Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19055

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
2,051,823	+		BBR_RS19050	0.24	-0.9
2,051,831	-		BBR_RS19050	0.25	+0.9
2,051,836	-		BBR_RS19050	0.25	+3.3
2,051,852	-		BBR_RS19050	0.26	-1.6
2,051,873	-		BBR_RS19050	0.28	+1.7
2,051,878	-		BBR_RS19050	0.29	-2.0
2,051,887	-		BBR_RS19050	0.29	-2.5
2,051,938	+		BBR_RS19050	0.34	+4.2
2,051,950	+		BBR_RS19050	0.35	-1.9
2,051,950	+		BBR_RS19050	0.35	-0.0
2,051,958	-		BBR_RS19050	0.35	-0.8
2,051,958	-		BBR_RS19050	0.35	+3.8
2,051,958	-		BBR_RS19050	0.35	-1.8
2,051,960	-		BBR_RS19050	0.36	-1.0
2,051,960	-		BBR_RS19050	0.36	+2.1
2,052,004	+		BBR_RS19050	0.39	-1.0
2,052,004	+		BBR_RS19050	0.39	-1.1
2,052,015	-		BBR_RS19050	0.40	+1.5
2,052,019	-		BBR_RS19050	0.40	+1.2
2,052,023	+		BBR_RS19050	0.41	+1.0
2,052,032	+		BBR_RS19050	0.42	-0.5
2,052,044	+		BBR_RS19050	0.43	+1.4
2,052,044	+		BBR_RS19050	0.43	+0.5
2,052,079	-		BBR_RS19050	0.46	+0.1
2,052,089	+		BBR_RS19050	0.46	-3.4
2,052,096	-		BBR_RS19050	0.47	-2.3
2,052,098	-		BBR_RS19050	0.47	+1.8
2,052,105	-		BBR_RS19050	0.48	-0.3
2,052,128	-		BBR_RS19050	0.50	+2.6
2,052,140	+		BBR_RS19050	0.51	+2.4
2,052,147	+		BBR_RS19050	0.51	+0.4
2,052,147	+		BBR_RS19050	0.51	-1.8
2,052,152	+		BBR_RS19050	0.52	+2.1
2,052,152	+		BBR_RS19050	0.52	-1.4
2,052,155	-		BBR_RS19050	0.52	-1.9
2,052,155	-		BBR_RS19050	0.52	-1.0
2,052,155	-		BBR_RS19050	0.52	+1.6
2,052,173	-		BBR_RS19050	0.53	-0.9
2,052,183	+		BBR_RS19050	0.54	+4.1
2,052,249	-		BBR_RS19050	0.60	-1.4
2,052,250	+		BBR_RS19050	0.60	+1.9
2,052,258	-		BBR_RS19050	0.61	+4.4
2,052,296	-		BBR_RS19050	0.64	-1.8
2,052,296	-		BBR_RS19050	0.64	-1.5
2,052,301	+		BBR_RS19050	0.64	-1.0
2,052,309	-		BBR_RS19050	0.65	-0.8
2,052,314	-		BBR_RS19050	0.65	+3.5
2,052,364	+		BBR_RS19050	0.70	-1.4
2,052,364	+		BBR_RS19050	0.70	+1.7
2,052,394	-		BBR_RS19050	0.72	+2.9
2,052,394	-		BBR_RS19050	0.72	-1.7
2,052,394	-		BBR_RS19050	0.72	-0.2
2,052,425	+		BBR_RS19050	0.75	+0.9
2,052,463	+		BBR_RS19050	0.78	-1.3
2,052,464	-		BBR_RS19050	0.78	-1.3
2,052,469	-		BBR_RS19050	0.78	-1.0
2,052,470	+		BBR_RS19050	0.78	+0.7
2,052,478	-		BBR_RS19050	0.79	-2.4
2,052,492	-		BBR_RS19050	0.80	+3.3
2,052,505	+		BBR_RS19050	0.81	-1.6
2,052,531	-		BBR_RS19050	0.84	+0.3
2,052,540	-		BBR_RS19050	0.84	-2.3
2,052,576	+		BBR_RS19050	0.87	-1.3
