Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4440

Experiment: Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM
5,845,654	-		BT4438	0.50	-0.0
5,845,692	-		BT4438	0.53	-0.0
5,845,735	-		BT4438	0.56	+0.6
5,845,818	-		BT4438	0.62	-1.0
5,845,825	-		BT4438	0.63	-1.6
5,845,825	-		BT4438	0.63	-1.6
5,845,881	-		BT4438	0.67	-3.2
5,845,912	-		BT4438	0.69	-1.0
5,846,008	-		BT4438	0.76	-0.6
5,846,008	-		BT4438	0.76	+1.0
5,846,044	-		BT4438	0.79	-1.4
5,846,059	-		BT4438	0.80	+0.5
5,846,152	-		BT4438	0.87	-1.0
5,846,152	-		BT4438	0.87	-0.4
5,846,184	-		BT4438	0.89	-0.0
5,846,224	-				-2.8
5,846,227	-				-0.0
5,846,227	-				-0.0
5,846,546	-		BT4439	0.70	-0.0
5,846,606	-				-1.6
5,846,659	-				-0.4
5,846,659	-				-0.0
5,846,661	-				-0.8
5,846,808	+				-0.0
5,846,809	-				+0.7
5,846,844	-				-0.3
5,846,874	-				+0.5
5,846,877	+				-1.6
5,846,952	+				+0.1
5,847,079	-				+0.2
5,847,229	-				-1.2
5,847,230	+				+0.2
5,847,259	-				-0.0
5,847,330	+		BT4440	0.11	+1.0
5,847,347	+		BT4440	0.11	-1.6
5,847,484	-		BT4440	0.13	-0.0
5,847,517	+		BT4440	0.14	-4.0
5,847,517	+		BT4440	0.14	+1.0
5,847,517	+		BT4440	0.14	-0.3
5,847,518	-		BT4440	0.14	-1.4
5,847,541	-		BT4440	0.14	-1.0
5,847,541	-		BT4440	0.14	-0.4
5,847,565	-		BT4440	0.14	-0.9
5,847,585	+		BT4440	0.15	-1.8
5,847,586	-		BT4440	0.15	-1.4
5,847,603	+		BT4440	0.15	-2.0
5,847,662	-		BT4440	0.16	+0.4
5,847,701	+		BT4440	0.16	-0.8
5,847,702	-		BT4440	0.16	-0.3
5,847,719	+		BT4440	0.17	-0.9
5,847,720	-		BT4440	0.17	+2.0
5,847,735	+		BT4440	0.17	-0.0
5,847,783	+		BT4440	0.18	-0.5
5,847,783	+		BT4440	0.18	-1.5
5,847,784	-		BT4440	0.18	+0.4
5,847,784	-		BT4440	0.18	-1.2
5,847,795	+		BT4440	0.18	-1.6
5,847,812	+		BT4440	0.18	+1.0
5,847,839	-		BT4440	0.18	-1.0
5,847,875	-		BT4440	0.19	-1.4
5,847,963	-		BT4440	0.20	+0.3
5,847,990	+		BT4440	0.21	+0.2
5,847,991	-		BT4440	0.21	-0.4
5,848,002	+		BT4440	0.21	-0.0
5,848,017	+		BT4440	0.21	-2.4
5,848,025	+		BT4440	0.21	-1.2
5,848,119	+		BT4440	0.23	-1.6
5,848,127	-		BT4440	0.23	+0.5
5,848,127	-		BT4440	0.23	+0.5
5,848,127	-		BT4440	0.23	-0.5
5,848,127	-		BT4440	0.23	-0.0
5,848,146	+		BT4440	0.23	-0.0
5,848,168	-		BT4440	0.23	-0.5
5,848,221	+		BT4440	0.24	+0.4
5,848,225	-		BT4440	0.24	+0.4
5,848,358	-		BT4440	0.26	-0.2
5,848,423	-		BT4440	0.27	-0.9
5,848,469	+		BT4440	0.28	+0.2
