Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14220

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14210 and BBR_RS14215 are separated by 21 nucleotidesBBR_RS14215 and BBR_RS14220 are separated by 151 nucleotidesBBR_RS14220 and BBR_RS14225 are separated by 71 nucleotidesBBR_RS14225 and BBR_RS14230 are separated by 57 nucleotides BBR_RS14210: BBR_RS14210 - hypothetical protein, at 963,532 to 965,073 _RS14210 BBR_RS14215: BBR_RS14215 - peptidase, at 965,095 to 965,457 _RS14215 BBR_RS14220: BBR_RS14220 - phosphomannomutase, at 965,609 to 966,412 _RS14220 BBR_RS14225: BBR_RS14225 - ComF family protein, at 966,484 to 967,158 _RS14225 BBR_RS14230: BBR_RS14230 - HAMP domain-containing histidine kinase, at 967,216 to 968,289 _RS14230 Position (kb) 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 965.078 kb on - strandat 965.129 kb on - strandat 965.220 kb on - strand, within BBR_RS14215at 965.232 kb on + strand, within BBR_RS14215at 965.235 kb on - strand, within BBR_RS14215at 965.240 kb on - strand, within BBR_RS14215at 965.358 kb on + strand, within BBR_RS14215at 965.358 kb on + strand, within BBR_RS14215at 965.361 kb on - strand, within BBR_RS14215at 965.454 kb on + strandat 965.471 kb on + strandat 965.472 kb on - strandat 965.479 kb on - strandat 965.503 kb on + strandat 965.570 kb on - strandat 965.589 kb on - strandat 965.620 kb on + strandat 965.673 kb on + strandat 965.678 kb on + strandat 965.681 kb on - strandat 965.700 kb on + strand, within BBR_RS14220at 965.700 kb on + strand, within BBR_RS14220at 965.703 kb on - strand, within BBR_RS14220at 965.708 kb on - strand, within BBR_RS14220at 965.710 kb on + strand, within BBR_RS14220at 965.786 kb on + strand, within BBR_RS14220at 965.810 kb on - strand, within BBR_RS14220at 965.834 kb on - strand, within BBR_RS14220at 965.862 kb on - strand, within BBR_RS14220at 965.865 kb on + strand, within BBR_RS14220at 965.883 kb on + strand, within BBR_RS14220at 965.891 kb on + strand, within BBR_RS14220at 965.897 kb on - strand, within BBR_RS14220at 965.919 kb on - strand, within BBR_RS14220at 965.961 kb on + strand, within BBR_RS14220at 965.984 kb on - strand, within BBR_RS14220at 966.096 kb on - strand, within BBR_RS14220at 966.113 kb on - strand, within BBR_RS14220at 966.215 kb on + strand, within BBR_RS14220at 966.222 kb on - strand, within BBR_RS14220at 966.222 kb on - strand, within BBR_RS14220at 966.222 kb on - strand, within BBR_RS14220at 966.234 kb on - strand, within BBR_RS14220at 966.281 kb on + strand, within BBR_RS14220at 966.299 kb on - strand, within BBR_RS14220at 966.367 kb on + strandat 966.367 kb on + strandat 966.386 kb on - strandat 966.391 kb on + strandat 966.409 kb on - strandat 966.509 kb on - strandat 966.528 kb on - strandat 966.530 kb on + strandat 966.546 kb on - strandat 966.546 kb on - strandat 966.551 kb on - strandat 966.551 kb on - strandat 966.627 kb on + strand, within BBR_RS14225at 966.635 kb on - strand, within BBR_RS14225at 966.635 kb on - strand, within BBR_RS14225at 966.732 kb on - strand, within BBR_RS14225at 966.830 kb on + strand, within BBR_RS14225at 966.833 kb on - strand, within BBR_RS14225at 966.840 kb on - strand, within BBR_RS14225at 966.863 kb on - strand, within BBR_RS14225at 966.863 kb on - strand, within BBR_RS14225at 966.926 kb on - strand, within BBR_RS14225at 967.025 kb on + strand, within BBR_RS14225at 967.039 kb on - strand, within BBR_RS14225at 967.053 kb on + strand, within BBR_RS14225at 967.064 kb on + strand, within BBR_RS14225at 967.074 kb on + strand, within BBR_RS14225at 967.106 kb on + strandat 967.208 kb on + strandat 967.278 kb on + strandat 967.284 kb on + strandat 967.332 kb on + strand, within BBR_RS14230at 967.340 kb on - strand, within BBR_RS14230at 967.360 kb on + strand, within BBR_RS14230at 967.365 kb on + strand, within BBR_RS14230

