Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11240 and BBR_RS11245 are separated by 322 nucleotides BBR_RS11245 and BBR_RS11250 are separated by 239 nucleotides
BBR_RS11240: BBR_RS11240 - GtrA family protein, at 267,653 to 268,189
_RS11240
BBR_RS11245: BBR_RS11245 - MFS transporter, at 268,512 to 269,963
_RS11245
BBR_RS11250: BBR_RS11250 - histidine phosphatase family protein, at 270,203 to 270,862
_RS11250
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 267.515 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.518 kb on + strand at 267.537 kb on - strand at 267.540 kb on - strand at 267.545 kb on - strand at 267.568 kb on + strand at 267.590 kb on - strand at 267.590 kb on - strand at 267.595 kb on + strand at 267.602 kb on - strand at 267.602 kb on - strand at 267.605 kb on + strand at 268.067 kb on + strand, within BBR_RS11240 at 268.067 kb on + strand, within BBR_RS11240 at 268.095 kb on + strand, within BBR_RS11240 at 268.098 kb on + strand, within BBR_RS11240 at 268.155 kb on + strand at 268.155 kb on + strand at 268.160 kb on + strand at 268.168 kb on + strand at 268.168 kb on + strand at 268.168 kb on + strand at 268.175 kb on - strand at 268.176 kb on - strand at 268.176 kb on - strand at 268.214 kb on + strand at 268.239 kb on + strand at 268.247 kb on - strand at 268.300 kb on + strand at 268.363 kb on + strand at 268.371 kb on - strand at 268.371 kb on - strand at 268.429 kb on + strand at 268.440 kb on + strand at 268.445 kb on - strand at 268.457 kb on - strand at 268.488 kb on + strand at 268.496 kb on - strand at 268.505 kb on - strand at 268.509 kb on + strand at 268.509 kb on + strand at 268.511 kb on - strand at 268.517 kb on - strand at 268.519 kb on - strand at 268.519 kb on - strand at 268.532 kb on + strand at 268.532 kb on + strand at 268.552 kb on + strand at 268.560 kb on - strand at 268.560 kb on - strand at 268.560 kb on - strand at 268.562 kb on + strand at 268.562 kb on + strand at 268.570 kb on - strand at 268.570 kb on - strand at 268.577 kb on - strand at 268.607 kb on - strand at 268.608 kb on + strand at 268.614 kb on - strand at 268.614 kb on - strand at 268.616 kb on + strand at 268.616 kb on + strand at 268.636 kb on + strand at 268.655 kb on + strand at 268.659 kb on + strand, within BBR_RS11245 at 268.665 kb on + strand, within BBR_RS11245 at 268.665 kb on + strand, within BBR_RS11245 at 268.681 kb on - strand, within BBR_RS11245 at 268.682 kb on + strand, within BBR_RS11245 at 268.699 kb on + strand, within BBR_RS11245 at 268.704 kb on + strand, within BBR_RS11245 at 268.712 kb on - strand, within BBR_RS11245 at 268.712 kb on - strand, within BBR_RS11245 at 268.719 kb on - strand, within BBR_RS11245 at 268.723 kb on + strand, within BBR_RS11245 at 268.725 kb on - strand, within BBR_RS11245 at 268.746 kb on + strand, within