Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12995

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12985 and BBR_RS12990 are separated by 87 nucleotidesBBR_RS12990 and BBR_RS12995 are separated by 105 nucleotidesBBR_RS12995 and BBR_RS13000 are separated by 79 nucleotides BBR_RS12985: BBR_RS12985 - MFS transporter, at 683,285 to 684,604 _RS12985 BBR_RS12990: BBR_RS12990 - 4-hydroxy-tetrahydrodipicolinate reductase, at 684,692 to 685,447 _RS12990 BBR_RS12995: BBR_RS12995 - 4-hydroxy-tetrahydrodipicolinate synthase, at 685,553 to 686,458 _RS12995 BBR_RS13000: BBR_RS13000 - RNase J family beta-CASP ribonuclease, at 686,538 to 688,394 _RS13000 Position (kb) 685 686 687Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 684.558 kb on - strandat 684.573 kb on - strandat 684.584 kb on - strandat 684.599 kb on + strandat 684.599 kb on + strandat 684.607 kb on - strandat 684.607 kb on - strandat 684.694 kb on + strandat 684.735 kb on + strandat 684.749 kb on + strandat 684.749 kb on + strandat 684.803 kb on + strand, within BBR_RS12990at 684.808 kb on + strand, within BBR_RS12990at 684.831 kb on - strand, within BBR_RS12990at 684.856 kb on + strand, within BBR_RS12990at 684.874 kb on - strand, within BBR_RS12990at 684.879 kb on - strand, within BBR_RS12990at 684.887 kb on - strand, within BBR_RS12990at 684.908 kb on - strand, within BBR_RS12990at 684.925 kb on + strand, within BBR_RS12990at 684.926 kb on - strand, within BBR_RS12990at 684.929 kb on - strand, within BBR_RS12990at 684.952 kb on + strand, within BBR_RS12990at 684.960 kb on - strand, within BBR_RS12990at 684.960 kb on - strand, within BBR_RS12990at 684.960 kb on - strand, within BBR_RS12990at 684.960 kb on - strand, within BBR_RS12990at 684.990 kb on + strand, within BBR_RS12990at 684.997 kb on + strand, within BBR_RS12990at 685.015 kb on - strand, within BBR_RS12990at 685.077 kb on + strand, within BBR_RS12990at 685.091 kb on + strand, within BBR_RS12990at 685.096 kb on + strand, within BBR_RS12990at 685.105 kb on + strand, within BBR_RS12990at 685.113 kb on - strand, within BBR_RS12990at 685.113 kb on - strand, within BBR_RS12990at 685.123 kb on + strand, within BBR_RS12990at 685.131 kb on - strand, within BBR_RS12990at 685.139 kb on - strand, within BBR_RS12990at 685.145 kb on + strand, within BBR_RS12990at 685.145 kb on + strand, within BBR_RS12990at 685.145 kb on + strand, within BBR_RS12990at 685.145 kb on + strand, within BBR_RS12990at 685.145 kb on + strand, within BBR_RS12990at 685.153 kb on - strand, within BBR_RS12990at 685.153 kb on - strand, within BBR_RS12990at 685.153 kb on - strand, within BBR_RS12990at 685.178 kb on - strand, within BBR_RS12990at 685.229 kb on - strand, within BBR_RS12990at 685.249 kb on + strand, within BBR_RS12990at 685.257 kb on - strand, within BBR_RS12990at 685.280 kb on - strand, within BBR_RS12990at 685.280 kb on - strand, within BBR_RS12990at 685.289 kb on - strand, within BBR_RS12990at 685.297 kb on - strand, within BBR_RS12990at 685.409 kb on + strandat 685.412 kb on - strandat 685.412 kb on - strandat 685.434 kb on + strandat 685.456 kb on - strandat 685.517 kb on + strandat 685.520 kb on + strandat 685.541 kb on + strandat 685.549 kb on + strandat 685.549 kb on + strandat 685.551 kb on + strandat 685.557 kb on - strandat 685.701 kb on + strand, within BBR_RS12995at 685.701 kb on + strand, within BBR_RS12995at 685.738 kb on + strand, within BBR_RS12995at 685.764 kb on - strand, within BBR_RS12995at 685.765 kb on + strand, within BBR_RS12995at 685.784 kb on + strand, within BBR_RS12995at 685.855 kb on + strand, within