Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10900 and BBR_RS10905 overlap by 1 nucleotides BBR_RS10905 and BBR_RS10910 are separated by 178 nucleotides
BBR_RS10900: BBR_RS10900 - molecular chaperone DnaK, at 188,855 to 190,735
_RS10900
BBR_RS10905: BBR_RS10905 - nucleotide exchange factor GrpE, at 190,735 to 191,418
_RS10905
BBR_RS10910: BBR_RS10910 - molecular chaperone DnaJ, at 191,597 to 192,610
_RS10910
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 190.516 kb on + strand, within BBR_RS10900 at 190.516 kb on + strand, within BBR_RS10900 at 190.516 kb on + strand, within BBR_RS10900 at 190.522 kb on + strand, within BBR_RS10900 at 190.530 kb on + strand, within BBR_RS10900 at 190.540 kb on + strand, within BBR_RS10900 at 190.540 kb on + strand, within BBR_RS10900 at 190.549 kb on + strand at 190.555 kb on + strand at 190.555 kb on + strand at 190.569 kb on + strand at 190.599 kb on + strand at 190.599 kb on + strand at 190.611 kb on + strand at 190.611 kb on + strand at 190.815 kb on + strand, within BBR_RS10905 at 190.815 kb on + strand, within BBR_RS10905 at 190.845 kb on + strand, within BBR_RS10905 at 190.845 kb on + strand, within BBR_RS10905 at 190.845 kb on + strand, within BBR_RS10905 at 190.860 kb on + strand, within BBR_RS10905 at 190.860 kb on + strand, within BBR_RS10905 at 190.998 kb on + strand, within BBR_RS10905 at 191.022 kb on + strand, within BBR_RS10905 at 191.022 kb on + strand, within BBR_RS10905 at 191.022 kb on + strand, within BBR_RS10905 at 191.022 kb on + strand, within BBR_RS10905 at 191.108 kb on + strand, within BBR_RS10905 at 191.305 kb on + strand, within BBR_RS10905 at 191.390 kb on + strand at 191.395 kb on + strand at 191.422 kb on + strand at 191.425 kb on - strand at 191.425 kb on - strand at 191.433 kb on + strand at 191.472 kb on - strand at 191.478 kb on + strand at 191.478 kb on + strand at 191.484 kb on + strand at 191.488 kb on + strand at 191.488 kb on + strand at 191.488 kb on + strand at 191.488 kb on + strand at 191.488 kb on + strand at 191.496 kb on - strand at 191.496 kb on - strand at 191.496 kb on - strand at 191.499 kb on + strand at 191.499 kb on + strand at 191.507 kb on - strand at 191.519 kb on - strand at 191.527 kb on + strand at 191.535 kb on - strand at 191.543 kb on - strand at 191.545 kb on + strand at 191.545 kb on + strand at 191.545 kb on + strand at 191.545 kb on + strand at 191.545 kb on + strand at 191.553 kb on - strand at 191.553 kb on - strand at 191.567 kb on + strand at 191.587 kb on + strand at 191.603 kb on + strand at 191.608 kb on - strand at 191.619 kb on + strand at 191.626 kb on + strand at 191.626 kb on + strand at 191.636 kb on + strand at 191.647 kb on + strand at 191.647 kb on + strand at 191.647 kb on + strand at 191.655 kb on - strand at 191.655 kb on - strand at 191.664 kb on - strand at 191.701 kb on + strand, within BBR_RS10910 at 191.704 kb on + strand, within BBR_RS10910 at 191.704 kb on + strand, within BBR_RS10910 at 191.704 kb on + strand, within BBR_RS10910 at 191.704 kb on + strand, within BBR_RS10910 at 191.704 kb on + strand, within BBR_RS10910 at 191.704 kb on + strand, within BBR_RS10910 at 191.709 kb on + strand, within BBR_RS10910 at 191.709 kb on + strand, within BBR_RS10910 at 191.709 kb on + strand, within BBR_RS10910 at 191.710 kb on + strand, within BBR_RS10910 at 191.712 kb on - strand, within BBR_RS10910 at 191.719 kb on + strand, within BBR_RS10910 at 191.746 kb on + strand, within BBR_RS10910 at 191.757 kb on + strand, within BBR_RS10910 at 191.765 kb