BBR_RS11245 at 268.750 kb on + strand, within BBR_RS11245 at 268.750 kb on + strand, within BBR_RS11245 at 268.774 kb on - strand, within BBR_RS11245 at 268.783 kb on + strand, within BBR_RS11245 at 268.787 kb on + strand, within BBR_RS11245 at 268.791 kb on - strand, within BBR_RS11245 at 268.812 kb on - strand, within BBR_RS11245 at 268.869 kb on - strand, within BBR_RS11245 at 268.879 kb on - strand, within BBR_RS11245 at 268.884 kb on + strand, within BBR_RS11245 at 268.891 kb on - strand, within BBR_RS11245 at 268.893 kb on + strand, within BBR_RS11245 at 268.893 kb on + strand, within BBR_RS11245 at 268.926 kb on + strand, within BBR_RS11245 at 268.926 kb on + strand, within BBR_RS11245 at 268.929 kb on + strand, within BBR_RS11245 at 268.932 kb on - strand, within BBR_RS11245 at 268.932 kb on - strand, within BBR_RS11245 at 268.932 kb on - strand, within BBR_RS11245 at 268.934 kb on - strand, within BBR_RS11245 at 268.939 kb on - strand, within BBR_RS11245 at 268.944 kb on - strand, within BBR_RS11245 at 268.949 kb on + strand, within BBR_RS11245 at 268.951 kb on + strand, within BBR_RS11245 at 268.971 kb on + strand, within BBR_RS11245 at 268.971 kb on + strand, within BBR_RS11245 at 268.971 kb on + strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.979 kb on - strand, within BBR_RS11245 at 268.981 kb on + strand, within BBR_RS11245 at 268.986 kb on - strand, within BBR_RS11245 at 268.996 kb on - strand, within BBR_RS11245 at 269.022 kb on + strand, within BBR_RS11245 at 269.023 kb on - strand, within BBR_RS11245 at 269.024 kb on + strand, within BBR_RS11245 at 269.032 kb on - strand, within BBR_RS11245 at 269.054 kb on + strand, within BBR_RS11245 at 269.054 kb on + strand, within BBR_RS11245 at 269.056 kb on - strand, within BBR_RS11245 at 269.062 kb on - strand, within BBR_RS11245 at 269.079 kb on + strand, within BBR_RS11245 at 269.097 kb on + strand, within BBR_RS11245 at 269.097 kb on + strand, within BBR_RS11245 at 269.105 kb on + strand, within BBR_RS11245 at 269.163 kb on - strand, within BBR_RS11245 at 269.168 kb on + strand, within BBR_RS11245 at 269.169 kb on + strand, within BBR_RS11245 at 269.177 kb on - strand, within BBR_RS11245 at 269.193 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.278 kb on + strand, within BBR_RS11245 at 269.284 kb on + strand, within BBR_RS11245 at 269.289 kb on + strand, within BBR_RS11245 at 269.289 kb on + strand, within BBR_RS11245 at 269.297 kb on - strand, within BBR_RS11245 at 269.307 kb on - strand, within BBR_RS11245 at 269.307 kb on - strand, within BBR_RS11245 at 269.319 kb on + strand, within BBR_RS11245 at 269.319 kb on + strand, within BBR_RS11245 at 269.325 kb on - strand, within BBR_RS11245 at 269.325 kb on - strand, within BBR_RS11245 at 269.325 kb on - strand, within BBR_RS11245 at 269.332 