Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17990

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
1,822,571	+		BBR_RS17985	0.80	+2.3
1,822,575	+		BBR_RS17985	0.80	-2.0
1,822,575	+		BBR_RS17985	0.80	+0.7
1,822,630	+		BBR_RS17985	0.81	-1.0
1,822,630	+		BBR_RS17985	0.81	-0.7
1,822,630	+		BBR_RS17985	0.81	-0.8
1,822,630	+		BBR_RS17985	0.81	-2.0
1,822,630	+		BBR_RS17985	0.81	-1.2
1,822,630	+		BBR_RS17985	0.81	+4.1
1,822,647	+		BBR_RS17985	0.82	+0.2
1,822,647	+		BBR_RS17985	0.82	+1.6
1,822,655	-		BBR_RS17985	0.82	-1.4
1,822,666	-		BBR_RS17985	0.82	+2.6
1,822,707	-		BBR_RS17985	0.83	-0.3
1,822,743	-		BBR_RS17985	0.84	+3.2
1,822,803	+		BBR_RS17985	0.85	-0.9
1,822,803	+		BBR_RS17985	0.85	-2.3
1,822,811	-		BBR_RS17985	0.86	+2.1
1,822,833	-		BBR_RS17985	0.86	-1.0
1,822,874	+		BBR_RS17985	0.87	+1.2
1,822,882	-		BBR_RS17985	0.87	+2.3
1,822,983	+		BBR_RS17985	0.90	+0.5
1,822,989	+				-1.0
1,822,989	+				+1.8
1,822,989	+				-0.9
1,822,997	-				-1.2
1,822,997	-				-1.9
1,823,006	+				-1.1
1,823,021	-				-0.7
1,823,021	-				-0.8
1,823,026	-				-0.6
1,823,028	+				-0.8
1,823,051	+				-0.1
1,823,097	+				+0.1
1,823,111	+				+0.9
1,823,115	+				+0.8
1,823,132	-				+3.2
1,823,137	-				-2.0
1,823,146	-				-0.3
1,823,158	-				-2.0
1,823,158	-				-0.5
1,823,158	-				-0.8
1,823,158	-				+1.3
1,823,160	+				-2.1
1,823,160	+				-2.2
1,823,160	+				-1.3
1,823,165	+				+0.2
1,823,178	-				-0.6
1,823,240	-				-0.2
1,823,293	-				+1.0
1,823,293	-				-0.8
1,823,298	+				-0.2
1,823,355	+				+1.5
1,823,355	+				+4.5
1,823,397	+				-0.8
1,823,449	+				+0.5
1,823,503	+				+2.5
1,823,513	+				+0.4
1,823,538	+				-0.3
1,823,561	+				+1.6
1,823,561	-				+2.3
1,823,594	+				-0.5
1,823,594	+				-1.6
1,823,602	-				-1.5
1,823,602	-				-2.4
1,823,602	-				-0.5
1,823,606	+				+0.1
1,823,612	+				-2.7
1,823,679	+		BBR_RS17990	0.11	-1.2
1,823,709	+		BBR_RS17990	0.14	-0.4
1,823,714	+		BBR_RS17990	0.14	-1.0
1,823,732	+		BBR_RS17990	0.16	-0.2
1,823,736	+		BBR_RS17990	0.16	-1.7
1,823,842	-		BBR_RS17990	0.27	+1.0
1,823,843	-		BBR_RS17990	0.27	-0.4
1,823,844	+		BBR_RS17990	0.27	-1.9
1,823,844	+		BBR_RS17990	0.27	-1.9
1,823,846	+		BBR_RS17990	0.27	-1.2
1,823,854	+		BBR_RS17990	0.28	-2.1
1,823,854	-		BBR_RS17990	0.28	-1.2
1,823,890	-		BBR_RS17990	0.31	-0.3
1,823,894	+		BBR_RS17990	0.32	-2.6
1,823,894	+		BBR_RS17990	0.32	+0.3
1,823,939	+		BBR_RS17990	0.36	-2.1
1,823,939	+		BBR_RS17990	0.36	-0.1
1,823,947	-		BBR_RS17990	0.37	+1.8
1,823,991	+		BBR_RS17990	0.41	+1.0
1,824,035	-		BBR_RS17990	0.45	-2.0
1,824,047	+		BBR_RS17990	0.47	-1.7
1,824,061	-		BBR_RS17990	0.48	-2.2
1,824,078	+		BBR_RS17990	0.50	-1.2
1,824,119	+		BBR_RS17990	0.54	-1.6
1,824,124	+		BBR_RS17990	0.54	+0.4
1,824,127	-		BBR_RS17990	0.55	+1.3
1,824,127	-		BBR_RS17990	0.55	+0.8
1,824,132	-		BBR_RS17990	0.55	-0.4
1,824,144	-		BBR_RS17990	0.56	+0.3
1,824,189	+		BBR_RS17990	0.61	-1.1
1,824,189	+		BBR_RS17990	0.61	+2.4
