Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19520

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
2,162,945	+		BBR_RS19515	0.24	-0.7
2,162,952	+		BBR_RS19515	0.25	-0.7
2,162,952	+		BBR_RS19515	0.25	+1.1
2,162,975	+		BBR_RS19515	0.27	+0.9
2,162,990	+		BBR_RS19515	0.29	+1.2
2,162,990	+		BBR_RS19515	0.29	+1.3
2,162,990	+		BBR_RS19515	0.29	-0.5
2,162,990	+		BBR_RS19515	0.29	+2.6
2,162,993	-		BBR_RS19515	0.30	+1.8
2,162,998	-		BBR_RS19515	0.30	+2.2
2,163,063	+		BBR_RS19515	0.38	+3.7
2,163,064	+		BBR_RS19515	0.38	-0.7
2,163,069	-		BBR_RS19515	0.38	-1.7
2,163,069	-		BBR_RS19515	0.38	-2.1
2,163,076	+		BBR_RS19515	0.39	-1.3
2,163,124	+		BBR_RS19515	0.45	-0.9
2,163,153	+		BBR_RS19515	0.48	+0.3
2,163,153	+		BBR_RS19515	0.48	+3.5
2,163,153	+		BBR_RS19515	0.48	-0.4
2,163,181	-		BBR_RS19515	0.51	-1.0
2,163,182	+		BBR_RS19515	0.51	+3.4
2,163,219	+		BBR_RS19515	0.56	-1.3
2,163,223	-		BBR_RS19515	0.56	+2.4
2,163,240	+		BBR_RS19515	0.58	-0.4
2,163,241	+		BBR_RS19515	0.58	+1.8
2,163,250	+		BBR_RS19515	0.59	+3.2
2,163,264	+		BBR_RS19515	0.61	-1.4
2,163,271	+		BBR_RS19515	0.62	+0.5
2,163,271	+		BBR_RS19515	0.62	-0.6
2,163,271	+		BBR_RS19515	0.62	+1.0
2,163,277	-		BBR_RS19515	0.62	-2.0
2,163,279	-		BBR_RS19515	0.63	+0.5
2,163,296	+		BBR_RS19515	0.65	-1.0
2,163,299	-		BBR_RS19515	0.65	+1.6
2,163,305	-		BBR_RS19515	0.66	-2.5
2,163,305	-		BBR_RS19515	0.66	+2.7
2,163,312	+		BBR_RS19515	0.67	-1.0
2,163,312	+		BBR_RS19515	0.67	-1.1
2,163,312	+		BBR_RS19515	0.67	-1.8
2,163,312	-		BBR_RS19515	0.67	-0.6
2,163,319	+		BBR_RS19515	0.67	+1.9
2,163,319	+		BBR_RS19515	0.67	+2.6
2,163,319	+		BBR_RS19515	0.67	+2.1
2,163,319	+		BBR_RS19515	0.67	+3.9
2,163,319	+		BBR_RS19515	0.67	+0.0
2,163,319	+		BBR_RS19515	0.67	+1.6
2,163,320	-		BBR_RS19515	0.67	+0.0
2,163,320	-		BBR_RS19515	0.67	+0.0
2,163,327	-		BBR_RS19515	0.68	-0.7
2,163,327	-		BBR_RS19515	0.68	+3.3
2,163,327	-		BBR_RS19515	0.68	+2.9
2,163,327	-		BBR_RS19515	0.68	+3.2
2,163,327	-		BBR_RS19515	0.68	+1.8
2,163,329	+		BBR_RS19515	0.69	+0.5
2,163,350	+		BBR_RS19515	0.71	-0.6
2,163,350	+		BBR_RS19515	0.71	+1.3
2,163,350	+		BBR_RS19515	0.71	+0.4
2,163,350	+		BBR_RS19515	0.71	-1.2
2,163,353	-		BBR_RS19515	0.71	+3.5