kb on + strand, within BBR_RS11245 at 269.358 kb on - strand, within BBR_RS11245 at 269.361 kb on - strand, within BBR_RS11245 at 269.369 kb on - strand, within BBR_RS11245 at 269.382 kb on - strand, within BBR_RS11245 at 269.415 kb on - strand, within BBR_RS11245 at 269.432 kb on + strand, within BBR_RS11245 at 269.440 kb on + strand, within BBR_RS11245 at 269.440 kb on - strand, within BBR_RS11245 at 269.440 kb on - strand, within BBR_RS11245 at 269.445 kb on + strand, within BBR_RS11245 at 269.445 kb on + strand, within BBR_RS11245 at 269.448 kb on - strand, within BBR_RS11245 at 269.450 kb on + strand, within BBR_RS11245 at 269.450 kb on + strand, within BBR_RS11245 at 269.453 kb on - strand, within BBR_RS11245 at 269.473 kb on + strand, within BBR_RS11245 at 269.486 kb on + strand, within BBR_RS11245 at 269.487 kb on - strand, within BBR_RS11245 at 269.494 kb on + strand, within BBR_RS11245 at 269.494 kb on + strand, within BBR_RS11245 at 269.494 kb on - strand, within BBR_RS11245 at 269.494 kb on - strand, within BBR_RS11245 at 269.516 kb on - strand, within BBR_RS11245 at 269.523 kb on + strand, within BBR_RS11245 at 269.538 kb on + strand, within BBR_RS11245 at 269.539 kb on - strand, within BBR_RS11245 at 269.561 kb on + strand, within BBR_RS11245 at 269.561 kb on + strand, within BBR_RS11245 at 269.566 kb on + strand, within BBR_RS11245 at 269.571 kb on + strand, within BBR_RS11245 at 269.571 kb on + strand, within BBR_RS11245 at 269.571 kb on + strand, within BBR_RS11245 at 269.571 kb on + strand, within BBR_RS11245 at 269.571 kb on + strand, within BBR_RS11245 at 269.579 kb on - strand, within BBR_RS11245 at 269.579 kb on - strand, within BBR_RS11245 at 269.579 kb on - strand, within BBR_RS11245 at 269.601 kb on - strand, within BBR_RS11245 at 269.605 kb on + strand, within BBR_RS11245 at 269.605 kb on + strand, within BBR_RS11245 at 269.610 kb on + strand, within BBR_RS11245 at 269.613 kb on - strand, within BBR_RS11245 at 269.618 kb on - strand, within BBR_RS11245 at 269.645 kb on - strand, within BBR_RS11245 at 269.645 kb on - strand, within BBR_RS11245 at 269.653 kb on + strand, within BBR_RS11245 at 269.653 kb on + strand, within BBR_RS11245 at 269.701 kb on + strand, within BBR_RS11245 at 269.703 kb on + strand, within BBR_RS11245 at 269.707 kb on + strand, within BBR_RS11245 at 269.732 kb on - strand, within BBR_RS11245 at 269.737 kb on - strand, within BBR_RS11245 at 269.787 kb on + strand, within BBR_RS11245 at 269.806 kb on + strand, within BBR_RS11245 at 269.822 kb on - strand at 269.823 kb on + strand at 269.825 kb on + strand at 269.831 kb on - strand at 269.831 kb on - strand at 269.831 kb on - strand at 269.831 kb on - strand at 269.854 kb on + strand at 269.865 kb on + strand at 269.886 kb on + strand at 269.894 kb on - strand at 269.959 kb on + strand at 269.968 kb on + strand at 269.968 kb on + strand at 269.971 kb on - strand at 269.971 kb on - strand at 269.974 kb on - strand at 269.990 kb on + strand at 269.996 kb on + strand at 270.014 kb on + strand at 270.017 kb on - strand at 270.045 kb on + strand at 270.047 kb on - strand at 270.050 kb on + strand at 270.050 kb on + strand at 270.058 kb on - strand at 270.058 kb on - strand at 270.058 kb on - strand at 270.151 kb on + strand at 270.174 kb on + strand at 270.174 kb on + strand at 270.182 kb on - strand at 270.199 kb on + strand at 270.816 kb on + strand at 270.861 kb on - strand at 270.866 kb on - strand at 270.871 kb on - strand at 270.877 kb on + strand at 270.878 kb on - strand at 270.883 kb on + strand at 270.883 kb on + strand at 270.883 kb on + strand at 270.883 kb on + strand at 270.885 kb on - strand at 270.885 kb on - strand at 270.902 kb on + strand at 270.902 kb on + strand at 270.905 kb on - strand at 270.905 kb on - strand at 270.917 kb on - strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.932 kb on - strand at 270.932 kb on - strand at 270.932 kb on - strand at 270.936 kb on + strand at 270.936 kb on - strand at 270.944 kb on - strand at 270.944 kb on - strand at 270.944 kb on - strand at 270.944 kb on - strand at 270.944 kb on - strand at 270.949 kb on + strand at 270.949 kb on + strand at 270.949 kb on + strand at 270.949 kb on + strand at 270.951 kb on + strand at 270.951 kb on + strand at 270.951 kb on + strand at 270.956 kb on + strand at 270.957 kb on - strand at 270.957 kb on - strand at 270.957 kb on - strand at 270.957 kb on - strand at 270.959 kb on - strand at 270.962 kb on + strand at 270.962 kb on + strand at 270.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 remove 267,515 - -0.8 267,516 - +3.2 267,516 - +0.3 267,516 - -1.8 267,516 - -0.3 267,518 + +2.3 267,537 - +2.6 267,540 - -0.8 267,545 - -0.0 267,568 + -1.3 267,590 - -0.6 267,590 - -2.4 267,595 + +0.9 267,602 - -0.1 267,602 - +4.7 267,605 + -0.9 268,067 + BBR_RS11240 0.77 -1.0 268,067 + BBR_RS11240 0.77 -0.5 268,095 + BBR_RS11240 0.82 -1.3 268,098 + BBR_RS11240 0.83 -1.0 268,155 + +2.3 268,155 + +0.7 268,160 + -2.5 268,168 + -0.1 268,168 + -1.0 268,168 + -1.0 268,175 - +0.6 268,176 - -0.8 268,176 - -0.4 268,214 + +1.2 268,239 + -0.6 268,247 - +1.6 268,300 + +0.9 268,363 + -0.2 268,371 - -0.5 268,371 - +2.1 268,429 + -2.4 268,440 + -1.1 268,445 - +4.3 268,457 - -1.0 268,488 + +0.5 268,496 - +2.1 268,505 - -0.5 268,509 + -1.9 268,509 + -1.1 268,511 - +3.7 268,517 - -1.4 268,519 - -0.7 268,519 - -0.9 268,532 + -1.2 268,532 + -2.6 268,552 + -2.3 268,560 - +1.7 268,560 - -0.2 268,560 - +1.6 268,562 + -1.5 268,562 + -1.4 268,570 - -2.1 268,570 - -1.1 268,577 - -1.2 268,607 - -1.8 268,608 + +1.5 268,614 - -1.1 268,614 - -2.3 268,616 + -0.1 268,616 + +0.7 268,636 + -0.5 268,655 + -1.7 268,659 + BBR_RS11245 0.10 +0.6 268,665 + BBR_RS11245 0.11 -1.0 268,665 + BBR_RS11245 0.11 +0.8 268,681 - BBR_RS11245 0.12 -0.8 268,682 + BBR_RS11245 0.12 -2.8 268,699 + BBR_RS11245 0.13 -1.6 268,704 + BBR_RS11245 0.13 -2.4 268,712 - BBR_RS11245 0.14 -0.9 268,712 - BBR_RS11245 0.14 -2.8 268,719 - BBR_RS11245 0.14 -1.6 268,723 + BBR_RS11245 0.15 -2.0 268,725 - BBR_RS11245 0.15 -1.3 268,746 + BBR_RS11245 0.16 -1.1 268,750 + BBR_RS11245 0.16 -1.5 268,750 + BBR_RS11245 0.16 +1.5 268,774 - BBR_RS11245 0.18 -0.4 268,783 + BBR_RS11245 0.19 +0.7 268,787 + BBR_RS11245 0.19 -0.4 268,791 - BBR_RS11245 0.19 -0.3 268,812 - BBR_RS11245 0.21 +2.0 268,869 - BBR_RS11245 0.25 -0.8 268,879 - BBR_RS11245 0.25 -2.4 268,884 + BBR_RS11245 0.26 +2.7 268,891 - BBR_RS11245 0.26 -0.2 268,893 + BBR_RS11245 0.26 -1.4 268,893 + BBR_RS11245 0.26 -2.1 268,926 + BBR_RS11245 0.29 -1.0 268,926 + BBR_RS11245 0.29 +0.0 268,929 + BBR_RS11245 0.29 -1.8 268,932 - BBR_RS11245 0.29 -1.9 268,932 - BBR_RS11245 0.29 -0.0 268,932 - BBR_RS11245 0.29 -0.1 268,934 - BBR_RS11245 0.29 -2.8 268,939 - BBR_RS11245 0.29 +1.8 268,944 - BBR_RS11245 0.30 -1.6 268,949 + BBR_RS11245 0.30 +2.6 268,951 + BBR_RS11245 0.30 -0.4 268,971 + BBR_RS11245 0.32 -1.5 268,971 + BBR_RS11245 0.32 -1.8 268,971 + BBR_RS11245 0.32 -1.0 268,979 - BBR_RS11245 0.32 -2.6 268,979 - BBR_RS11245 0.32 -1.8 268,979 - BBR_RS11245 0.32 +0.1 268,979 - BBR_RS11245 0.32 -1.2 268,981 + BBR_RS11245 0.32 -0.8 268,986 - BBR_RS11245 0.33 +0.5 268,996 - BBR_RS11245 0.33 -0.9 269,022 + BBR_RS11245 0.35 -1.0 269,023 - BBR_RS11245 0.35 +2.4 269,024 + BBR_RS11245 0.35 -0.5 269,032 - BBR_RS11245 0.36 -2.5 269,054 + BBR_RS11245 0.37 -2.7 269,054 + BBR_RS11245 0.37 -1.2 269,056 - BBR_RS11245 0.37 +0.1 269,062 - BBR_RS11245 0.38 +0.3 269,079 + BBR_RS11245 0.39 -0.0 269,097 + BBR_RS11245 0.40 -0.9 269,097 + BBR_RS11245 0.40 -0.2 269,105 + BBR_RS11245 0.41 -1.7 269,163 - BBR_RS11245 0.45 -0.9 269,168 + BBR_RS11245 0.45 -1.7 269,169 + BBR_RS11245 0.45 -0.8 269,177 - BBR_RS11245 0.46 -1.5 269,193 + BBR_RS11245 0.47 -2.0 269,278 + BBR_RS11245 0.53 -0.7 269,278 + BBR_RS11245 0.53 -0.6 269,278 + BBR_RS11245 0.53 -0.2 269,278 + BBR_RS11245 0.53 -0.6 269,278 + BBR_RS11245 0.53 -1.3 269,278 + BBR_RS11245 0.53 -0.7 269,278 + BBR_RS11245 0.53 -0.7 269,284 + BBR_RS11245 0.53 -2.0 269,289 + BBR_RS11245 0.54 -1.7 269,289 + BBR_RS11245 0.54 +0.4 269,297 - BBR_RS11245 0.54 +0.3 269,307 - BBR_RS11245 0.55 -0.6 269,307 - BBR_RS11245 0.55 +1.3 269,319 + BBR_RS11245 0.56 -1.0 269,319 + BBR_RS11245 0.56 -1.2 269,325 - BBR_RS11245 0.56 -1.7 269,325 - BBR_RS11245 0.56 -2.4 269,325 - BBR_RS11245 0.56 -1.7 269,332 + BBR_RS11245 0.56 -1.2 269,358 - BBR_RS11245 0.58 -2.0 269,361 - BBR_RS11245 0.58 -0.5 269,369 - BBR_RS11245 0.59 -0.4 269,382 - BBR_RS11245 0.60 +0.4 269,415 - BBR_RS11245 