Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12245

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12235 and BBR_RS12240 are separated by 129 nucleotidesBBR_RS12240 and BBR_RS20685 overlap by 40 nucleotidesBBR_RS20685 and BBR_RS12245 are separated by 40 nucleotidesBBR_RS12245 and BBR_RS12250 are separated by 436 nucleotides BBR_RS12235: BBR_RS12235 - hypothetical protein, at 494,728 to 495,414 _RS12235 BBR_RS12240: BBR_RS12240 - 30S ribosomal protein S15, at 495,544 to 495,813 _RS12240 BBR_RS20685: BBR_RS20685 - hypothetical protein, at 495,774 to 496,049 _RS20685 BBR_RS12245: BBR_RS12245 - polyribonucleotide nucleotidyltransferase, at 496,090 to 498,801 _RS12245 BBR_RS12250: BBR_RS12250 - ATP-binding protein of ABC transporter system, at 499,238 to 499,948 _RS12250 Position (kb) 496 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 495.834 kb on + strand, within BBR_RS20685at 495.840 kb on + strand, within BBR_RS20685at 495.845 kb on + strand, within BBR_RS20685at 495.845 kb on + strand, within BBR_RS20685at 495.845 kb on + strand, within BBR_RS20685at 495.892 kb on + strand, within BBR_RS20685at 495.893 kb on + strand, within BBR_RS20685at 495.893 kb on + strand, within BBR_RS20685at 495.911 kb on + strand, within BBR_RS20685at 495.927 kb on - strand, within BBR_RS20685at 495.941 kb on - strand, within BBR_RS20685at 495.988 kb on + strand, within BBR_RS20685at 496.029 kb on + strandat 496.031 kb on + strandat 496.416 kb on - strand, within BBR_RS12245at 498.356 kb on + strand, within BBR_RS12245at 498.625 kb on - strandat 498.650 kb on - strandat 498.780 kb on + strandat 498.800 kb on + strandat 498.829 kb on - strandat 498.843 kb on - strandat 498.845 kb on + strandat 498.845 kb on + strandat 498.850 kb on + strandat 498.865 kb on + strandat 498.865 kb on + strandat 498.872 kb on + strandat 498.904 kb on - strandat 498.932 kb on - strandat 498.954 kb on + strandat 498.969 kb on - strandat 498.969 kb on - strandat 498.978 kb on + strandat 498.992 kb on - strandat 499.038 kb on - strandat 499.054 kb on + strandat 499.169 kb on + strandat 499.236 kb on + strandat 499.260 kb on + strandat 499.276 kb on - strandat 499.278 kb on - strandat 499.291 kb on + strandat 499.291 kb on + strandat 499.291 kb on + strandat 499.291 kb on + strandat 499.291 kb on + strandat 499.291 kb on + strandat 499.296 kb on + strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.320 kb on + strand, within BBR_RS12250at 499.320 kb on + strand, within BBR_RS12250at 499.328 kb on - strand, within BBR_RS12250at 499.328 kb on - strand, within BBR_RS12250at 499.337 kb on + strand, within BBR_RS12250at 499.337 kb on + strand, within BBR_RS12250at 499.337 kb on + strand, within BBR_RS12250at 499.362 kb on + strand, within BBR_RS12250at 499.362 kb on + strand, within BBR_RS12250at 499.369 kb on - strand, within BBR_RS12250at 499.374 kb on - strand, within BBR_RS12250at 499.380 kb on + strand, within BBR_RS12250at 499.381 kb on + strand, within BBR_RS12250at 499.420 kb on + strand, within BBR_RS12250at 499.433 kb on - strand, within BBR_RS12250at 499.451 kb on - strand, within BBR_RS12250at 499.457 kb on + strand, within BBR_RS12250at 499.465 kb on - strand, within BBR_RS12250at 499.467 kb on + strand, within BBR_RS12250at 499.475 kb on + strand, within BBR_RS12250at 499.475 kb on - strand, within BBR_RS12250at 499.477 kb on + strand, within BBR_RS12250at 499.483 kb on + strand, within BBR_RS12250at 499.492 kb on + strand, within BBR_RS12250at 499.492 kb on + strand, within BBR_RS12250at 499.492 kb on + strand, within BBR_RS12250at 499.500 kb on - strand, within BBR_RS12250at 499.502 kb on - strand, within BBR_RS12250at 499.559 kb on + strand, within BBR_RS12250at 499.593 kb on + strand, within BBR_RS12250at 499.593 kb on + strand, within BBR_RS12250at 499.593 kb on + strand, within BBR_RS12250at 499.599 kb on - strand, within BBR_RS12250at 499.610 kb on + strand, within BBR_RS12250at 499.627 kb on + strand, within BBR_RS12250at 499.635 kb on - strand, within BBR_RS12250at 499.670 kb on - strand, within BBR_RS12250at 499.670 kb on - strand, within BBR_RS12250at 499.683 kb on + strand, within BBR_RS12250at 499.683 kb on + strand, within BBR_RS12250at 499.683 kb on + strand, within BBR_RS12250at 499.689 kb on + strand, within BBR_RS12250at 499.706 kb on + strand, within BBR_RS12250at 499.714 kb on - strand, within BBR_RS12250at 499.714 kb on - strand, within BBR_RS12250at 499.728 kb on + strand, within BBR_RS12250at 499.740 kb on + strand, within BBR_RS12250at 499.741 kb on - strand, within BBR_RS12250at 499.749 kb on + strand, within BBR_RS12250at 499.751 kb on + strand, within BBR_RS12250at 499.757 kb on - strand, within BBR_RS12250at 499.763 kb on + strand, within BBR_RS12250at 499.763 kb on + strand, within BBR_RS12250at 499.771 kb on - strand, within BBR_RS12250at 499.772 kb on - strand, within BBR_RS12250at 499.782 kb on - strand, within BBR_RS12250at 499.788 kb on + strand, within BBR_RS12250at 499.796 kb on - strand, within BBR_RS12250at 499.798 kb on + strand, within BBR_RS12250

