Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12375 and BBR_RS12380 are separated by 104 nucleotides BBR_RS12380 and BBR_RS12385 are separated by 195 nucleotides BBR_RS12385 and BBR_RS12390 are separated by 258 nucleotides BBR_RS12390 and BBR_RS12395 are separated by 7 nucleotides
BBR_RS12375: BBR_RS12375 - pantetheine-phosphate adenylyltransferase, at 526,885 to 527,385
_RS12375
BBR_RS12380: BBR_RS12380 - DUF3039 domain-containing protein, at 527,490 to 527,771
_RS12380
BBR_RS12385: BBR_RS12385 - oxidoreductase, at 527,967 to 528,977
_RS12385
BBR_RS12390: BBR_RS12390 - MerR family transcriptional regulator, at 529,236 to 529,664
_RS12390
BBR_RS12395: BBR_RS12395 - hypothetical protein, at 529,672 to 530,298
_RS12395
Position (kb) 527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 527.083 kb on - strand, within BBR_RS12375 at 527.125 kb on - strand, within BBR_RS12375 at 527.212 kb on - strand, within BBR_RS12375 at 527.388 kb on + strand at 527.388 kb on - strand at 527.420 kb on - strand at 527.420 kb on - strand at 527.420 kb on - strand at 527.422 kb on + strand at 527.422 kb on + strand at 527.422 kb on + strand at 527.430 kb on - strand at 527.506 kb on + strand at 527.514 kb on + strand at 527.540 kb on + strand, within BBR_RS12380 at 527.558 kb on - strand, within BBR_RS12380 at 527.561 kb on + strand, within BBR_RS12380 at 527.574 kb on - strand, within BBR_RS12380 at 527.629 kb on - strand, within BBR_RS12380 at 527.636 kb on + strand, within BBR_RS12380 at 527.666 kb on + strand, within BBR_RS12380 at 527.671 kb on + strand, within BBR_RS12380 at 527.685 kb on + strand, within BBR_RS12380 at 527.698 kb on - strand, within BBR_RS12380 at 527.704 kb on + strand, within BBR_RS12380 at 527.704 kb on + strand, within BBR_RS12380 at 527.704 kb on + strand, within BBR_RS12380 at 527.712 kb on + strand, within BBR_RS12380 at 527.712 kb on - strand, within BBR_RS12380 at 527.734 kb on - strand, within BBR_RS12380 at 527.835 kb on - strand at 527.886 kb on - strand at 527.897 kb on + strand at 527.913 kb on + strand at 527.915 kb on + strand at 527.916 kb on - strand at 528.000 kb on - strand at 528.022 kb on - strand at 528.039 kb on - strand at 528.067 kb on + strand at 528.082 kb on + strand, within BBR_RS12385 at 528.082 kb on + strand, within BBR_RS12385 at 528.090 kb on - strand, within BBR_RS12385 at 528.090 kb on - strand, within BBR_RS12385 at 528.104 kb on - strand, within BBR_RS12385 at 528.107 kb on - strand, within BBR_RS12385 at 528.114 kb on - strand, within BBR_RS12385 at 528.139 kb on - strand, within BBR_RS12385 at 528.140 kb on - strand, within BBR_RS12385 at 528.142 kb on + strand, within BBR_RS12385 at 528.150 kb on - strand, within BBR_RS12385 at 528.173 kb on - strand, within BBR_RS12385 at 528.180 kb on - strand, within BBR_RS12385 at 528.180 kb on - strand, within BBR_RS12385 at 528.252 kb on + strand, within BBR_RS12385 at 528.280 kb on + strand, within BBR_RS12385 at 528.310 kb on + strand, within BBR_RS12385 at 528.320 kb on + strand, within BBR_RS12385 at 528.328 kb on - strand, within BBR_RS12385 at 528.328 kb on - strand, within BBR_RS12385 at 528.331 kb on + strand, within BBR_RS12385 