Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13735 and BBR_RS13740 are separated by 91 nucleotides BBR_RS13740 and BBR_RS13745 are separated by 107 nucleotides BBR_RS13745 and BBR_RS13750 are separated by 143 nucleotides BBR_RS13750 and BBR_RS13755 overlap by 4 nucleotides
BBR_RS13735: BBR_RS13735 - Lon protease, at 855,435 to 856,358
_RS13735
BBR_RS13740: BBR_RS13740 - DUF3052 domain-containing protein, at 856,450 to 856,866
_RS13740
BBR_RS13745: BBR_RS13745 - tRNA-Val, at 856,974 to 857,047
_RS13745
BBR_RS13750: BBR_RS13750 - DivIVA domain-containing protein, at 857,191 to 858,789
_RS13750
BBR_RS13755: BBR_RS13755 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 858,786 to 859,976
_RS13755
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 856.326 kb on - strand at 856.462 kb on + strand at 856.506 kb on - strand, within BBR_RS13740 at 856.507 kb on + strand, within BBR_RS13740 at 856.518 kb on + strand, within BBR_RS13740 at 856.566 kb on + strand, within BBR_RS13740 at 856.594 kb on + strand, within BBR_RS13740 at 856.594 kb on + strand, within BBR_RS13740 at 856.659 kb on + strand, within BBR_RS13740 at 856.659 kb on + strand, within BBR_RS13740 at 856.687 kb on - strand, within BBR_RS13740 at 856.774 kb on + strand, within BBR_RS13740 at 856.811 kb on + strand, within BBR_RS13740 at 856.904 kb on + strand at 856.933 kb on + strand at 856.951 kb on - strand at 857.012 kb on - strand, within BBR_RS13745 at 857.017 kb on + strand, within BBR_RS13745 at 857.061 kb on + strand at 857.080 kb on + strand at 857.128 kb on + strand at 857.148 kb on + strand at 857.148 kb on + strand at 857.156 kb on - strand at 857.928 kb on + strand, within BBR_RS13750 at 858.158 kb on + strand, within BBR_RS13750 at 858.194 kb on + strand, within BBR_RS13750 at 858.620 kb on + strand, within BBR_RS13750 at 858.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 remove 856,326 - -0.6 856,462 + +0.3 856,506 - BBR_RS13740 0.13 +0.1 856,507 + BBR_RS13740 0.14 +1.7 856,518 + BBR_RS13740 0.16 -1.5 856,566 + BBR_RS13740 0.28 -1.0 856,594 + BBR_RS13740 0.35 -0.6 856,594 + BBR_RS13740 0.35 +0.4 856,659 + BBR_RS13740 0.50 +1.9 856,659 + BBR_RS13740 0.50 +1.4 856,687 - BBR_RS13740 0.57 +0.6 856,774 + BBR_RS13740 0.78 +0.7 856,811 + BBR_RS13740 0.87 +0.9 856,904 + +1.0 856,933 + -0.5 856,951 - +0.6 857,012 - BBR_RS13745 0.51 +4.4 857,017 + BBR_RS13745 0.58 +1.7 857,061 + -1.2 857,080 + +0.7 857,128 + +0.1 857,148 + -0.8 857,148 + -0.1 857,156 - -1.3 857,928 + BBR_RS13750 0.46 +1.0 858,158 + BBR_RS13750 0.60 -0.0 858,194 + BBR_RS13750 0.63 +1.0 858,620 + BBR_RS13750 0.89 -2.8 858,634 + +2.5
Or see this region's nucleotide sequence