on + strand, within BBR_RS10910 at 191.777 kb on - strand, within BBR_RS10910 at 191.782 kb on - strand, within BBR_RS10910 at 191.784 kb on + strand, within BBR_RS10910 at 191.825 kb on + strand, within BBR_RS10910 at 191.829 kb on - strand, within BBR_RS10910 at 191.861 kb on + strand, within BBR_RS10910 at 191.877 kb on + strand, within BBR_RS10910 at 191.886 kb on + strand, within BBR_RS10910 at 191.896 kb on + strand, within BBR_RS10910 at 191.925 kb on - strand, within BBR_RS10910 at 191.970 kb on + strand, within BBR_RS10910 at 191.970 kb on + strand, within BBR_RS10910 at 191.971 kb on + strand, within BBR_RS10910 at 191.998 kb on + strand, within BBR_RS10910 at 192.014 kb on + strand, within BBR_RS10910 at 192.016 kb on + strand, within BBR_RS10910 at 192.043 kb on + strand, within BBR_RS10910 at 192.044 kb on + strand, within BBR_RS10910 at 192.049 kb on + strand, within BBR_RS10910 at 192.049 kb on + strand, within BBR_RS10910 at 192.049 kb on + strand, within BBR_RS10910 at 192.049 kb on + strand, within BBR_RS10910 at 192.057 kb on - strand, within BBR_RS10910 at 192.069 kb on + strand, within BBR_RS10910 at 192.080 kb on + strand, within BBR_RS10910 at 192.104 kb on + strand, within BBR_RS10910 at 192.106 kb on + strand, within BBR_RS10910 at 192.123 kb on + strand, within BBR_RS10910 at 192.133 kb on + strand, within BBR_RS10910 at 192.142 kb on + strand, within BBR_RS10910 at 192.142 kb on + strand, within BBR_RS10910 at 192.142 kb on + strand, within BBR_RS10910 at 192.148 kb on + strand, within BBR_RS10910 at 192.160 kb on + strand, within BBR_RS10910 at 192.184 kb on + strand, within BBR_RS10910 at 192.184 kb on + strand, within BBR_RS10910 at 192.192 kb on - strand, within BBR_RS10910 at 192.192 kb on - strand, within BBR_RS10910 at 192.192 kb on - strand, within BBR_RS10910 at 192.192 kb on - strand, within BBR_RS10910 at 192.226 kb on + strand, within BBR_RS10910 at 192.226 kb on + strand, within BBR_RS10910 at 192.244 kb on + strand, within BBR_RS10910 at 192.252 kb on - strand, within BBR_RS10910 at 192.330 kb on + strand, within BBR_RS10910 at 192.341 kb on + strand, within BBR_RS10910 at 192.341 kb on + strand, within BBR_RS10910 at 192.341 kb on + strand, within BBR_RS10910 at 192.341 kb on + strand, within BBR_RS10910 at 192.355 kb on + strand, within BBR_RS10910 at 192.360 kb on + strand, within BBR_RS10910 at 192.360 kb on + strand, within BBR_RS10910 at 192.360 kb on + strand, within BBR_RS10910 at 192.360 kb on + strand, within BBR_RS10910 at 192.364 kb on + strand, within BBR_RS10910 at 192.365 kb on + strand, within BBR_RS10910 at 192.368 kb on - strand, within BBR_RS10910 at 192.368 kb on - strand, within BBR_RS10910 at 192.368 kb on - strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.388 kb on + strand, within BBR_RS10910 at 192.400 kb on + strand, within BBR_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3 remove 190,516 + BBR_RS10900 0.88 +2.5 190,516 + BBR_RS10900 0.88 +3.3 190,516 + BBR_RS10900 0.88 +0.1 190,522 + BBR_RS10900 0.89 +1.9 190,530 + BBR_RS10900 0.89 +1.8 190,540 + BBR_RS10900 0.90 +3.9 190,540 + BBR_RS10900 0.90 +1.9 190,549 + +3.2 190,555 + +0.6 190,555 + +1.2 190,569 + +0.3 190,599 + +3.2 190,599 + +2.7 190,611 + +2.2 190,611 + +0.9 190,815 + BBR_RS10905 0.12 -0.4 190,815 + BBR_RS10905 0.12 -1.8 190,845 + BBR_RS10905 0.16 -0.3 190,845 + BBR_RS10905 0.16 +0.4 190,845 + BBR_RS10905 0.16 -0.5 190,860 + BBR_RS10905 0.18 -0.0 190,860 + BBR_RS10905 0.18 -0.8 190,998 + BBR_RS10905 0.38 +1.0 191,022 + BBR_RS10905 0.42 -1.0 