at 528.343 kb on - strand, within BBR_RS12385 at 528.348 kb on + strand, within BBR_RS12385 at 528.363 kb on + strand, within BBR_RS12385 at 528.372 kb on + strand, within BBR_RS12385 at 528.381 kb on + strand, within BBR_RS12385 at 528.386 kb on + strand, within BBR_RS12385 at 528.386 kb on + strand, within BBR_RS12385 at 528.394 kb on - strand, within BBR_RS12385 at 528.427 kb on - strand, within BBR_RS12385 at 528.430 kb on + strand, within BBR_RS12385 at 528.441 kb on + strand, within BBR_RS12385 at 528.464 kb on + strand, within BBR_RS12385 at 528.464 kb on + strand, within BBR_RS12385 at 528.464 kb on + strand, within BBR_RS12385 at 528.464 kb on + strand, within BBR_RS12385 at 528.472 kb on - strand, within BBR_RS12385 at 528.472 kb on - strand, within BBR_RS12385 at 528.472 kb on - strand, within BBR_RS12385 at 528.472 kb on - strand, within BBR_RS12385 at 528.472 kb on - strand, within BBR_RS12385 at 528.477 kb on - strand, within BBR_RS12385 at 528.484 kb on - strand, within BBR_RS12385 at 528.488 kb on + strand, within BBR_RS12385 at 528.496 kb on + strand, within BBR_RS12385 at 528.496 kb on + strand, within BBR_RS12385 at 528.496 kb on + strand, within BBR_RS12385 at 528.496 kb on + strand, within BBR_RS12385 at 528.500 kb on + strand, within BBR_RS12385 at 528.504 kb on - strand, within BBR_RS12385 at 528.504 kb on - strand, within BBR_RS12385 at 528.504 kb on - strand, within BBR_RS12385 at 528.504 kb on - strand, within BBR_RS12385 at 528.504 kb on - strand, within BBR_RS12385 at 528.504 kb on - strand, within BBR_RS12385 at 528.511 kb on + strand, within BBR_RS12385 at 528.511 kb on + strand, within BBR_RS12385 at 528.514 kb on - strand, within BBR_RS12385 at 528.517 kb on - strand, within BBR_RS12385 at 528.519 kb on - strand, within BBR_RS12385 at 528.542 kb on - strand, within BBR_RS12385 at 528.542 kb on - strand, within BBR_RS12385 at 528.544 kb on + strand, within BBR_RS12385 at 528.578 kb on + strand, within BBR_RS12385 at 528.585 kb on - strand, within BBR_RS12385 at 528.586 kb on - strand, within BBR_RS12385 at 528.626 kb on - strand, within BBR_RS12385 at 528.626 kb on - strand, within BBR_RS12385 at 528.628 kb on - strand, within BBR_RS12385 at 528.633 kb on - strand, within BBR_RS12385 at 528.641 kb on + strand, within BBR_RS12385 at 528.654 kb on - strand, within BBR_RS12385 at 528.660 kb on - strand, within BBR_RS12385 at 528.667 kb on - strand, within BBR_RS12385 at 528.700 kb on - strand, within BBR_RS12385 at 528.718 kb on + strand, within BBR_RS12385 at 528.720 kb on - strand, within BBR_RS12385 at 528.720 kb on - strand, within BBR_RS12385 at 528.749 kb on + strand, within BBR_RS12385 at 528.749 kb on + strand, within BBR_RS12385 at 528.757 kb on - strand, within BBR_RS12385 at 528.776 kb on - strand, within BBR_RS12385 at 528.780 kb on + strand, within BBR_RS12385 at 528.780 kb on + strand, within BBR_RS12385 at 528.788 kb on + strand, within BBR_RS12385 at 528.788 kb on - strand, within BBR_RS12385 at 528.801 kb on + strand, within BBR_RS12385 at 528.819 kb on - strand, within BBR_RS12385 at 528.823 kb on + strand, within BBR_RS12385 at 528.890 kb on + strand at 528.898 kb on - strand at 528.915 