1,824,195	-		BBR_RS17990	0.61	-1.0
1,824,195	-		BBR_RS17990	0.61	-1.1
1,824,224	+		BBR_RS17990	0.64	-0.7
1,824,224	+		BBR_RS17990	0.64	-0.9
1,824,226	+		BBR_RS17990	0.64	-0.5
1,824,232	-		BBR_RS17990	0.65	+1.2
1,824,244	+		BBR_RS17990	0.66	-2.0
1,824,244	+		BBR_RS17990	0.66	-0.5
1,824,252	-		BBR_RS17990	0.67	+0.8
1,824,259	-		BBR_RS17990	0.67	-1.0
1,824,273	+		BBR_RS17990	0.69	+1.8
1,824,276	-		BBR_RS17990	0.69	-0.2
1,824,292	+		BBR_RS17990	0.71	-1.4
1,824,302	+		BBR_RS17990	0.72	+1.0
1,824,378	+		BBR_RS17990	0.79	-1.5
1,824,386	-		BBR_RS17990	0.80	+0.4
1,824,386	-		BBR_RS17990	0.80	-0.7
1,824,386	-		BBR_RS17990	0.80	-0.0
1,824,386	-		BBR_RS17990	0.80	-0.7
1,824,387	+		BBR_RS17990	0.80	+0.3
1,824,431	+		BBR_RS17990	0.84	+0.8
1,824,431	+		BBR_RS17990	0.84	+1.8
1,824,433	-		BBR_RS17990	0.85	-0.4
1,824,439	-		BBR_RS17990	0.85	+1.5
1,824,455	+		BBR_RS17990	0.87	-1.3
1,824,455	+		BBR_RS17990	0.87	+2.7
1,824,464	+		BBR_RS17990	0.88	-0.4
1,824,494	+				-0.7
1,824,552	-				-0.8
1,824,584	+				-0.6
1,824,592	-				-0.4
1,824,592	-				+0.6
1,824,592	-				-0.3
1,824,619	-				+1.9
1,824,622	+				-2.2
1,824,658	+				-1.0
1,824,666	+				+1.3
1,824,685	+				-2.7
1,824,715	+				+2.0
1,824,723	-				+1.1
1,824,723	-				+1.0
1,824,735	-				-0.8
1,824,743	-				-1.4
1,824,804	+				+1.9
1,824,838	-				+0.1
1,824,954	+				+0.7
1,824,981	-				+2.2
1,825,006	-				+0.7
1,825,008	+				-1.3
1,825,008	+				+3.6
1,825,008	+				-0.8
1,825,008	+				-0.3
1,825,008	+				+2.2
1,825,008	+				+3.2
1,825,011	-				-0.1
1,825,011	-				+1.6
1,825,016	-				+0.5
1,825,016	-				+1.0
1,825,016	-				+3.1
1,825,055	+				+0.0
1,825,064	+				-0.4
1,825,064	+				-0.6
1,825,064	+				+2.3
1,825,072	-				+0.2
1,825,072	-				+2.3
1,825,072	-				-1.2
1,825,086	+				+0.1
1,825,107	+		BBR_RS17995	0.11	-0.2
1,825,145	+		BBR_RS17995	0.14	-0.6
1,825,160	-		BBR_RS17995	0.15	+1.8
1,825,180	+		BBR_RS17995	0.17	-1.3
1,825,197	-		BBR_RS17995	0.18	+1.1
1,825,204	-		BBR_RS17995	0.18	-0.9
1,825,208	-		BBR_RS17995	0.19	+2.0
1,825,257	+		BBR_RS17995	0.23	-0.1
1,825,338	-		BBR_RS17995	0.29	-1.4
1,825,354	+		BBR_RS17995	0.30	-1.5
1,825,354	+		BBR_RS17995	0.30	-0.4
1,825,377	+		BBR_RS17995	0.32	+2.9
1,825,377	+		BBR_RS17995	0.32	-0.4
1,825,377	+		BBR_RS17995	0.32	-1.6
1,825,377	+		BBR_RS17995	0.32	-0.8
1,825,377	+		BBR_RS17995	0.32	+4.5
1,825,377	+		BBR_RS17995	0.32	-1.1
1,825,385	-		BBR_RS17995	0.32	-0.6
1,825,385	-		BBR_RS17995	0.32	-0.0
1,825,385	-		BBR_RS17995	0.32	-1.3
1,825,385	-		BBR_RS17995	0.32	+0.9
1,825,385	-		BBR_RS17995	0.32	+2.2
1,825,400	-		BBR_RS17995	0.34	+2.8
1,825,469	+		BBR_RS17995	0.39	-0.1
1,825,475	-		BBR_RS17995	0.39	+2.3
1,825,477	-		BBR_RS17995	0.40	+3.0
1,825,487	-		BBR_RS17995	0.40	-0.6
1,825,487	-		BBR_RS17995	0.40	-0.9
1,825,510	+		BBR_RS17995	0.42	+0.8
1,825,522	+		BBR_RS17995	0.43	-1.0
1,825,526	+		BBR_RS17995	0.43	-1.0
1,825,534	-		BBR_RS17995	0.44	-0.6