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
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495,834 + BBR_RS20685 0.22 +1.6
495,840 + BBR_RS20685 0.24 -0.3
495,845 + BBR_RS20685 0.26 -1.9
495,845 + BBR_RS20685 0.26 -0.4
495,845 + BBR_RS20685 0.26 -0.6
495,892 + BBR_RS20685 0.43 -0.1
495,893 + BBR_RS20685 0.43 -1.4
495,893 + BBR_RS20685 0.43 -0.3
495,911 + BBR_RS20685 0.50 +0.2
495,927 - BBR_RS20685 0.55 +2.0
495,941 - BBR_RS20685 0.61 +0.2
495,988 + BBR_RS20685 0.78 +2.6
496,029 + +3.0
496,031 + +1.1
496,416 - BBR_RS12245 0.12 -0.1
498,356 + BBR_RS12245 0.84 -1.1
498,625 - +2.1
498,650 - +4.9
498,780 + -1.6
498,800 + -2.6
498,829 - -0.8
498,843 - +1.6
498,845 + -2.1
498,845 + -1.5
498,850 + -1.1
498,865 + +1.4
498,865 + -0.8
498,872 + +2.4
498,904 - +0.8
498,932 - -0.8
498,954 + -0.2
498,969 - -0.5
498,969 - +1.3
498,978 + -1.1
498,992 - -0.2
499,038 - -0.3
499,054 + +0.0
499,169 + +1.4
499,236 + +2.0
499,260 + +1.7
499,276 - +0.9
499,278 - -1.0
499,291 + -1.4
499,291 + -1.5
499,291 + -0.9
499,291 + +3.6
499,291 + -1.4
499,291 + -0.0
499,296 + -0.9
499,299 - +2.3
499,299 - -1.3
499,299 - +2.6
499,299 - -2.0
499,320 + BBR_RS12250 0.12 +0.9
499,320 + BBR_RS12250 0.12 -0.4
499,328 - BBR_RS12250 0.13 +2.5
499,328 - BBR_RS12250 0.13 +3.6
499,337 + BBR_RS12250 0.14 -1.1
499,337 + BBR_RS12250 0.14 -1.9
499,337 + BBR_RS12250 0.14 +1.7
499,362 + BBR_RS12250 0.17 -2.0
499,362 + BBR_RS12250 0.17 -1.9
499,369 - BBR_RS12250 0.18 +2.5
499,374 - BBR_RS12250 0.19 +1.0
499,380 + BBR_RS12250 0.20 -0.2
499,381 + BBR_RS12250 0.20 +3.7
499,420 + BBR_RS12250 0.26 +1.4
499,433 - BBR_RS12250 0.27 +3.9
499,451 - BBR_RS12250 0.30 -1.0
499,457 + BBR_RS12250 0.31 -1.1
499,465 - BBR_RS12250 0.32 +0.1
499,467 + BBR_RS12250 0.32 +2.4
499,475 + BBR_RS12250 0.33 +0.1
499,475 - BBR_RS12250 0.33 +0.0
499,477 + BBR_RS12250 0.34 -1.5
499,483 + BBR_RS12250 0.34 -0.8
499,492 + BBR_RS12250 0.36 +0.0
499,492 + BBR_RS12250 0.36 +2.3
499,492 + BBR_RS12250 0.36 +2.1
499,500 - BBR_RS12250 0.37 -0.7
499,502 - BBR_RS12250 0.37 +2.3
499,559 + BBR_RS12250 0.45 +0.0
499,593 + BBR_RS12250 0.50 +1.0
499,593 + BBR_RS12250 0.50 +2.7
499,593 + BBR_RS12250 0.50 -1.6
499,599 - BBR_RS12250 0.51 -1.6
499,610 + BBR_RS12250 0.52 -1.4
499,627 + BBR_RS12250 0.55 -0.8
499,635 - BBR_RS12250 0.56 +3.5
499,670 - BBR_RS12250 0.61 -0.7
499,670 - BBR_RS12250 0.61 +1.4
499,683 + BBR_RS12250 0.63 +0.2
499,683 + BBR_RS12250 0.63 +1.6
499,683 + BBR_RS12250 0.63 +0.2
499,689 + BBR_RS12250 0.63 -0.6
499,706 + BBR_RS12250 0.66 -0.9
499,714 - BBR_RS12250 0.67 -0.8
499,714 - BBR_RS12250 0.67 -1.1
499,728 + BBR_RS12250 0.69 -0.4
499,740 + BBR_RS12250 0.71 -1.5
499,741 - BBR_RS12250 0.71 +2.1
499,749 + BBR_RS12250 0.72 +2.3
499,751 + BBR_RS12250 0.72 -0.2
499,757 - BBR_RS12250 0.73 -0.8
499,763 + BBR_RS12250 0.74 +0.9
499,763 + BBR_RS12250 0.74 -0.9
499,771 - BBR_RS12250 0.75 -1.0
499,772 - BBR_RS12250 0.75 +1.9
499,782 - BBR_RS12250 0.77 -2.4
499,788 + BBR_RS12250 0.77 +0.3
499,796 - BBR_RS12250 0.78 +0.7
499,798 + BBR_RS12250 0.79 +2.0

Or see this region's nucleotide sequence