191,022 + BBR_RS10905 0.42 -1.2 191,022 + BBR_RS10905 0.42 -1.9 191,022 + BBR_RS10905 0.42 +1.2 191,108 + BBR_RS10905 0.55 +1.9 191,305 + BBR_RS10905 0.83 -1.8 191,390 + -0.4 191,395 + +4.5 191,422 + +3.2 191,425 - -0.6 191,425 - +0.3 191,433 + +0.6 191,472 - -0.7 191,478 + -1.3 191,478 + -1.5 191,484 + +0.4 191,488 + +0.9 191,488 + -0.2 191,488 + +4.5 191,488 + -2.0 191,488 + +1.3 191,496 - +1.3 191,496 - -2.6 191,496 - -0.2 191,499 + -1.3 191,499 + -0.1 191,507 - +0.6 191,519 - +1.1 191,527 + +2.6 191,535 - -0.1 191,543 - +1.0 191,545 + +0.0 191,545 + -0.4 191,545 + -0.9 191,545 + -1.2 191,545 + -1.8 191,553 - +2.0 191,553 - +3.3 191,567 + +1.7 191,587 + +3.0 191,603 + +1.2 191,608 - +1.3 191,619 + +3.5 191,626 + +2.9 191,626 + +1.4 191,636 + +0.6 191,647 + -2.2 191,647 + -1.6 191,647 + +3.4 191,655 - +3.9 191,655 - +2.9 191,664 - +0.9 191,701 + BBR_RS10910 0.10 -1.4 191,704 + BBR_RS10910 0.11 -1.3 191,704 + BBR_RS10910 0.11 +2.2 191,704 + BBR_RS10910 0.11 +0.9 191,704 + BBR_RS10910 0.11 -1.1 191,704 + BBR_RS10910 0.11 +2.9 191,704 + BBR_RS10910 0.11 -3.3 191,709 + BBR_RS10910 0.11 +1.0 191,709 + BBR_RS10910 0.11 +1.3 191,709 + BBR_RS10910 0.11 -1.2 191,710 + BBR_RS10910 0.11 +2.5 191,712 - BBR_RS10910 0.11 +2.0 191,719 + BBR_RS10910 0.12 +1.6 191,746 + BBR_RS10910 0.15 -1.2 191,757 + BBR_RS10910 0.16 -1.4 191,765 + BBR_RS10910 0.17 -2.2 191,777 - BBR_RS10910 0.18 +2.3 191,782 - BBR_RS10910 0.18 +4.5 191,784 + BBR_RS10910 0.18 +3.9 191,825 + BBR_RS10910 0.22 +3.5 191,829 - BBR_RS10910 0.23 +1.7 191,861 + BBR_RS10910 0.26 -3.1 191,877 + BBR_RS10910 0.28 +0.6 191,886 + BBR_RS10910 0.29 -0.5 191,896 + BBR_RS10910 0.29 +2.0 191,925 - BBR_RS10910 0.32 +5.5 191,970 + BBR_RS10910 0.37 +1.7 191,970 + BBR_RS10910 0.37 +0.6 191,971 + BBR_RS10910 0.37 -1.6 191,998 + BBR_RS10910 0.40 +1.0 192,014 + BBR_RS10910 0.41 -1.1 192,016 + BBR_RS10910 0.41 -1.0 192,043 + BBR_RS10910 0.44 -0.4 192,044 + BBR_RS10910 0.44 +0.8 192,049 + BBR_RS10910 0.45 +2.7 192,049 + BBR_RS10910 0.45 +1.4 192,049 + BBR_RS10910 0.45 +1.1 192,049 + BBR_RS10910 0.45 -0.6 192,057 - BBR_RS10910 0.45 +2.7 192,069 + BBR_RS10910 0.47 +1.2 192,080 + BBR_RS10910 0.48 -1.4 192,104 + BBR_RS10910 0.50 -0.6 192,106 + BBR_RS10910 0.50 -0.1 192,123 + BBR_RS10910 0.52 +0.1 192,133 + BBR_RS10910 0.53 +3.2 192,142 + BBR_RS10910 0.54 +4.0 192,142 + BBR_RS10910 0.54 -1.7 192,142 + BBR_RS10910 0.54 +2.9 192,148 + BBR_RS10910 0.54 +0.4 192,160 + BBR_RS10910 0.56 +4.5 192,184 + BBR_RS10910 0.58 +1.3 192,184 + BBR_RS10910 0.58 +0.7 192,192 - BBR_RS10910 0.59 +1.4 192,192 - BBR_RS10910 0.59 +1.1 192,192 - BBR_RS10910 0.59 +0.4 192,192 - BBR_RS10910 0.59 +2.2 192,226 + BBR_RS10910 0.62 -1.8 192,226 + BBR_RS10910 0.62 -1.3 192,244 + BBR_RS10910 0.64 +1.9 192,252 - BBR_RS10910 0.65 +3.9 192,330 + BBR_RS10910 0.72 +2.1 192,341 + BBR_RS10910 0.73 +3.6 192,341 + BBR_RS10910 0.73 +3.0 192,341 + BBR_RS10910 0.73 +1.7 192,341 + BBR_RS10910 0.73 -1.5 192,355 + BBR_RS10910 0.75 +1.9 192,360 + BBR_RS10910 0.75 -1.4 192,360 + BBR_RS10910 0.75 -1.3 192,360 + BBR_RS10910 0.75 -0.9 192,360 + BBR_RS10910 0.75 -0.7 192,364 + BBR_RS10910 0.76 +1.3 192,365 + BBR_RS10910 0.76 -0.7 192,368 - BBR_RS10910 0.76 +0.0 192,368 - BBR_RS10910 0.76 +1.2 192,368 - BBR_RS10910 0.76 +0.9 192,388 + BBR_RS10910 0.78 -0.3 192,388 + BBR_RS10910 0.78 -1.3 192,388 + BBR_RS10910 0.78 +3.7 192,388 + BBR_RS10910 0.78 +0.8 192,388 + BBR_RS10910 0.78 -1.2 192,388 + BBR_RS10910 0.78 +0.4 192,388 + BBR_RS10910 0.78 +0.1 192,400 + BBR_RS10910 0.79 -1.0
Or see this region's nucleotide sequence