2,163,353	-		BBR_RS19515	0.71	-0.9
2,163,358	-		BBR_RS19515	0.72	-1.3
2,163,358	-		BBR_RS19515	0.72	-0.8
2,163,358	-		BBR_RS19515	0.72	+0.2
2,163,358	-		BBR_RS19515	0.72	+0.6
2,163,358	-		BBR_RS19515	0.72	-0.2
2,163,375	+		BBR_RS19515	0.74	-0.7
2,163,384	+		BBR_RS19515	0.75	-0.1
2,163,389	+		BBR_RS19515	0.75	-1.0
2,163,390	+		BBR_RS19515	0.76	+1.9
2,163,415	-		BBR_RS19515	0.79	+0.4
2,163,428	+		BBR_RS19515	0.80	+0.3
2,163,431	-		BBR_RS19515	0.80	+2.9
2,163,443	+		BBR_RS19515	0.82	-0.8
2,163,446	-		BBR_RS19515	0.82	-0.8
2,163,446	-		BBR_RS19515	0.82	+2.6
2,163,451	-		BBR_RS19515	0.83	-1.4
2,163,452	-		BBR_RS19515	0.83	+0.1
2,163,473	-		BBR_RS19515	0.85	+2.5
2,163,477	-		BBR_RS19515	0.86	-1.5
2,163,478	+		BBR_RS19515	0.86	+2.8
2,163,486	-		BBR_RS19515	0.87	-1.5
2,163,486	-		BBR_RS19515	0.87	+2.5
2,163,486	-		BBR_RS19515	0.87	-1.1
2,163,491	-		BBR_RS19515	0.87	+1.5
2,163,491	-		BBR_RS19515	0.87	+2.5
2,163,491	-		BBR_RS19515	0.87	-0.6
2,163,491	-		BBR_RS19515	0.87	+2.7
2,163,495	+		BBR_RS19515	0.88	+0.5
2,163,510	-		BBR_RS19515	0.90	+0.7
2,163,520	-				+0.6
2,163,520	-				-0.0
2,163,522	-				-2.6
2,163,525	-				+1.7
2,163,527	+				-0.9
2,163,561	+				-1.3
2,163,569	-				+1.4
2,163,570	-				+1.4
2,163,570	-				-1.3
2,163,602	-				+0.4
2,163,662	-				-1.7
2,163,672	-				-0.5
2,163,672	-				+1.0
2,163,682	-				-0.1
2,163,682	-				+2.9
2,163,682	-				+1.2
2,163,682	-				+3.0
2,163,682	-				-0.8
2,163,682	-				+2.4
2,163,682	-				+1.4
2,163,682	-				+2.8
2,163,682	-				-1.0
2,163,689	+				-0.8
2,163,697	-				+1.8
2,163,697	-				+1.6
2,163,697	-				+3.3
2,163,697	-				-3.1
2,163,711	+				+1.2
2,163,736	+				+4.6
2,163,752	-				+1.8
2,163,760	+				+0.6
2,163,815	+				-2.1
2,163,838	-				+2.0
2,163,848	-				-2.9
2,163,854	+				+0.9
2,163,862	+				-0.6
2,163,862	+				-1.0
2,163,867	-				-0.4
2,163,870	-				+0.1
2,163,870	-				+0.5
2,163,936	-				+0.8
2,164,029	-		BBR_RS19520	0.36	-1.6
2,164,076	-		BBR_RS19520	0.54	+0.8
2,164,076	-		BBR_RS19520	0.54	-1.5
2,164,087	+		BBR_RS19520	0.58	+1.5
2,164,087	+		BBR_RS19520	0.58	+2.1
2,164,098	-		BBR_RS19520	0.62	-2.5
2,164,112	-		BBR_RS19520	0.67	-0.8
2,164,162	-		BBR_RS19520	0.86	-1.8