5,848,469	+		BT4440	0.28	-1.6
5,848,517	+		BT4440	0.29	-1.0
5,848,518	-		BT4440	0.29	-0.0
5,848,524	+		BT4440	0.29	+1.1
5,848,525	-		BT4440	0.29	-1.3
5,848,616	+		BT4440	0.30	-0.0
5,848,616	+		BT4440	0.30	-0.5
5,848,617	-		BT4440	0.30	-1.5
5,848,803	+		BT4440	0.33	-1.8
5,848,804	-		BT4440	0.33	+3.3
5,848,830	+		BT4440	0.34	-1.7
5,848,839	+		BT4440	0.34	-1.8
5,848,856	-		BT4440	0.34	-0.8
5,848,857	+		BT4440	0.34	-2.4
5,848,870	-		BT4440	0.34	+1.0
5,848,885	-		BT4440	0.34	-0.8
5,848,952	+		BT4440	0.35	-1.0
5,848,958	+		BT4440	0.36	-2.4
5,848,958	+		BT4440	0.36	-1.0
5,848,959	-		BT4440	0.36	-1.4
5,848,961	-		BT4440	0.36	+2.0
5,848,961	-		BT4440	0.36	-0.0
5,848,975	+		BT4440	0.36	-0.0
5,849,109	+		BT4440	0.38	-2.6
5,849,124	+		BT4440	0.38	-0.0
5,849,157	+		BT4440	0.39	-0.0
5,849,158	-		BT4440	0.39	+2.8
5,849,158	-		BT4440	0.39	-0.0
5,849,179	-		BT4440	0.39	-0.0
5,849,179	-		BT4440	0.39	-2.0
5,849,204	-		BT4440	0.39	+2.0
5,849,226	-		BT4440	0.40	-0.0
5,849,229	+		BT4440	0.40	-2.2
5,849,230	-		BT4440	0.40	-1.4
5,849,259	+		BT4440	0.40	-2.0
5,849,260	-		BT4440	0.40	-0.8
5,849,268	+		BT4440	0.40	-0.0
5,849,344	-		BT4440	0.41	-1.0
5,849,471	-		BT4440	0.43	-2.4
5,849,531	+		BT4440	0.44	-3.2
5,849,532	-		BT4440	0.44	+0.5
5,849,538	-		BT4440	0.44	-0.0
5,849,539	+		BT4440	0.44	-4.2
5,849,595	-		BT4440	0.45	-1.0
5,849,596	+		BT4440	0.45	-1.6
5,849,612	+		BT4440	0.46	-2.4
5,849,615	-		BT4440	0.46	+1.8
5,849,791	+		BT4440	0.48	-3.9
5,849,792	-		BT4440	0.48	-1.9
5,849,794	-		BT4440	0.48	-1.6
5,849,794	-		BT4440	0.48	+1.0
5,849,794	-		BT4440	0.48	-1.0
5,849,831	+		BT4440	0.49	-0.6
5,849,832	-		BT4440	0.49	+1.3
5,849,860	+		BT4440	0.49	-1.6
5,849,861	-		BT4440	0.49	+0.4
5,849,937	+		BT4440	0.50	-1.6
5,849,940	-		BT4440	0.51	+1.0
5,849,940	-		BT4440	0.51	+0.8
5,850,005	-		BT4440	0.52	+1.5
5,850,008	-		BT4440	0.52	-0.9
5,850,011	-		BT4440	0.52	-0.6
5,850,033	+		BT4440	0.52	-1.6
5,850,071	+		BT4440	0.53	-0.0
5,850,278	-		BT4440	0.56	-0.9
5,850,278	-		BT4440	0.56	-3.2
5,850,286	-		BT4440	0.56	+0.7
5,850,286	-		BT4440	0.56	-2.8
5,850,286	-		BT4440	0.56	-0.0
5,850,380	-		BT4440	0.57	-0.6
5,850,488	+		BT4440	0.59	-2.4
5,850,489	-		BT4440	0.59	+0.5
5,850,489	-		BT4440	0.59	+0.5
5,850,493	-		BT4440	0.59	-0.3
5,850,534	-		BT4440	0.60	-0.0
5,850,637	-		BT4440	0.61	+1.5
