Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12610

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS12605 and BBR_RS12610 overlap by 4 nucleotidesBBR_RS12610 and BBR_RS20720 overlap by 14 nucleotidesBBR_RS20720 and BBR_RS12620 are separated by 27 nucleotides BBR_RS12600: BBR_RS12600 - serine acetyltransferase, at 583,628 to 584,092 _RS12600 BBR_RS12605: BBR_RS12605 - glycosyltransferase family 2 protein, at 584,085 to 585,095 _RS12605 BBR_RS12610: BBR_RS12610 - capsular polysaccharide biosynthesis protein, at 585,092 to 586,027 _RS12610 BBR_RS20720: BBR_RS20720 - DUF4422 domain-containing protein, at 586,014 to 586,844 _RS20720 BBR_RS12620: BBR_RS12620 - glycosyltransferase family 1 protein, at 586,872 to 587,945 _RS12620 Position (kb) 585 586 587Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 584.150 kb on + strandat 584.171 kb on - strandat 584.201 kb on - strand, within BBR_RS12605at 584.441 kb on - strand, within BBR_RS12605at 584.474 kb on + strand, within BBR_RS12605at 584.482 kb on - strand, within BBR_RS12605at 584.482 kb on - strand, within BBR_RS12605at 584.504 kb on + strand, within BBR_RS12605at 584.565 kb on - strand, within BBR_RS12605at 584.742 kb on - strand, within BBR_RS12605at 585.106 kb on + strandat 585.197 kb on - strand, within BBR_RS12610at 585.216 kb on - strand, within BBR_RS12610at 585.274 kb on - strand, within BBR_RS12610at 585.282 kb on - strand, within BBR_RS12610at 585.342 kb on + strand, within BBR_RS12610at 585.355 kb on - strand, within BBR_RS12610at 585.434 kb on + strand, within BBR_RS12610at 585.505 kb on + strand, within BBR_RS12610at 585.605 kb on - strand, within BBR_RS12610at 585.672 kb on - strand, within BBR_RS12610at 585.769 kb on - strand, within BBR_RS12610at 585.778 kb on + strand, within BBR_RS12610at 585.786 kb on - strand, within BBR_RS12610at 585.832 kb on + strand, within BBR_RS12610at 585.896 kb on - strand, within BBR_RS12610at 585.953 kb on - strandat 585.953 kb on - strandat 585.973 kb on - strandat 585.981 kb on + strandat 585.989 kb on - strandat 585.989 kb on - strandat 585.991 kb on - strandat 586.002 kb on + strandat 586.010 kb on - strandat 586.010 kb on - strandat 586.010 kb on - strandat 586.010 kb on - strandat 586.010 kb on - strandat 586.043 kb on - strandat 586.056 kb on - strandat 586.061 kb on + strandat 586.083 kb on - strandat 586.101 kb on - strand, within BBR_RS20720at 586.153 kb on + strand, within BBR_RS20720at 586.153 kb on + strand, within BBR_RS20720at 586.161 kb on - strand, within BBR_RS20720at 586.171 kb on + strand, within BBR_RS20720at 586.240 kb on - strand, within BBR_RS20720at 586.251 kb on - strand, within BBR_RS20720at 586.272 kb on - strand, within BBR_RS20720at 586.366 kb on + strand, within BBR_RS20720at 586.458 kb on - strand, within BBR_RS20720at 586.458 kb on - strand, within BBR_RS20720at 586.502 kb on + strand, within BBR_RS20720at 