2,052,576	+		BBR_RS19050	0.87	-2.0
2,052,584	-		BBR_RS19050	0.88	+0.2
2,052,645	+				+0.5
2,052,650	+				+0.3
2,052,660	+				-0.7
2,052,663	-				-0.4
2,052,663	-				-1.0
2,052,663	-				-0.6
2,052,663	-				+0.6
2,052,669	+				+2.0
2,052,677	-				-0.7
2,052,686	-				+1.8
2,052,686	-				+4.0
2,052,731	-				+2.8
2,052,809	-				-0.5
2,052,850	+		BBR_RS19055	0.10	+0.2
2,052,904	-		BBR_RS19055	0.27	+0.6
2,052,904	-		BBR_RS19055	0.27	-0.6
2,053,145	+				-0.9
2,053,180	+				+3.5
2,053,188	-				-0.5
2,053,188	-				-2.9
2,053,194	+				+2.3
2,053,194	+				-0.5
2,053,194	+				-1.1
2,053,199	+				-0.3
2,053,201	+				+0.3
2,053,202	-				-1.0
2,053,202	-				-0.8
2,053,206	+				+1.0
2,053,209	-				+0.6
2,053,214	-				-0.9
2,053,214	-				-1.3
2,053,214	-				+2.1
2,053,223	-				+1.1
2,053,223	-				-1.6
2,053,228	-				+1.2
2,053,248	+				+2.1
2,053,255	+				-2.3
2,053,255	+				+0.4
2,053,255	+				+1.8
2,053,283	-				-2.4
2,053,296	-				-1.2
2,053,323	-				-0.7
2,053,338	+				+0.2
2,053,346	-				-0.4
2,053,361	-		BBR_RS19060	0.10	-0.3
2,053,364	+		BBR_RS19060	0.11	+4.0
2,053,364	+		BBR_RS19060	0.11	-0.0
2,053,371	-		BBR_RS19060	0.11	-1.7
2,053,374	+		BBR_RS19060	0.11	+1.6
2,053,394	+		BBR_RS19060	0.13	-1.4
2,053,415	-		BBR_RS19060	0.14	-0.6
2,053,423	+		BBR_RS19060	0.14	-1.9
2,053,423	-		BBR_RS19060	0.14	-1.3
2,053,423	-		BBR_RS19060	0.14	-1.3
2,053,428	+		BBR_RS19060	0.15	-0.4
2,053,493	+		BBR_RS19060	0.19	-1.8
2,053,493	+		BBR_RS19060	0.19	+1.2
2,053,501	+		BBR_RS19060	0.20	+1.5
2,053,501	-		BBR_RS19060	0.20	-1.6
2,053,501	-		BBR_RS19060	0.20	-1.9
2,053,501	-		BBR_RS19060	0.20	-1.5
2,053,506	-		BBR_RS19060	0.20	+0.8
2,053,509	-		BBR_RS19060	0.20	+0.3
2,053,538	+		BBR_RS19060	0.22	-1.3
2,053,541	-		BBR_RS19060	0.22	-3.3
2,053,545	+		BBR_RS19060	0.22	+0.3
2,053,546	-		BBR_RS19060	0.22	+0.9
2,053,550	+		BBR_RS19060	0.23	-1.3
2,053,551	+		BBR_RS19060	0.23	-1.1
2,053,552	-		BBR_RS19060	0.23	-0.1
2,053,556	+		BBR_RS19060	0.23	+0.8
2,053,559	-		BBR_RS19060	0.23	-0.8
2,053,559	-		BBR_RS19060	0.23	+0.1
2,053,559	-		BBR_RS19060	0.23	-1.3
2,053,564	-		BBR_RS19060	0.24	-0.6
2,053,575	+		BBR_RS19060	0.24	-1.3
2,053,583	-		BBR_RS19060	0.25	-0.8
2,053,588	-		BBR_RS19060	0.25	-1.2
2,053,590	+		BBR_RS19060	0.25	-0.7
2,053,606	+		BBR_RS19060	0.26	-0.1
2,053,614	-		BBR_RS19060	0.27	+2.0
