0.26 +0.7 925,320 - PFLU_RS04085 0.26 +0.2 925,320 - PFLU_RS04085 0.26 -0.5 925,320 - PFLU_RS04085 0.26 -1.6 925,320 - PFLU_RS04085 0.26 -0.8 925,320 - PFLU_RS04085 0.26 +0.1 925,361 + PFLU_RS04085 0.30 +1.0 925,361 + PFLU_RS04085 0.30 +3.1 925,361 + PFLU_RS04085 0.30 -0.2 925,361 + PFLU_RS04085 0.30 +0.4 925,361 + PFLU_RS04085 0.30 +0.6 925,361 + PFLU_RS04085 0.30 -0.8 925,361 + PFLU_RS04085 0.30 -0.5 925,361 + PFLU_RS04085 0.30 +1.3 925,361 + PFLU_RS04085 0.30 -0.9 925,361 + PFLU_RS04085 0.30 -1.6 925,361 + PFLU_RS04085 0.30 -1.0 925,361 + PFLU_RS04085 0.30 -1.4 925,361 + PFLU_RS04085 0.30 +0.4 925,361 + PFLU_RS04085 0.30 -1.4 925,362 - PFLU_RS04085 0.30 -0.5 925,362 - PFLU_RS04085 0.30 +0.4 925,362 - PFLU_RS04085 0.30 -0.1 925,362 - PFLU_RS04085 0.30 +0.7 925,362 - PFLU_RS04085 0.30 +1.0 925,362 - PFLU_RS04085 0.30 -1.0 925,362 - PFLU_RS04085 0.30 -1.0 925,362 - PFLU_RS04085 0.30 -0.4 925,424 + PFLU_RS04085 0.36 +0.9 925,424 + PFLU_RS04085 0.36 +1.7 925,424 + PFLU_RS04085 0.36 +0.7 925,424 + PFLU_RS04085 0.36 +0.4 925,424 + PFLU_RS04085 0.36 +0.4 925,424 + PFLU_RS04085 0.36 -0.4 925,425 - PFLU_RS04085 0.36 -0.3 925,425 - PFLU_RS04085 0.36 +1.2 925,425 - PFLU_RS04085 0.36 +0.4 925,425 - PFLU_RS04085 0.36 -1.4 925,425 - PFLU_RS04085 0.36 +0.1 925,425 - PFLU_RS04085 0.36 -0.1 925,425 - PFLU_RS04085 0.36 -1.6 925,425 - PFLU_RS04085 0.36 -1.1 925,604 + PFLU_RS04085 0.55 +0.2 925,604 + PFLU_RS04085 0.55 -0.7 925,605 - PFLU_RS04085 0.55 +0.2 925,742 + PFLU_RS04085 0.69 -0.6 925,743 - PFLU_RS04085 0.69 +0.1 925,743 - PFLU_RS04085 0.69 -0.9 925,906 + PFLU_RS04085 0.86 +1.0 925,906 + PFLU_RS04085 0.86 -0.5 925,963 + +2.0 925,964 - +0.4 925,964 - -0.5 926,003 + +0.1 926,003 + -0.1 926,004 - +2.4 926,045 - -0.2 926,068 + -0.9 926,068 + +0.5 926,069 - -0.5 926,069 - -0.4 926,069 - +0.1 926,069 - -0.1 926,140 + PFLU_RS04090 0.10 +0.9 926,140 + PFLU_RS04090 0.10 +0.4 926,140 + PFLU_RS04090 0.10 +0.2 926,140 + PFLU_RS04090 0.10 +0.7 926,141 - PFLU_RS04090 0.10 -0.3 926,141 - PFLU_RS04090 0.10 -1.2 926,141 - PFLU_RS04090 0.10 -2.8 926,141 - PFLU_RS04090 0.10 -0.4 926,183 - PFLU_RS04090 0.14 -1.2 926,269 + PFLU_RS04090 0.23 +0.7 926,270 - PFLU_RS04090 0.23 +0.6 926,332 + PFLU_RS04090 0.30 +1.5 926,332 + PFLU_RS04090 0.30 +0.0 926,332 + PFLU_RS04090 0.30 -2.2 926,333 - PFLU_RS04090 0.30 -0.6 926,333 - PFLU_RS04090 0.30 -0.4 926,543 + PFLU_RS04090 0.52 -2.9 926,567 - PFLU_RS04090 0.54 +0.0 926,698 + PFLU_RS04090 0.68 -2.2 926,698 + PFLU_RS04090 0.68 +0.2 926,698 + PFLU_RS04090 0.68 +0.7 926,699 - PFLU_RS04090 0.68 +0.7 926,699 - PFLU_RS04090 0.68 -0.2 926,699 - PFLU_RS04090 0.68 -1.1 926,699 - PFLU_RS04090 0.68 -1.0 926,734 - PFLU_RS04090 0.71 +0.4 926,930 + +0.8 926,930 + +0.6 926,930 + +0.9 926,931 - +0.3 926,931 - +0.2 927,000 + +0.7 927,000 + +1.9 927,001 - +0.4 927,001 - +0.4 927,149 + PFLU_RS04095 0.14 +1.3 927,149 + PFLU_RS04095 0.14 -0.8 927,149 + PFLU_RS04095 0.14 -2.2 927,149 + PFLU_RS04095 0.14 -0.5 927,149 + PFLU_RS04095 0.14 +0.9 927,149 + PFLU_RS04095 0.14 +0.3 927,149 + PFLU_RS04095 0.14 +0.6 927,149 + PFLU_RS04095 0.14 +0.3 927,150 - PFLU_RS04095 0.14 -1.3 927,150 - PFLU_RS04095 0.14 -0.7 927,150 - PFLU_RS04095 0.14 +0.2 927,150 - PFLU_RS04095 0.14 +0.6 927,150 - PFLU_RS04095 0.14 +0.6 927,150 - PFLU_RS04095 0.14 -0.6 927,199 + PFLU_RS04095 0.19 -0.1 927,199 + PFLU_RS04095 0.19 +1.1 927,199 + PFLU_RS04095 0.19 -0.1 927,199 + PFLU_RS04095 0.19 +0.6 927,200 - PFLU_RS04095 0.20 +0.1 927,200 - PFLU_RS04095 0.20 +0.5 927,200 - PFLU_RS04095 0.20 -1.3 927,200 - PFLU_RS04095 0.20 -1.3 927,291 + PFLU_RS04095 0.29 +0.1 927,292 - PFLU_RS04095 0.30 +0.3 927,292 - PFLU_RS04095 0.30 -0.2 927,356 + PFLU_RS04095 0.37 -0.2 927,356 + PFLU_RS04095 0.37 -1.3 927,356 + PFLU_RS04095 0.37 +0.7 927,356 + PFLU_RS04095 0.37 -0.6 927,356 + PFLU_RS04095 0.37 +0.4 927,356 + PFLU_RS04095 0.37 -0.0 927,356 + PFLU_RS04095 0.37 +0.2 927,357 - PFLU_RS04095 0.37 -0.4 927,357 - PFLU_RS04095 0.37 +0.7 927,357 - PFLU_RS04095 0.37 -0.6 927,357 - PFLU_RS04095 0.37 +0.1 927,357 - PFLU_RS04095 0.37 +1.2 927,357 - PFLU_RS04095 0.37 -0.2 927,357 - PFLU_RS04095 0.37 -0.2 927,357 - PFLU_RS04095 0.37 -0.7 927,357 - PFLU_RS04095 0.37 +0.0 927,357 - PFLU_RS04095 0.37 -0.6 927,404 + PFLU_RS04095 0.42 -0.4 927,404 + PFLU_RS04095 0.42 -0.0 927,404 + PFLU_RS04095 0.42 -1.2 927,404 + PFLU_RS04095 0.42 -0.6 927,404 + PFLU_RS04095 0.42 -1.4 927,404 + PFLU_RS04095 0.42 -0.3 927,404 + PFLU_RS04095 0.42 -0.6 927,404 + PFLU_RS04095 0.42 +0.8 927,404 + PFLU_RS04095 0.42 +1.4 927,404 + PFLU_RS04095 0.42 +0.7 927,404 + PFLU_RS04095 0.42 -0.1 927,404 + PFLU_RS04095 0.42 -0.6 927,405 - PFLU_RS04095 0.42 +0.3 927,405 - PFLU_RS04095 0.42 -1.2 927,405 - PFLU_RS04095 0.42 -1.0 927,405 - PFLU_RS04095 0.42 +0.2 927,405 - PFLU_RS04095 0.42 -0.9 927,405 - PFLU_RS04095 0.42 -0.3 927,648 + PFLU_RS04095 0.69 +0.1 927,648 + PFLU_RS04095 0.69 -1.0 927,649 - PFLU_RS04095 0.69 -0.0 927,649 - PFLU_RS04095 0.69 +0.1 927,649 - PFLU_RS04095 0.69 -0.6 927,759 + PFLU_RS04095 0.81 -1.8 927,888 - +0.7 927,888 - +0.2 927,921 + +0.2 927,921 + +0.1 927,921 + -0.2 927,921 + +0.9 927,921 + -2.0 927,921 + +0.5 927,921 + -0.5 927,921 + -1.2 927,921 + -0.3 927,921 + -0.3 927,921 + +1.1 927,921 + -1.0 927,921 + +0.2 927,921 + +0.2 927,921 + +1.8 927,922 - +0.0 927,922 - +0.3 927,922 - +0.4 927,922 - -1.2 927,922 - +0.8 927,922 - +0.4 927,922 - +0.9 927,922 - +0.3 927,922 - +0.3 927,922 - -0.7 927,922 - -1.1 927,922 - +0.4 927,922 - +0.0 927,922 - +0.2 927,981 + +1.2 927,982 - -0.3
Or see this region's nucleotide sequence