kb on + strand at 528.915 kb on + strand at 528.922 kb on - strand at 528.922 kb on - strand at 528.923 kb on - strand at 528.936 kb on + strand at 528.944 kb on + strand at 528.944 kb on + strand at 528.944 kb on + strand at 528.944 kb on + strand at 528.944 kb on + strand at 528.957 kb on - strand at 528.984 kb on + strand at 528.992 kb on - strand at 529.017 kb on + strand at 529.017 kb on + strand at 529.025 kb on - strand at 529.027 kb on + strand at 529.027 kb on + strand at 529.027 kb on + strand at 529.040 kb on + strand at 529.048 kb on - strand at 529.065 kb on - strand at 529.162 kb on + strand at 529.168 kb on - strand at 529.170 kb on + strand at 529.182 kb on + strand at 529.183 kb on + strand at 529.194 kb on + strand at 529.209 kb on - strand at 529.238 kb on + strand at 529.240 kb on + strand at 529.240 kb on + strand at 529.246 kb on - strand at 529.271 kb on - strand at 529.282 kb on - strand, within BBR_RS12390 at 529.289 kb on - strand, within BBR_RS12390 at 529.313 kb on - strand, within BBR_RS12390 at 529.314 kb on + strand, within BBR_RS12390 at 529.314 kb on + strand, within BBR_RS12390 at 529.319 kb on - strand, within BBR_RS12390 at 529.323 kb on + strand, within BBR_RS12390 at 529.328 kb on + strand, within BBR_RS12390 at 529.331 kb on - strand, within BBR_RS12390 at 529.331 kb on - strand, within BBR_RS12390 at 529.331 kb on - strand, within BBR_RS12390 at 529.347 kb on - strand, within BBR_RS12390 at 529.352 kb on - strand, within BBR_RS12390 at 529.352 kb on - strand, within BBR_RS12390 at 529.370 kb on + strand, within BBR_RS12390 at 529.378 kb on - strand, within BBR_RS12390 at 529.396 kb on + strand, within BBR_RS12390 at 529.396 kb on - strand, within BBR_RS12390 at 529.417 kb on + strand, within BBR_RS12390 at 529.425 kb on + strand, within BBR_RS12390 at 529.450 kb on + strand, within BBR_RS12390 at 529.499 kb on - strand, within BBR_RS12390 at 529.526 kb on - strand, within BBR_RS12390 at 529.559 kb on + strand, within BBR_RS12390 at 529.571 kb on + strand, within BBR_RS12390 at 529.571 kb on + strand, within BBR_RS12390 at 529.573 kb on + strand, within BBR_RS12390 at 529.574 kb on - strand, within BBR_RS12390 at 529.579 kb on - strand, within BBR_RS12390 at 529.579 kb on - strand, within BBR_RS12390 at 529.579 kb on - strand, within BBR_RS12390 at 529.579 kb on - strand, within BBR_RS12390 at 529.688 kb on + strand at 529.688 kb on - strand at 529.690 kb on + strand at 529.696 kb on - strand at 529.741 kb on + strand, within BBR_RS12395 at 529.741 kb on + strand, within BBR_RS12395 at 529.741 kb on + strand, within BBR_RS12395 at 529.749 kb on - strand, within BBR_RS12395 at 529.749 kb on - strand, within BBR_RS12395 at 529.754 kb on - strand, within BBR_RS12395 at 529.781 kb on + strand, within BBR_RS12395 at 529.806 kb on + strand, within BBR_RS12395 at 529.814 kb on + strand, within BBR_RS12395 at 529.814 kb on + strand, within BBR_RS12395 at 529.814 kb on - strand, within BBR_RS12395 at 529.820 kb on + strand, within BBR_RS12395 at 529.820 kb on + strand, within BBR_RS12395 at 529.823 kb on - strand, within BBR_RS12395 at 529.848 kb on - strand, within BBR_RS12395 at 529.848 kb on - strand, within BBR_RS12395 at 529.867 kb on + strand, within BBR_RS12395 at 529.899 kb on + strand, within BBR_RS12395 at 529.942 kb on - strand, within BBR_RS12395 at 529.970 kb on + strand, within BBR_RS12395