5,850,663	-		BT4440	0.62	-0.4
5,850,669	+		BT4440	0.62	-1.6
5,850,670	-		BT4440	0.62	-0.2
5,850,683	-		BT4440	0.62	+2.4
5,850,753	+		BT4440	0.63	-2.0
5,850,753	+		BT4440	0.63	-3.5
5,850,754	-		BT4440	0.63	+0.4
5,850,880	+		BT4440	0.65	-0.0
5,850,911	+		BT4440	0.65	-1.0
5,850,992	+		BT4440	0.67	-1.0
5,850,993	-		BT4440	0.67	-1.4
5,851,006	+		BT4440	0.67	-0.0
5,851,007	-		BT4440	0.67	-0.0
5,851,019	+		BT4440	0.67	-1.0
5,851,020	-		BT4440	0.67	+1.5
5,851,020	-		BT4440	0.67	-0.0
5,851,020	-		BT4440	0.67	+0.4
5,851,020	-		BT4440	0.67	+0.5
5,851,054	-		BT4440	0.68	-1.2
5,851,076	+		BT4440	0.68	-0.0
5,851,169	+		BT4440	0.69	+1.0
5,851,170	-		BT4440	0.69	-0.3
5,851,170	-		BT4440	0.69	-0.6
5,851,183	-		BT4440	0.70	+0.2
5,851,198	-		BT4440	0.70	-1.1
5,851,314	+		BT4440	0.72	-3.2
5,851,314	+		BT4440	0.72	-4.2
5,851,449	+		BT4440	0.74	-3.8
5,851,452	-		BT4440	0.74	-1.3
5,851,526	-		BT4440	0.75	-0.5
5,851,573	-		BT4440	0.75	-0.8
5,851,620	-		BT4440	0.76	-0.0
5,851,629	-		BT4440	0.76	-0.6
5,851,629	-		BT4440	0.76	-1.0
5,851,710	-		BT4440	0.78	-0.8
5,851,750	-		BT4440	0.78	-1.0
5,851,750	-		BT4440	0.78	+0.5
5,851,819	-		BT4440	0.79	-0.0
5,851,885	-		BT4440	0.80	-2.4
5,851,990	-		BT4440	0.82	+1.0
5,852,115	+		BT4440	0.84	-1.6
5,852,123	+		BT4440	0.84	-1.0
5,852,124	-		BT4440	0.84	-0.5
5,852,128	-		BT4440	0.84	-1.1
5,852,209	-		BT4440	0.85	-2.1
5,852,337	-		BT4440	0.87	-0.9
5,852,392	-		BT4440	0.88	-1.0
5,852,417	+		BT4440	0.88	-4.3
5,852,417	+		BT4440	0.88	-1.6
5,852,421	+		BT4440	0.88	-0.0
5,852,431	-		BT4440	0.89	-0.0
5,852,443	-		BT4440	0.89	+0.1
5,852,465	-		BT4440	0.89	-0.0
5,852,488	-		BT4440	0.89	+1.0
5,852,538	-				-0.6
5,852,680	-				-1.4
5,852,710	+				-1.6
5,852,730	+				-0.3
5,852,731	-				-1.6
5,852,731	-				-1.2
5,852,843	+				+0.4
5,852,889	+				-0.0
5,852,930	+				+1.0
5,852,987	+				+2.3
5,852,990	+				+1.0
5,852,995	-				+0.7
5,853,204	-				+1.0
5,853,305	+		BT4441	0.15	+0.8
5,853,380	-		BT4441	0.25	+2.8
5,853,444	-		BT4441	0.34	-2.4
5,853,464	+		BT4441	0.37	-0.5
5,853,494	+				+1.3
5,853,495	-		BT4441	0.41	-2.4
5,853,521	-		BT4441	0.45	-1.6
5,853,521	-		BT4441	0.45	+0.5
5,853,521	-		BT4441	0.45	-1.2
5,853,745	-		BT4441	0.75	-2.0
5,853,808	-		BT4441	0.84	-0.8
5,853,864	-				-0.3
5,854,015	-				-3.0
5,854,050	-				-0.6
5,854,095	-				-0.4
5,854,170	-				+2.0