Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18565

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
1,949,549	+				-0.1
1,949,549	+				-0.8
1,949,586	+				+3.5
1,949,586	+				+4.1
1,949,594	-				-2.3
1,949,594	-				+1.2
1,949,645	+				+4.0
1,949,653	-				-0.8
1,949,696	+				+1.0
1,949,696	+				-1.3
1,949,705	-				+2.7
1,949,728	-				-1.0
1,949,772	+				+2.6
1,949,780	-		BBR_RS18560	0.10	-2.3
1,949,780	-		BBR_RS18560	0.10	+0.4
1,949,780	-		BBR_RS18560	0.10	+1.6
1,949,886	-		BBR_RS18560	0.24	-0.3
1,949,886	-		BBR_RS18560	0.24	-1.1
1,949,901	-		BBR_RS18560	0.26	+0.8
1,949,911	-		BBR_RS18560	0.28	-1.1
1,949,911	-		BBR_RS18560	0.28	-1.9
1,949,923	+		BBR_RS18560	0.29	+0.6
1,949,941	-		BBR_RS18560	0.32	-1.2
1,949,951	+		BBR_RS18560	0.33	-0.6
1,949,982	+		BBR_RS18560	0.37	-0.1
1,949,982	+		BBR_RS18560	0.37	+2.4
1,949,982	+		BBR_RS18560	0.37	+0.5
1,949,982	-		BBR_RS18560	0.37	-0.6
1,949,984	+		BBR_RS18560	0.38	-0.1
1,949,985	-		BBR_RS18560	0.38	+0.7
1,949,985	-		BBR_RS18560	0.38	-1.5
1,949,989	+		BBR_RS18560	0.38	+0.4
1,949,990	-		BBR_RS18560	0.38	-1.6
1,949,990	-		BBR_RS18560	0.38	-0.9
1,949,990	-		BBR_RS18560	0.38	+0.7
1,949,990	-		BBR_RS18560	0.38	-2.8
1,949,999	+		BBR_RS18560	0.40	-0.4
1,950,005	-		BBR_RS18560	0.41	+2.0
1,950,007	-		BBR_RS18560	0.41	+1.4
1,950,059	+		BBR_RS18560	0.48	+0.8
1,950,076	+		BBR_RS18560	0.50	+0.9
1,950,077	-		BBR_RS18560	0.50	-0.9
1,950,099	-		BBR_RS18560	0.53	+1.7
1,950,109	-		BBR_RS18560	0.55	-2.8
1,950,121	+		BBR_RS18560	0.56	-1.3
1,950,126	+		BBR_RS18560	0.57	-0.4
1,950,143	-		BBR_RS18560	0.59	-0.2
1,950,147	+		BBR_RS18560	0.60	+0.3
1,950,163	-		BBR_RS18560	0.62	-1.2
1,950,175	-		BBR_RS18560	0.64	-1.4
1,950,205	+		BBR_RS18560	0.68	+0.2
1,950,205	+		BBR_RS18560	0.68	+1.3
1,950,227	+		BBR_RS18560	0.71	+5.3
1,950,235	-		BBR_RS18560	0.72	+3.9
1,950,242	+		BBR_RS18560	0.73	-0.0
1,950,263	+		BBR_RS18560	0.75	-1.3
1,950,296	+		BBR_RS18560	0.80	+0.5
1,950,304	-		BBR_RS18560	0.81	-0.3
1,950,304	-		BBR_RS18560	0.81	-1.0
1,950,304	-		BBR_RS18560	0.81	-0.7
1,950,304	-		BBR_RS18560	0.81	-1.5
1,950,329	+		BBR_RS18560	0.84	-1.2
1,950,332	+		BBR_RS18560	0.85	-0.1
1,950,332	+		BBR_RS18560	0.85	+0.3
1,950,340	-		BBR_RS18560	0.86	-0.3
1,950,341	+		BBR_RS18560	0.86	-0.3
1,950,347	-		BBR_RS18560	0.87	-0.8
1,950,348	-		BBR_RS18560	0.87	+3.5
1,950,348	-		BBR_RS18560	0.87	-1.7
1,950,351	-		BBR_RS18560	0.87	-0.8
1,950,453	+				-0.3
1,950,461	-				-1.0
1,950,461	-				-0.5
1,950,461	-				-0.4
1,950,462	-				-0.3
1,950,509	-				-1.2
1,950,871	-		BBR_RS18565	0.34	+1.2
1,950,881	-		BBR_RS18565	0.35	+0.5
1,951,137	+		BBR_RS18565	0.62	+1.0
1,951,475	-				-0.5
1,951,589	-				-0.8
1,951,591	+				-0.4
1,951,619	-				+0.5
1,951,725	-				-0.5
1,951,727	+				+3.2
1,951,737	+				-0.6
1,951,742	+				-1.1
1,951,748	-				+2.3
1,951,748	-				-1.8