2,164,166	-		BBR_RS19520	0.87	+0.1
2,164,211	-				-0.8
2,164,214	+				+1.0
2,164,214	+				+0.4
2,164,222	-				+3.1
2,164,222	-				-0.2
2,164,222	-				+3.4
2,164,272	+		BBR_RS19525	0.16	-0.8
2,164,285	-		BBR_RS19525	0.18	+1.9
2,164,286	+		BBR_RS19525	0.19	+2.7
2,164,291	+		BBR_RS19525	0.20	-1.7
2,164,291	+		BBR_RS19525	0.20	-0.2
2,164,318	+		BBR_RS19525	0.25	-2.1
2,164,318	+		BBR_RS19525	0.25	-1.4
2,164,321	+		BBR_RS19525	0.25	+0.9
2,164,321	+		BBR_RS19525	0.25	-0.8
2,164,323	+		BBR_RS19525	0.26	-1.2
2,164,323	+		BBR_RS19525	0.26	+1.6
2,164,328	+		BBR_RS19525	0.27	+1.7
2,164,329	-		BBR_RS19525	0.27	+5.5
2,164,331	-		BBR_RS19525	0.27	-1.1
2,164,333	+		BBR_RS19525	0.28	+0.1
2,164,337	-		BBR_RS19525	0.29	-0.9
2,164,342	+		BBR_RS19525	0.30	-1.0
2,164,355	+		BBR_RS19525	0.32	+2.8
2,164,377	+		BBR_RS19525	0.36	+0.2
2,164,387	+		BBR_RS19525	0.38	+2.5
2,164,402	+		BBR_RS19525	0.41	-0.9
2,164,402	+		BBR_RS19525	0.41	-2.6
2,164,402	+		BBR_RS19525	0.41	-0.7
2,164,402	+		BBR_RS19525	0.41	-0.7
2,164,402	+		BBR_RS19525	0.41	-1.0
2,164,410	-		BBR_RS19525	0.43	+1.8
2,164,410	-		BBR_RS19525	0.43	+0.8
2,164,410	-		BBR_RS19525	0.43	-1.8
2,164,410	-		BBR_RS19525	0.43	-0.0
2,164,410	-		BBR_RS19525	0.43	-0.9
2,164,410	-		BBR_RS19525	0.43	-2.2
2,164,410	-		BBR_RS19525	0.43	+0.6
2,164,410	-		BBR_RS19525	0.43	+3.7
2,164,410	-		BBR_RS19525	0.43	+2.8
2,164,410	-		BBR_RS19525	0.43	-0.5
2,164,410	-		BBR_RS19525	0.43	-0.5
2,164,412	+		BBR_RS19525	0.43	+2.6
2,164,412	+		BBR_RS19525	0.43	-2.8
2,164,429	+		BBR_RS19525	0.47	-0.2
2,164,437	-		BBR_RS19525	0.48	+3.7
2,164,451	-		BBR_RS19525	0.51	+0.4
2,164,452	-		BBR_RS19525	0.51	+1.4
2,164,481	-		BBR_RS19525	0.57	+0.9
2,164,516	+		BBR_RS19525	0.64	+0.2
2,164,524	+		BBR_RS19525	0.65	+0.0
2,164,524	+		BBR_RS19525	0.65	-0.9
2,164,526	+		BBR_RS19525	0.66	-0.7
2,164,534	+		BBR_RS19525	0.67	-1.3
2,164,567	+		BBR_RS19525	0.74	-1.0
2,164,567	+		BBR_RS19525	0.74	+1.4
2,164,596	-		BBR_RS19525	0.79	+0.1
2,164,596	-		BBR_RS19525	0.79	-0.6
2,164,629	+		BBR_RS19525	0.86	-0.2
2,164,637	-		BBR_RS19525	0.87	+2.1
2,164,656	-				+1.1
2,164,667	+				+1.9
2,164,667	+				+1.4
2,164,675	-				+0.4
2,164,675	-				+1.8
2,164,699	-				-1.7