2,053,614	-		BBR_RS19060	0.27	-1.0
2,053,614	-		BBR_RS19060	0.27	-1.6
2,053,619	-		BBR_RS19060	0.27	+0.6
2,053,624	-		BBR_RS19060	0.28	-0.6
2,053,631	-		BBR_RS19060	0.28	-2.6
2,053,633	-		BBR_RS19060	0.28	-1.0
2,053,634	-		BBR_RS19060	0.28	-0.8
2,053,641	+		BBR_RS19060	0.29	+0.2
2,053,649	-		BBR_RS19060	0.29	+2.3
2,053,649	-		BBR_RS19060	0.29	-0.4
2,053,674	-		BBR_RS19060	0.31	-1.4
2,053,690	-		BBR_RS19060	0.32	+2.8
2,053,695	+		BBR_RS19060	0.32	-0.9
2,053,704	-		BBR_RS19060	0.33	+3.7
2,053,707	-		BBR_RS19060	0.33	-1.4
2,053,709	-		BBR_RS19060	0.33	-2.0
2,053,711	+		BBR_RS19060	0.33	-0.0
2,053,714	-		BBR_RS19060	0.33	+3.8
2,053,739	+		BBR_RS19060	0.35	+1.8
2,053,739	+		BBR_RS19060	0.35	-1.6
2,053,767	+		BBR_RS19060	0.37	+3.0
2,053,782	+		BBR_RS19060	0.38	-0.2
2,053,785	-		BBR_RS19060	0.38	-1.2
2,053,799	+		BBR_RS19060	0.39	-0.8
2,053,799	+		BBR_RS19060	0.39	-1.0
2,053,799	+		BBR_RS19060	0.39	-1.3
2,053,807	-		BBR_RS19060	0.40	-3.3
2,053,807	-		BBR_RS19060	0.40	-2.0
2,053,807	-		BBR_RS19060	0.40	-1.0
2,053,807	-		BBR_RS19060	0.40	-1.2
2,053,807	-		BBR_RS19060	0.40	+0.5
2,053,807	-		BBR_RS19060	0.40	-1.7
2,053,807	-		BBR_RS19060	0.40	+1.2
2,053,829	-		BBR_RS19060	0.41	-1.1
2,053,830	+		BBR_RS19060	0.41	+1.2
2,053,845	-		BBR_RS19060	0.42	+4.4
2,053,858	-		BBR_RS19060	0.43	-1.7
2,053,873	-		BBR_RS19060	0.44	-1.8
2,053,881	-		BBR_RS19060	0.44	-0.6
2,053,911	-		BBR_RS19060	0.46	+1.3
2,053,911	-		BBR_RS19060	0.46	-1.2
2,053,942	-		BBR_RS19060	0.48	-1.2
2,053,959	+		BBR_RS19060	0.50	+1.1
2,053,959	+		BBR_RS19060	0.50	-0.9
2,053,967	-		BBR_RS19060	0.50	-2.6
2,053,967	-		BBR_RS19060	0.50	-0.0
2,053,969	+		BBR_RS19060	0.50	+1.1
2,053,969	+		BBR_RS19060	0.50	-0.0
2,053,974	+		BBR_RS19060	0.50	-1.0
2,053,977	-		BBR_RS19060	0.51	-0.7
2,053,977	-		BBR_RS19060	0.51	-1.2
2,053,978	-		BBR_RS19060	0.51	+3.3
2,054,007	+		BBR_RS19060	0.53	+0.2
2,054,014	+		BBR_RS19060	0.53	+2.0
2,054,014	+		BBR_RS19060	0.53	-0.4
2,054,015	-		BBR_RS19060	0.53	+0.1
2,054,015	-		BBR_RS19060	0.53	-0.4
2,054,040	+		BBR_RS19060	0.55	+2.2
2,054,063	-		BBR_RS19060	0.56	-2.0
2,054,066	+		BBR_RS19060	0.57	+0.3
2,054,070	+		BBR_RS19060	0.57	-0.0
2,054,074	-		BBR_RS19060	0.57	-0.2
2,054,106	-		BBR_RS19060	0.59	-0.6
2,054,106	-		BBR_RS19060	0.59	-1.0
2,054,111	-		BBR_RS19060	0.59	-0.5
2,054,136	-		BBR_RS19060	0.61	-1.8