1,951,781	+				-1.1
1,951,781	+				-0.8
1,951,782	+				-2.4
1,951,807	+				+1.7
1,951,807	+				+0.1
1,951,815	-				+0.7
1,951,841	-				+2.8
1,951,856	-				-1.2
1,951,871	+				+1.7
1,951,871	+				+2.0
1,951,871	+				-0.9
1,951,871	+				-1.1
1,951,876	+		BBR_RS18570	0.10	-1.0
1,951,879	-		BBR_RS18570	0.11	+2.9
1,951,879	-		BBR_RS18570	0.11	-0.2
1,951,879	-		BBR_RS18570	0.11	-1.4
1,951,879	-		BBR_RS18570	0.11	-0.5
1,951,913	-		BBR_RS18570	0.14	-0.7
1,951,971	+		BBR_RS18570	0.19	+1.0
1,951,976	+		BBR_RS18570	0.19	-0.4
1,951,983	+		BBR_RS18570	0.20	+1.1
1,952,027	-		BBR_RS18570	0.24	-0.7
1,952,054	+		BBR_RS18570	0.26	-0.9
1,952,073	-		BBR_RS18570	0.28	+0.2
1,952,090	-		BBR_RS18570	0.29	+1.3
1,952,094	+		BBR_RS18570	0.30	-0.4
1,952,101	+		BBR_RS18570	0.30	+1.0
1,952,101	+		BBR_RS18570	0.30	+2.8
1,952,123	-		BBR_RS18570	0.32	+3.1
1,952,132	+		BBR_RS18570	0.33	-0.7
1,952,132	+		BBR_RS18570	0.33	+0.2
1,952,159	+		BBR_RS18570	0.35	+1.5
1,952,159	+		BBR_RS18570	0.35	-1.1
1,952,159	+		BBR_RS18570	0.35	+0.6
1,952,159	+		BBR_RS18570	0.35	+0.8
1,952,167	+		BBR_RS18570	0.36	+1.2
1,952,174	+		BBR_RS18570	0.37	+1.6
1,952,177	-		BBR_RS18570	0.37	+0.6
1,952,198	+		BBR_RS18570	0.39	-1.1
1,952,198	+		BBR_RS18570	0.39	-0.4
1,952,200	-		BBR_RS18570	0.39	-0.7
1,952,203	+		BBR_RS18570	0.39	+4.7
1,952,242	+		BBR_RS18570	0.43	+0.6
1,952,242	+		BBR_RS18570	0.43	+0.7
1,952,273	-		BBR_RS18570	0.45	+2.6
1,952,301	+		BBR_RS18570	0.48	-1.4
1,952,305	+		BBR_RS18570	0.48	-0.3
1,952,305	+		BBR_RS18570	0.48	-1.6
1,952,322	+		BBR_RS18570	0.50	-2.3
1,952,330	-		BBR_RS18570	0.50	+0.5
1,952,339	+		BBR_RS18570	0.51	-2.7
1,952,339	+		BBR_RS18570	0.51	-1.3
1,952,367	+		BBR_RS18570	0.54	-0.5
1,952,369	+		BBR_RS18570	0.54	-0.6
1,952,371	+		BBR_RS18570	0.54	+1.4
1,952,377	-		BBR_RS18570	0.54	-0.1
1,952,377	-		BBR_RS18570	0.54	-0.6
1,952,377	-		BBR_RS18570	0.54	+1.6
1,952,379	-		BBR_RS18570	0.55	-0.1
1,952,394	+		BBR_RS18570	0.56	+0.5
1,952,394	+		BBR_RS18570	0.56	-1.2
1,952,394	+		BBR_RS18570	0.56	+0.4
1,952,394	-		BBR_RS18570	0.56	+0.7
1,952,402	-		BBR_RS18570	0.57	-1.6
1,952,412	+		BBR_RS18570	0.58	+0.5
1,952,412	+		BBR_RS18570	0.58	+2.6
1,952,413	+		BBR_RS18570	0.58	-0.3
1,952,413	+		BBR_RS18570	0.58	-0.3
1,952,415	+		BBR_RS18570	0.58	+1.2
1,952,420	+		BBR_RS18570	0.58	+2.9
1,952,420	+		BBR_RS18570	0.58	+0.1
1,952,432	+		BBR_RS18570	0.59	-0.9
1,952,432	+		BBR_RS18570	0.59	+0.0
1,952,432	+		BBR_RS18570	0.59	-1.3
1,952,432	+		BBR_RS18570	0.59	-0.8
1,952,432	+		BBR_RS18570	0.59	+4.1
1,952,432	+		BBR_RS18570	0.59	+0.4
1,952,440	-		BBR_RS18570	0.60	+0.6
1,952,440	-		BBR_RS18570	0.60	+3.1
1,952,462	+		BBR_RS18570	0.62	-0.8
1,952,468	+		BBR_RS18570	0.62	-1.3
1,952,469	+		BBR_RS18570	0.63	-0.3
1,952,477	-		BBR_RS18570	0.63	-0.3
1,952,492	-		BBR_RS18570	0.65	-0.2
1,952,501	+		BBR_RS18570	0.65	+0.4