0.62 -1.7 269,432 + BBR_RS11245 0.63 -0.9 269,440 + BBR_RS11245 0.64 -0.0 269,440 - BBR_RS11245 0.64 -2.0 269,440 - BBR_RS11245 0.64 -0.5 269,445 + BBR_RS11245 0.64 -1.4 269,445 + BBR_RS11245 0.64 -1.6 269,448 - BBR_RS11245 0.64 -1.2 269,450 + BBR_RS11245 0.65 -2.0 269,450 + BBR_RS11245 0.65 -0.2 269,453 - BBR_RS11245 0.65 -0.6 269,473 + BBR_RS11245 0.66 +2.1 269,486 + BBR_RS11245 0.67 -0.8 269,487 - BBR_RS11245 0.67 -1.8 269,494 + BBR_RS11245 0.68 -0.2 269,494 + BBR_RS11245 0.68 -2.1 269,494 - BBR_RS11245 0.68 -2.8 269,494 - BBR_RS11245 0.68 -0.9 269,516 - BBR_RS11245 0.69 -0.9 269,523 + BBR_RS11245 0.70 -1.5 269,538 + BBR_RS11245 0.71 -0.5 269,539 - BBR_RS11245 0.71 -2.1 269,561 + BBR_RS11245 0.72 -1.8 269,561 + BBR_RS11245 0.72 +0.0 269,566 + BBR_RS11245 0.73 -1.7 269,571 + BBR_RS11245 0.73 +4.8 269,571 + BBR_RS11245 0.73 +1.4 269,571 + BBR_RS11245 0.73 -0.7 269,571 + BBR_RS11245 0.73 -1.1 269,571 + BBR_RS11245 0.73 +2.4 269,579 - BBR_RS11245 0.73 -2.2 269,579 - BBR_RS11245 0.73 -0.8 269,579 - BBR_RS11245 0.73 -2.8 269,601 - BBR_RS11245 0.75 -2.6 269,605 + BBR_RS11245 0.75 -0.2 269,605 + BBR_RS11245 0.75 -1.2 269,610 + BBR_RS11245 0.76 -1.0 269,613 - BBR_RS11245 0.76 +0.3 269,618 - BBR_RS11245 0.76 -1.6 269,645 - BBR_RS11245 0.78 -0.6 269,645 - BBR_RS11245 0.78 -0.6 269,653 + BBR_RS11245 0.79 -0.2 269,653 + BBR_RS11245 0.79 -0.4 269,701 + BBR_RS11245 0.82 +0.2 269,703 + BBR_RS11245 0.82 -1.8 269,707 + BBR_RS11245 0.82 -0.2 269,732 - BBR_RS11245 0.84 +2.6 269,737 - BBR_RS11245 0.84 +0.3 269,787 + BBR_RS11245 0.88 -1.5 269,806 + BBR_RS11245 0.89 +1.2 269,822 - -1.9 269,823 + +0.1 269,825 + -0.1 269,831 - -1.5 269,831 - -1.2 269,831 - -0.3 269,831 - -1.2 269,854 + -2.1 269,865 + +3.3 269,886 + -0.8 269,894 - -1.2 269,959 + -1.1 269,968 + -1.2 269,968 + -1.1 269,971 - -1.0 269,971 - -0.8 269,974 - +2.0 269,990 + +3.4 269,996 + +0.4 270,014 + -1.1 270,017 - +3.2 270,045 + -0.0 270,047 - -0.6 270,050 + -1.2 270,050 + -1.7 270,058 - -1.0 270,058 - -0.0 270,058 - -1.1 270,151 + -0.4 270,174 + -0.4 270,174 + -1.0 270,182 - +3.0 270,199 + +1.1 270,816 + -0.7 270,861 - -1.2 270,866 - -2.7 270,871 - +1.0 270,877 + +2.3 270,878 - -1.0 270,883 + -1.6 270,883 + +0.5 270,883 + -2.1 270,883 + -0.6 270,885 - +4.0 270,885 - +0.0 270,902 + +0.5 270,902 + +0.8 270,905 - +0.8 270,905 - +3.7 270,917 - +3.6 270,924 + +0.3 270,924 + +0.7 270,924 + -0.9 270,924 + -0.4 270,932 - -1.7 270,932 - -1.2 270,932 - -0.2 270,936 + +0.5 270,936 - -0.8 270,944 - +1.0 270,944 - -2.9 270,944 - +0.3 270,944 - +4.7 270,944 - +2.0 270,949 + +1.5 270,949 + -0.8 270,949 + -0.8 270,949 + +2.2 270,951 + -1.7 270,951 + -1.2 270,951 + -0.6 270,956 + -1.5 270,957 - +2.0 270,957 - -1.0 270,957 - -2.5 270,957 - +2.5 270,959 - -1.8 270,962 + -2.4 270,962 + -1.2 270,962 + -0.7
Or see this region's nucleotide sequence