Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12780

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12770 and BBR_RS12775 are separated by 469 nucleotidesBBR_RS12775 and BBR_RS12780 are separated by 0 nucleotidesBBR_RS12780 and BBR_RS12785 are separated by 63 nucleotidesBBR_RS12785 and BBR_RS12790 overlap by 4 nucleotides BBR_RS12770: BBR_RS12770 - hypothetical protein, at 616,977 to 617,183 _RS12770 BBR_RS12775: BBR_RS12775 - hypothetical protein, at 617,653 to 618,066 _RS12775 BBR_RS12780: BBR_RS12780 - hypothetical protein, at 618,067 to 618,603 _RS12780 BBR_RS12785: BBR_RS12785 - transcriptional regulator, at 618,667 to 619,161 _RS12785 BBR_RS12790: BBR_RS12790 - hypothetical protein, at 619,158 to 619,547 _RS12790 Position (kb) 618 619Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 617.067 kb on + strand, within BBR_RS12770at 617.085 kb on + strand, within BBR_RS12770at 617.093 kb on - strand, within BBR_RS12770at 617.103 kb on - strand, within BBR_RS12770at 617.143 kb on - strand, within BBR_RS12770at 617.177 kb on + strandat 617.215 kb on - strandat 617.215 kb on - strandat 617.221 kb on - strandat 617.261 kb on + strandat 617.263 kb on + strandat 617.294 kb on - strandat 617.343 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.351 kb on - strandat 617.353 kb on + strandat 617.353 kb on + strandat 617.415 kb on + strandat 617.439 kb on + strandat 617.454 kb on - strandat 617.462 kb on - strandat 617.529 kb on + strandat 617.555 kb on - strandat 617.560 kb on + strandat 617.601 kb on - strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.672 kb on + strandat 617.680 kb on - strandat 617.735 kb on + strand, within BBR_RS12775at 617.803 kb on - strand, within BBR_RS12775at 617.863 kb on + strand, within BBR_RS12775at 617.865 kb on - strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.936 kb on + strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 618.019 kb on + strand, within BBR_RS12775at 618.021 kb on + strand, within BBR_RS12775at 618.038 kb on + strandat 618.055 kb on + strandat 618.110 kb on - strandat 618.115 kb on - strandat 618.157 kb on - strand, within BBR_RS12780at 618.169 kb on - strand, within BBR_RS12780at 618.264 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.333 kb on - strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.343 kb on - strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.434 kb on + strand, within BBR_RS12780at 618.449 kb on + strand, within BBR_RS12780at 618.481 kb on + strand, within BBR_RS12780at 618.588 kb on + strandat 618.593 kb on + strandat 618.657 kb on + strandat 618.657 kb on + strandat 618.665 kb on - strandat 618.763 kb on + strand, within BBR_RS12785at 618.947 kb on + strand, within BBR_RS12785at 619.071 kb on + strand, within BBR_RS12785at 619.076 kb on + strand, within BBR_RS12785at 619.103 kb on + strand, within BBR_RS12785at 619.103 kb on + strand, within BBR_RS12785at 619.106 kb on + strand, within BBR_RS12785at 619.112 kb on - strandat 619.163 kb on + strandat 619.163 kb on + strandat 619.547 kb on + strandat 619.550 kb on - strandat 619.582 kb on + strandat 619.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
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617,067 + BBR_RS12770 0.43 +2.2
617,085 + BBR_RS12770 0.52 +1.3
617,093 - BBR_RS12770 0.56 +3.6
617,103 - BBR_RS12770 0.61 +2.8
617,143 - BBR_RS12770 0.80 -1.4
617,177 + +5.2
617,215 - +2.8
617,215 - +1.3
617,221 - -0.7
617,261 + +1.8
617,263 + -1.0
617,294 - +2.0
617,343 + -0.4
617,345 + -1.7
617,345 + +0.3
617,345 + +2.4
617,351 - -0.7
617,353 + +0.6
617,353 + +1.4
617,415 + -2.0
617,439 + -2.2
617,454 - +2.8
617,462 - +1.3
617,529 + -1.1
617,555 - +0.3
617,560 + -1.1
617,601 - -1.1
617,627 + -0.5
617,627 + -0.2
617,627 + +0.0
617,627 + -0.9
617,627 + -1.7
617,672 + -0.7
617,680 - +1.1
617,735 + BBR_RS12775 0.20 +0.2
617,803 - BBR_RS12775 0.36 -2.0
617,863 + BBR_RS12775 0.51 +0.1
617,865 - BBR_RS12775 0.51 -0.5
617,928 + BBR_RS12775 0.66 -0.5
617,928 + BBR_RS12775 0.66 +2.9
617,928 + BBR_RS12775 0.66 +0.0
617,928 + BBR_RS12775 0.66 +1.0
617,928 + BBR_RS12775 0.66 -0.4
617,936 + BBR_RS12775 0.68 +2.9
617,936 - BBR_RS12775 0.68 +1.7
617,936 - BBR_RS12775 0.68 -0.4
617,936 - BBR_RS12775 0.68 -0.3
618,019 + BBR_RS12775 0.88 -0.0
618,021 + BBR_RS12775 0.89 -0.0
618,038 + -0.6
618,055 + -0.4
618,110 - -1.7
618,115 - -1.0
618,157 - BBR_RS12780 0.17 -0.3
618,169 - BBR_RS12780 0.19 -0.7
618,264 + BBR_RS12780 0.37 -0.9
618,317 + BBR_RS12780 0.47 -1.3
618,317 + BBR_RS12780 0.47 -0.9
618,333 - BBR_RS12780 0.50 -0.4
618,335 + BBR_RS12780 0.50 +1.7
618,335 + BBR_RS12780 0.50 -0.4
618,335 + BBR_RS12780 0.50 +0.0
618,343 - BBR_RS12780 0.51 -1.2
618,408 + BBR_RS12780 0.64 +0.0
618,408 + BBR_RS12780 0.64 +1.4
618,434 + BBR_RS12780 0.68 -0.9
618,449 + BBR_RS12780 0.71 -0.7
618,481 + BBR_RS12780 0.77 -0.3
618,588 + -0.7
618,593 + -1.4
618,657 + +1.8
618,657 + -0.8
618,665 - +1.1
618,763 + BBR_RS12785 0.19 +2.7
618,947 + BBR_RS12785 0.57 +1.4
619,071 + BBR_RS12785 0.82 -1.1
619,076 + BBR_RS12785 0.83 -2.6
619,103 + BBR_RS12785 0.88 +0.3
619,103 + BBR_RS12785 0.88 +2.6
619,106 + BBR_RS12785 0.89 -0.7
619,112 - +3.2
619,163 + -1.1
619,163 + +2.4
619,547 + +2.1
619,550 - -0.8
619,582 + -1.0
619,585 - -2.3

Or see this region's nucleotide sequence