Per-strain Table
Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 remove 527,083 - BBR_RS12375 0.40 +1.3 527,125 - BBR_RS12375 0.48 +0.1 527,212 - BBR_RS12375 0.65 +5.4 527,388 + +2.4 527,388 - +2.6 527,420 - -0.3 527,420 - +1.2 527,420 - +2.1 527,422 + +3.1 527,422 + -1.1 527,422 + +2.8 527,430 - -1.4 527,506 + -0.7 527,514 + +1.7 527,540 + BBR_RS12380 0.18 -0.4 527,558 - BBR_RS12380 0.24 +2.7 527,561 + BBR_RS12380 0.25 +2.1 527,574 - BBR_RS12380 0.30 +1.4 527,629 - BBR_RS12380 0.49 +0.8 527,636 + BBR_RS12380 0.52 -0.8 527,666 + BBR_RS12380 0.62 +3.2 527,671 + BBR_RS12380 0.64 -1.1 527,685 + BBR_RS12380 0.69 +1.5 527,698 - BBR_RS12380 0.74 +3.3 527,704 + BBR_RS12380 0.76 +0.1 527,704 + BBR_RS12380 0.76 +0.6 527,704 + BBR_RS12380 0.76 -0.1 527,712 + BBR_RS12380 0.79 -0.2 527,712 - BBR_RS12380 0.79 +5.8 527,734 - BBR_RS12380 0.87 +2.6 527,835 - +0.8 527,886 - -0.5 527,897 + -0.4 527,913 + +1.8 527,915 + +2.2 527,916 - -0.6 528,000 - -1.0 528,022 - +0.5 528,039 - -2.0 528,067 + -1.4 528,082 + BBR_RS12385 0.11 -0.4 528,082 + BBR_RS12385 0.11 +1.2 528,090 - BBR_RS12385 0.12 -2.3 528,090 - BBR_RS12385 0.12 -1.6 528,104 - BBR_RS12385 0.14 -1.4 528,107 - BBR_RS12385 0.14 -2.1 528,114 - BBR_RS12385 0.15 -1.5 528,139 - BBR_RS12385 0.17 -0.9 528,140 - BBR_RS12385 0.17 -0.5 528,142 + BBR_RS12385 0.17 -0.1 528,150 - BBR_RS12385 0.18 -0.9 528,173 - BBR_RS12385 0.20 -0.9 528,180 - BBR_RS12385 0.21 +2.2 528,180 - BBR_RS12385 0.21 +0.3 528,252 + BBR_RS12385 0.28 -1.5 528,280 + BBR_RS12385 0.31 -0.0 528,310 + BBR_RS12385 0.34 -0.3 528,320 + BBR_RS12385 0.35 +0.8 528,328 - BBR_RS12385 0.36 -1.5 528,328 - BBR_RS12385 0.36 +0.5 528,331 + BBR_RS12385 0.36 +0.3 528,343 - BBR_RS12385 0.37 -1.7 528,348 + BBR_RS12385 0.38 -1.6 528,363 + BBR_RS12385 0.39 +2.7 528,372 + BBR_RS12385 0.40 -0.2 528,381 + BBR_RS12385 0.41 -0.0 528,386 + BBR_RS12385 0.41 -1.4 528,386 + BBR_RS12385 0.41 -1.0 528,394 - BBR_RS12385 0.42 +1.0 528,427 - BBR_RS12385 0.45 +1.0 528,430 + BBR_RS12385 0.46 -3.2 528,441 + BBR_RS12385 0.47 +0.2 528,464 + BBR_RS12385 0.49 +0.7 528,464 + BBR_RS12385 0.49 -1.3 528,464 + BBR_RS12385 0.49 -0.4 528,464 + BBR_RS12385 0.49 +0.2 528,472 - BBR_RS12385 0.50 +0.1 528,472 - BBR_RS12385 0.50 +0.7 528,472 - BBR_RS12385 0.50 +2.5 528,472 - BBR_RS12385 0.50 +1.5 528,472 - BBR_RS12385 0.50 -2.3 528,477 - BBR_RS12385 0.50 -1.2 528,484 - BBR_RS12385 0.51 -0.6 528,488 + BBR_RS12385 0.52 -0.6 528,496 + BBR_RS12385 0.52 -1.1 528,496 + BBR_RS12385 0.52 -1.6 528,496 + BBR_RS12385 0.52 -2.6 528,496 + BBR_RS12385 0.52 -0.3 528,500 + BBR_RS12385 0.53 +0.6 528,504 - BBR_RS12385 0.53 -1.3 528,504 - BBR_RS12385 0.53 -0.4 528,504 - BBR_RS12385 0.53 +3.0 528,504 - BBR_RS12385 0.53 +1.1 528,504 - BBR_RS12385 0.53 -0.3 528,504 - BBR_RS12385 0.53 +0.0 528,511 + BBR_RS12385 0.54 -0.5 528,511 + BBR_RS12385 0.54 +0.6 528,514 - BBR_RS12385 0.54 -1.9 528,517 - BBR_RS12385 0.54 -0.6 528,519 - BBR_RS12385 0.55 +0.7 528,542 - BBR_RS12385 0.57 -0.5 528,542 - BBR_RS12385 0.57 -0.4 528,544 + BBR_RS12385 0.57 -0.3 528,578 + BBR_RS12385 0.60 -2.2 528,585 - BBR_RS12385 0.61 -1.9 528,586 - BBR_RS12385 0.61 +1.3 528,626 - BBR_RS12385 0.65 +0.8 528,626 - BBR_RS12385 0.65 -2.6 528,628 - BBR_RS12385 0.65 -0.3 528,633 - BBR_RS12385 0.66 +0.0 528,641 + BBR_RS12385 0.67 -0.4 528,654 - BBR_RS12385 0.68 -0.5 528,660 - BBR_RS12385 0.69 -0.6 528,667 - BBR_RS12385 0.69 -0.8 528,700 - BBR_RS12385 0.73 -1.5 528,718 + BBR_RS12385 0.74 +1.2 528,720 - BBR_RS12385 0.74 +1.8 528,720 - BBR_RS12385 0.74 -1.7 528,749 + BBR_RS12385 0.77 +0.6 528,749 + BBR_RS12385 0.77 -0.7 528,757 - BBR_RS12385 0.78 -0.7 528,776 - BBR_RS12385 0.80 -1.1 528,780 + BBR_RS12385 0.80 +1.0 528,780 + BBR_RS12385 0.80 +0.0 528,788 + BBR_RS12385 0.81 -0.0 528,788 - BBR_RS12385 0.81 +1.9 528,801 + BBR_RS12385 0.82 +0.3 528,819 - BBR_RS12385 0.84 -0.7 528,823 + BBR_RS12385 0.85 -1.3 528,890 + +3.9 528,898 - -1.1 528,915 + +1.5 528,915 + -1.6 528,922 - -0.6 528,922 - +0.7 528,923 - -0.9 528,936 + +0.7 528,944 + -0.1 528,944 + -0.6 528,944 + -0.5 528,944 + -1.2 528,944 + +0.0 528,957 - -0.3 528,984 + -0.8 528,992 - +0.6 529,017 + -0.7 529,017 + -0.6 529,025 - -0.3 529,027 + -1.3 529,027 + -1.7 529,027 + -0.7 529,040 + -1.4 529,048 - -0.1 529,065 - -0.8 529,162 + -1.4 529,168 - -0.4 529,170 + -1.2 529,182 + -0.8 529,183 + -1.7 529,194 + -1.7 529,209 - +2.6 529,238 + -1.3 529,240 + +0.8 529,240 + +1.2 529,246 - -0.5 529,271 - +1.2 529,282 - BBR_RS12390 0.11 +1.5 529,289 - BBR_RS12390 0.12 -0.3 529,313 - BBR_RS12390 0.18 +2.3 529,314 + BBR_RS12390 0.18 -2.1 529,314 + BBR_RS12390 0.18 -0.7 529,319 - BBR_RS12390 0.19 +0.6 529,323 + BBR_RS12390 0.20 -1.2 529,328 + BBR_RS12390 0.21 +0.4 529,331 - BBR_RS12390 0.22 -1.9 529,331 - BBR_RS12390 0.22 +0.2 529,331 - BBR_RS12390 0.22 -1.4 529,347 - BBR_RS12390 0.26 -1.6 529,352 - BBR_RS12390 0.27 -1.2 529,352 - BBR_RS12390 0.27 -1.5 529,370 + BBR_RS12390 0.31 -2.8 529,378 - BBR_RS12390 0.33 +1.4 529,396 + BBR_RS12390 0.37 +1.9 529,396 - BBR_RS12390 0.37 -0.8 529,417 + BBR_RS12390 0.42 -1.7 529,425 + BBR_RS12390 0.44 +1.0 529,450 + BBR_RS12390 0.50 -1.1 529,499 - BBR_RS12390 0.61 -0.4 529,526 - BBR_RS12390 0.68 +3.2 529,559 + BBR_RS12390 0.75 -0.2 529,571 + BBR_RS12390 0.78 -1.1 529,571 + BBR_RS12390 0.78 -1.1 529,573 + BBR_RS12390 0.79 -0.6 529,574 - BBR_RS12390 0.79 -0.5 529,579 - BBR_RS12390 0.80 -1.1 529,579 - BBR_RS12390 0.80 +1.2 529,579 - BBR_RS12390 0.80 -0.7 529,579 - BBR_RS12390 0.80 +0.6 529,688 + -0.8 529,688 - +0.9 529,690 + +2.9 529,696 - +1.2 529,741 + BBR_RS12395 0.11 +2.3 529,741 + BBR_RS12395 0.11 +0.7 529,741 + BBR_RS12395 0.11 -1.5 529,749 - BBR_RS12395 0.12 -0.3 529,749 - BBR_RS12395 0.12 -1.3 529,754 - BBR_RS12395 0.13 +0.7 529,781 + BBR_RS12395 0.17 +0.2 529,806 + BBR_RS12395 0.21 +0.3 529,814 + BBR_RS12395 0.23 -1.9 529,814 + BBR_RS12395 0.23 +0.0 529,814 - BBR_RS12395 0.23 +0.4 529,820 + BBR_RS12395 0.24 +0.0 529,820 + BBR_RS12395 0.24 -0.8 529,823 - BBR_RS12395 0.24 +0.2 529,848 - BBR_RS12395 0.28 -0.1 529,848 - BBR_RS12395 0.28 -0.3 529,867 + BBR_RS12395 0.31 -0.1 529,899 + BBR_RS12395 0.36 +2.6 529,942 - BBR_RS12395 0.43 +0.3 529,970 + BBR_RS12395 0.48 -1.4
Or see this region's nucleotide sequence