2,164,715	+				+2.6
2,164,715	+				+0.9
2,164,720	+				-1.0
2,164,723	-				-0.5
2,164,723	-				-0.5
2,164,723	-				-0.8
2,164,746	+				+0.4
2,164,749	-				+0.8
2,164,759	+				+1.0
2,164,766	+				+1.8
2,164,767	-				-0.1
2,164,787	+				-1.6
2,164,787	+				+0.2
2,164,794	-				+2.4
2,164,794	-				-2.6
2,164,795	-				-1.2
2,164,795	-				-0.2
2,164,808	+				-0.5
2,164,818	+				+2.1
2,164,837	-				+0.3
2,164,837	-				+2.3
2,164,865	-				+2.6
2,164,884	-				-0.4
2,164,899	+				-0.7
2,164,899	+				+0.1
2,164,899	+				+3.2
2,164,899	+				+0.6
2,164,901	-				+1.5
2,164,907	-				+0.3
2,164,914	-		BBR_RS19530	0.10	-0.1
2,164,914	-		BBR_RS19530	0.10	+2.5
2,164,921	-		BBR_RS19530	0.11	+0.2
2,164,921	-		BBR_RS19530	0.11	-1.0
2,164,934	+		BBR_RS19530	0.12	+4.2
2,164,934	+		BBR_RS19530	0.12	+0.6
2,164,946	+		BBR_RS19530	0.13	+0.3
2,164,946	+		BBR_RS19530	0.13	+1.2
2,164,947	+		BBR_RS19530	0.13	+1.9
2,164,947	+		BBR_RS19530	0.13	-0.7
2,164,949	-		BBR_RS19530	0.13	-1.1
2,164,950	-		BBR_RS19530	0.13	+1.0
2,164,954	-		BBR_RS19530	0.13	-2.1
2,164,954	-		BBR_RS19530	0.13	-0.8
2,164,954	-		BBR_RS19530	0.13	+0.9
2,164,955	-		BBR_RS19530	0.13	+0.7
2,164,955	-		BBR_RS19530	0.13	+0.2
2,164,955	-		BBR_RS19530	0.13	-0.5
2,164,960	+		BBR_RS19530	0.14	-0.4
2,164,961	+		BBR_RS19530	0.14	+0.7
2,164,968	-		BBR_RS19530	0.14	-1.5
2,164,998	-		BBR_RS19530	0.16	+1.2
2,165,010	+		BBR_RS19530	0.17	+1.8
2,165,020	+		BBR_RS19530	0.18	-0.7
2,165,020	+		BBR_RS19530	0.18	-1.2
2,165,042	+		BBR_RS19530	0.19	+3.8
2,165,045	+		BBR_RS19530	0.19	+1.3
2,165,045	+		BBR_RS19530	0.19	+0.1
2,165,047	+		BBR_RS19530	0.20	+0.0
2,165,051	-		BBR_RS19530	0.20	+0.4
2,165,053	-		BBR_RS19530	0.20	+2.6
2,165,057	+		BBR_RS19530	0.20	+1.1
2,165,085	-		BBR_RS19530	0.22	-0.4
2,165,094	+		BBR_RS19530	0.23	+4.9
2,165,099	+		BBR_RS19530	0.23	-0.4
2,165,116	-		BBR_RS19530	0.24	-0.1
2,165,118	+		BBR_RS19530	0.24	+1.8
2,165,118	+		BBR_RS19530	0.24	-0.7
2,165,123	+		BBR_RS19530	0.25	+0.6
2,165,126	+		BBR_RS19530	0.25	+2.2
2,165,134	+		BBR_RS19530	0.26	+0.4
2,165,142	-		BBR_RS19530	0.26	+0.7
2,165,142	-		BBR_RS19530	0.26	-0.2
2,165,176	+		BBR_RS19530	0.28	+2.3
2,165,195	+		BBR_RS19530	0.30	-0.8