BBR_RS12995at 685.859 kb on + strand, within BBR_RS12995at 685.976 kb on + strand, within BBR_RS12995at 686.008 kb on + strand, within BBR_RS12995at 686.014 kb on + strand, within BBR_RS12995at 686.014 kb on + strand, within BBR_RS12995at 686.014 kb on + strand, within BBR_RS12995at 686.014 kb on + strand, within BBR_RS12995at 686.021 kb on + strand, within BBR_RS12995at 686.021 kb on + strand, within BBR_RS12995at 686.022 kb on + strand, within BBR_RS12995at 686.050 kb on + strand, within BBR_RS12995at 686.050 kb on + strand, within BBR_RS12995at 686.050 kb on + strand, within BBR_RS12995at 686.119 kb on + strand, within BBR_RS12995at 686.327 kb on + strand, within BBR_RS12995at 686.337 kb on + strand, within BBR_RS12995at 686.421 kb on + strandat 686.442 kb on + strandat 686.442 kb on + strandat 686.442 kb on + strandat 686.452 kb on + strandat 686.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
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684,558 - -0.4
684,573 - +0.8
684,584 - -0.7
684,599 + +1.8
684,599 + -0.1
684,607 - -1.0
684,607 - -0.4
684,694 + -2.3
684,735 + +0.4
684,749 + +1.5
684,749 + +1.4
684,803 + BBR_RS12990 0.15 -0.8
684,808 + BBR_RS12990 0.15 -0.8
684,831 - BBR_RS12990 0.18 -1.7
684,856 + BBR_RS12990 0.22 +0.3
684,874 - BBR_RS12990 0.24 -0.4
684,879 - BBR_RS12990 0.25 -1.2
684,887 - BBR_RS12990 0.26 -1.7
684,908 - BBR_RS12990 0.29 -1.0
684,925 + BBR_RS12990 0.31 +2.3
684,926 - BBR_RS12990 0.31 -1.0
684,929 - BBR_RS12990 0.31 +0.8
684,952 + BBR_RS12990 0.34 -1.4
684,960 - BBR_RS12990 0.35 +2.5
684,960 - BBR_RS12990 0.35 -1.6
684,960 - BBR_RS12990 0.35 +2.1
684,960 - BBR_RS12990 0.35 +2.7
684,990 + BBR_RS12990 0.39 +2.5
684,997 + BBR_RS12990 0.40 -1.3
685,015 - BBR_RS12990 0.43 -1.8
685,077 + BBR_RS12990 0.51 +1.0
685,091 + BBR_RS12990 0.53 +0.4
685,096 + BBR_RS12990 0.53 -0.8
685,105 + BBR_RS12990 0.55 +0.0
685,113 - BBR_RS12990 0.56 +0.5
685,113 - BBR_RS12990 0.56 +2.3
685,123 + BBR_RS12990 0.57 +0.4
685,131 - BBR_RS12990 0.58 -0.4
685,139 - BBR_RS12990 0.59 -1.6
685,145 + BBR_RS12990 0.60 +2.2
685,145 + BBR_RS12990 0.60 -0.0
685,145 + BBR_RS12990 0.60 +2.6
685,145 + BBR_RS12990 0.60 -0.7
685,145 + BBR_RS12990 0.60 -1.0
685,153 - BBR_RS12990 0.61 +0.3
685,153 - BBR_RS12990 0.61 +2.1
685,153 - BBR_RS12990 0.61 -0.3
685,178 - BBR_RS12990 0.64 -0.4
685,229 - BBR_RS12990 0.71 -1.3
685,249 + BBR_RS12990 0.74 -1.4
685,257 - BBR_RS12990 0.75 +0.1
685,280 - BBR_RS12990 0.78 +2.6
685,280 - BBR_RS12990 0.78 +0.2
685,289 - BBR_RS12990 0.79 +0.8
685,297 - BBR_RS12990 0.80 -2.1
685,409 + +0.2
685,412 - -0.1
685,412 - -0.7
685,434 + +6.2
685,456 - -1.2
685,517 + +1.1
685,520 + -0.1
685,541 + +1.7
685,549 + -0.5
685,549 + +1.9
685,551 + -1.4
685,557 - -0.1
685,701 + BBR_RS12995 0.16 -1.0
685,701 + BBR_RS12995 0.16 -1.3
685,738 + BBR_RS12995 0.20 -0.4
685,764 - BBR_RS12995 0.23 +1.6
685,765 + BBR_RS12995 0.23 +0.7
685,784 + BBR_RS12995 0.25 -1.0
685,855 + BBR_RS12995 0.33 +2.2
685,859 + BBR_RS12995 0.34 -1.3
685,976 + BBR_RS12995 0.47 -0.6
686,008 + BBR_RS12995 0.50 -1.2
686,014 + BBR_RS12995 0.51 -0.1
686,014 + BBR_RS12995 0.51 -1.2
686,014 + BBR_RS12995 0.51 -0.9
686,014 + BBR_RS12995 0.51 -1.3
686,021 + BBR_RS12995 0.52 -1.9
686,021 + BBR_RS12995 0.52 -0.7
686,022 + BBR_RS12995 0.52 +0.1
686,050 + BBR_RS12995 0.55 -1.4
686,050 + BBR_RS12995 0.55 -1.5
686,050 + BBR_RS12995 0.55 -0.7
686,119 + BBR_RS12995 0.62 -0.9
686,327 + BBR_RS12995 0.85 +0.7
686,337 + BBR_RS12995 0.87 +4.4
686,421 + +0.3
686,442 + +3.7
686,442 + +1.6
686,442 + +1.0
686,452 + +0.1
686,452 + -0.3

Or see this region's nucleotide sequence