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
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965,078 - -0.6
965,129 - +1.3
965,220 - BBR_RS14215 0.34 +0.5
965,232 + BBR_RS14215 0.38 +0.9
965,235 - BBR_RS14215 0.39 +3.4
965,240 - BBR_RS14215 0.40 +0.9
965,358 + BBR_RS14215 0.72 +0.3
965,358 + BBR_RS14215 0.72 -0.3
965,361 - BBR_RS14215 0.73 +1.3
965,454 + +0.9
965,471 + -0.9
965,472 - +4.1
965,479 - +1.7
965,503 + -2.2
965,570 - -2.1
965,589 - +0.6
965,620 + -1.0
965,673 + +2.3
965,678 + -1.6
965,681 - +0.5
965,700 + BBR_RS14220 0.11 -0.8
965,700 + BBR_RS14220 0.11 -0.6
965,703 - BBR_RS14220 0.12 +0.1
965,708 - BBR_RS14220 0.12 +0.3
965,710 + BBR_RS14220 0.13 -1.7
965,786 + BBR_RS14220 0.22 -0.6
965,810 - BBR_RS14220 0.25 -1.0
965,834 - BBR_RS14220 0.28 +0.3
965,862 - BBR_RS14220 0.31 -0.5
965,865 + BBR_RS14220 0.32 -1.1
965,883 + BBR_RS14220 0.34 -0.3
965,891 + BBR_RS14220 0.35 -1.3
965,897 - BBR_RS14220 0.36 -0.9
965,919 - BBR_RS14220 0.39 +0.0
965,961 + BBR_RS14220 0.44 -1.8
965,984 - BBR_RS14220 0.47 +0.5
966,096 - BBR_RS14220 0.61 +0.5
966,113 - BBR_RS14220 0.63 +0.1
966,215 + BBR_RS14220 0.75 -1.2
966,222 - BBR_RS14220 0.76 -0.2
966,222 - BBR_RS14220 0.76 +2.5
966,222 - BBR_RS14220 0.76 +0.1
966,234 - BBR_RS14220 0.78 +1.7
966,281 + BBR_RS14220 0.84 -1.0
966,299 - BBR_RS14220 0.86 +0.4
966,367 + -2.8
966,367 + -2.0
966,386 - +2.3
966,391 + +0.4
966,409 - +0.6
966,509 - +1.1
966,528 - -1.0
966,530 + +1.7
966,546 - +1.2
966,546 - +3.6
966,551 - -0.0
966,551 - +2.0
966,627 + BBR_RS14225 0.21 +0.2
966,635 - BBR_RS14225 0.22 +0.6
966,635 - BBR_RS14225 0.22 +2.4
966,732 - BBR_RS14225 0.37 -1.8
966,830 + BBR_RS14225 0.51 -1.6
966,833 - BBR_RS14225 0.52 +1.3
966,840 - BBR_RS14225 0.53 -0.1
966,863 - BBR_RS14225 0.56 -2.3
966,863 - BBR_RS14225 0.56 +0.5
966,926 - BBR_RS14225 0.65 +0.1
967,025 + BBR_RS14225 0.80 -0.5
967,039 - BBR_RS14225 0.82 +0.9
967,053 + BBR_RS14225 0.84 -0.9
967,064 + BBR_RS14225 0.86 -0.6
967,074 + BBR_RS14225 0.87 -0.7
967,106 + -1.3
967,208 + +4.6
967,278 + +2.0
967,284 + +3.1
967,332 + BBR_RS14230 0.11 +0.4
967,340 - BBR_RS14230 0.12 +0.7
967,360 + BBR_RS14230 0.13 +0.9
967,365 + BBR_RS14230 0.14 +0.3

Or see this region's nucleotide sequence