586.597 kb on + strand, within BBR_RS20720at 586.636 kb on - strand, within BBR_RS20720at 586.636 kb on - strand, within BBR_RS20720at 586.679 kb on - strand, within BBR_RS20720at 586.789 kb on + strandat 586.789 kb on - strandat 586.819 kb on - strandat 586.819 kb on - strandat 586.855 kb on - strandat 586.888 kb on + strandat 586.888 kb on + strandat 586.896 kb on - strandat 586.901 kb on - strandat 586.906 kb on + strandat 586.906 kb on - strandat 586.908 kb on + strandat 586.916 kb on - strandat 586.921 kb on - strandat 586.924 kb on - strandat 586.951 kb on + strandat 586.959 kb on - strandat 586.969 kb on - strandat 586.969 kb on - strandat 586.982 kb on - strand, within BBR_RS12620at 586.983 kb on - strand, within BBR_RS12620at 586.983 kb on - strand, within BBR_RS12620at 587.001 kb on - strand, within BBR_RS12620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
remove
584,150 + +0.7
584,171 - -0.5
584,201 - BBR_RS12605 0.11 -1.2
584,441 - BBR_RS12605 0.35 -0.9
584,474 + BBR_RS12605 0.38 +0.4
584,482 - BBR_RS12605 0.39 +2.3
584,482 - BBR_RS12605 0.39 +1.6
584,504 + BBR_RS12605 0.41 +2.3
584,565 - BBR_RS12605 0.47 -1.4
584,742 - BBR_RS12605 0.65 +2.3
585,106 + +3.1
585,197 - BBR_RS12610 0.11 +2.0
585,216 - BBR_RS12610 0.13 +1.0
585,274 - BBR_RS12610 0.19 +0.3
585,282 - BBR_RS12610 0.20 +1.3
585,342 + BBR_RS12610 0.27 +0.2
585,355 - BBR_RS12610 0.28 -1.4
585,434 + BBR_RS12610 0.37 +1.7
585,505 + BBR_RS12610 0.44 +2.1
585,605 - BBR_RS12610 0.55 -0.7
585,672 - BBR_RS12610 0.62 -0.0
585,769 - BBR_RS12610 0.72 -1.3
585,778 + BBR_RS12610 0.73 +2.3
585,786 - BBR_RS12610 0.74 -0.2
585,832 + BBR_RS12610 0.79 +0.4
585,896 - BBR_RS12610 0.86 -1.8
585,953 - -0.4
585,953 - -0.6
585,973 - -0.7
585,981 + -0.9
585,989 - +2.4
585,989 - +0.0
585,991 - -1.2
586,002 + -0.9
586,010 - -1.0
586,010 - -0.9
586,010 - -0.4
586,010 - -0.9
586,010 - -1.5
586,043 - -2.1
586,056 - +0.9
586,061 + -0.1
586,083 - -0.6
586,101 - BBR_RS20720 0.10 +2.6
586,153 + BBR_RS20720 0.17 +0.3
586,153 + BBR_RS20720 0.17 +1.7
586,161 - BBR_RS20720 0.18 -0.5
586,171 + BBR_RS20720 0.19 +1.2
586,240 - BBR_RS20720 0.27 +2.4
586,251 - BBR_RS20720 0.29 +0.5
586,272 - BBR_RS20720 0.31 +0.3
586,366 + BBR_RS20720 0.42 +0.4
586,458 - BBR_RS20720 0.53 -1.4
586,458 - BBR_RS20720 0.53 -1.3
586,502 + BBR_RS20720 0.59 +0.6
586,597 + BBR_RS20720 0.70 -0.4
586,636 - BBR_RS20720 0.75 -0.0
586,636 - BBR_RS20720 0.75 -0.2
586,679 - BBR_RS20720 0.80 -1.0
586,789 + +2.3
586,789 - +2.4
586,819 - +0.1
586,819 - -0.0
586,855 - -1.5
586,888 + -0.2
586,888 + +4.1
586,896 - -1.1
586,901 - -2.6
586,906 + -1.0
586,906 - -2.0
586,908 + +1.4
586,916 - +1.7
586,921 - +0.0
586,924 - -2.0
586,951 + +0.3
586,959 - +2.6
586,969 - -1.2
586,969 - +1.1
586,982 - BBR_RS12620 0.10 -3.5
586,983 - BBR_RS12620 0.10 -1.0
586,983 - BBR_RS12620 0.10 -1.3
587,001 - BBR_RS12620 0.12 -0.6

Or see this region's nucleotide sequence