Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10780

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day3
143,523	+		BBR_RS10775	0.47	+1.0
143,523	+		BBR_RS10775	0.47	-0.0
143,550	-		BBR_RS10775	0.50	+0.4
143,592	-		BBR_RS10775	0.54	+0.3
143,595	+		BBR_RS10775	0.54	-1.0
143,599	-		BBR_RS10775	0.54	-0.8
143,600	+		BBR_RS10775	0.54	+0.2
143,626	+		BBR_RS10775	0.57	-0.9
143,649	-		BBR_RS10775	0.59	+3.7
143,670	+		BBR_RS10775	0.61	-0.8
143,684	+		BBR_RS10775	0.62	+3.0
143,703	-		BBR_RS10775	0.64	+1.0
143,719	-		BBR_RS10775	0.65	-0.7
143,740	+		BBR_RS10775	0.67	-0.2
143,755	+		BBR_RS10775	0.69	-0.3
143,758	-		BBR_RS10775	0.69	+2.9
143,761	+		BBR_RS10775	0.69	-0.5
143,761	+		BBR_RS10775	0.69	-1.7
143,761	+		BBR_RS10775	0.69	-0.3
143,761	-		BBR_RS10775	0.69	-1.8
143,783	+		BBR_RS10775	0.71	-0.3
143,791	-		BBR_RS10775	0.72	-1.0
143,793	+		BBR_RS10775	0.72	+3.1
143,793	+		BBR_RS10775	0.72	-0.6
143,828	+		BBR_RS10775	0.75	+2.7
143,828	+		BBR_RS10775	0.75	+1.9
143,828	+		BBR_RS10775	0.75	-0.0
143,828	+		BBR_RS10775	0.75	-1.0
143,828	+		BBR_RS10775	0.75	+2.0
143,836	-		BBR_RS10775	0.76	-1.2
143,853	-		BBR_RS10775	0.78	-0.8
143,860	+		BBR_RS10775	0.78	+0.6
143,873	+		BBR_RS10775	0.80	-0.8
143,873	+		BBR_RS10775	0.80	-1.1
143,887	+		BBR_RS10775	0.81	+3.2
143,887	+		BBR_RS10775	0.81	+0.8
143,897	+		BBR_RS10775	0.82	+3.3
143,905	-		BBR_RS10775	0.83	+3.0
143,907	+		BBR_RS10775	0.83	+3.7
143,907	+		BBR_RS10775	0.83	+1.8
143,907	+		BBR_RS10775	0.83	+2.4
143,907	+		BBR_RS10775	0.83	+1.4
143,907	+		BBR_RS10775	0.83	+2.0
143,907	+		BBR_RS10775	0.83	-0.9
143,907	+		BBR_RS10775	0.83	+1.6
143,907	+		BBR_RS10775	0.83	-0.4
143,915	-		BBR_RS10775	0.83	+3.4
143,917	+		BBR_RS10775	0.84	+2.9
143,917	+		BBR_RS10775	0.84	-0.2
143,927	+		BBR_RS10775	0.85	+0.7
143,953	+		BBR_RS10775	0.87	-0.5
143,953	+		BBR_RS10775	0.87	+2.4
143,953	+		BBR_RS10775	0.87	+3.2
143,953	+		BBR_RS10775	0.87	-0.5
143,953	+		BBR_RS10775	0.87	+2.4
143,953	+		BBR_RS10775	0.87	-2.0
143,953	+		BBR_RS10775	0.87	-1.8
143,953	+		BBR_RS10775	0.87	+0.3
143,953	+		BBR_RS10775	0.87	+1.5
143,961	-		BBR_RS10775	0.88	+0.6
143,961	-		BBR_RS10775	0.88	-1.3
143,961	-		BBR_RS10775	0.88	-0.3
143,961	-		BBR_RS10775	0.88	+0.5
143,961	-		BBR_RS10775	0.88	+1.0
143,961	-		BBR_RS10775	0.88	+1.0
143,961	-		BBR_RS10775	0.88	-2.3
143,961	-		BBR_RS10775	0.88	-0.7
143,962	+		BBR_RS10775	0.88	+2.2
143,998	-				+3.6
143,998	-				+0.5
144,003	+				-1.0
144,010	+				-0.4
144,012	-				-1.6
144,027	+				+3.9
144,027	+				-0.4
144,027	+				+0.1
144,027	+				+3.1
144,029	-				+0.0
144,029	-				-0.1
144,035	-				-1.1
144,035	-				-2.3
144,059	+				-0.6
144,059	+				-1.1
144,067	-				+1.4
144,070	+				-1.8
144,089	+				-0.1
144,089	+				-0.9
144,089	+				-1.0
144,089	+				-1.2
144,089	+				-1.2
144,089	+				-3.3
144,091	+				-1.5
144,097	-				-1.4
144,097	-				+3.1
144,097	-				-0.5
144,097	-				-1.7
144,097	-				-0.2
144,097	-				+1.6
144,097	-				+0.6
144,097	-				+0.8
144,097	-				+3.5
144,122	+				-0.3
144,130	-				+1.0
144,130	-				-1.3
144,130	-				+4.7
144,148	+				+4.3
144,148	+				+0.6
144,148	+				+1.7
144,148	+				+0.4
144,165	-				-0.5
144,166	+				+2.0
144,166	+				+1.3
144,179	-				-0.9
144,187	-				-2.1
144,197	+				-1.5
144,197	+				-1.4
144,202	-				+0.6
144,205	-				-2.5
144,205	-				-0.8
144,263	+				-1.3
144,263	+				-1.1
144,266	-				-0.2
144,276	+				-1.8
144,289	-				-2.1
144,298	+				+0.8
144,304	-				-2.4
144,306	-				+1.4
144,306	-				-0.4
144,321	+				-0.9
144,329	+				+1.8
144,329	+				+1.3
144,329	+				+2.2
144,329	+				-0.7
144,329	+				-0.2
144,329	+				-0.4
144,334	+				+1.6
144,337	-				-0.1
144,337	-				+2.1
144,343	+				+0.6
144,353	+				-0.9
144,353	+				+0.3
144,353	+				-0.1
144,353	+				-2.7
144,353	+				-0.3
144,353	+				-0.9
144,353	+				+2.4
144,353	+				-1.2
144,353	+				-0.6
144,355	+				-3.0
144,355	+				+1.0
144,358	-				+3.4
144,358	-				+3.0
144,361	+				-0.0
144,361	-				+0.3
144,361	-				-1.5
144,361	-				-1.0
144,361	-				-1.6
144,361	-				-0.6
144,374	-				-1.3
144,431	+				-0.2
144,469	+				-0.2
144,486	+				-1.8
144,511	+				-0.9
144,511	+				-1.3
144,577	-				-2.1
144,592	-				-2.0
144,601	+				-1.8
144,617	+				-1.2
144,617	+				-1.2
144,619	+				-1.5
144,619	+				-0.0
144,625	-				+0.6
144,643	+				+0.5
144,645	+				+0.7
144,694	+		BBR_RS10780	0.11	-1.5
144,702	-		BBR_RS10780	0.12	-1.5
144,702	-		BBR_RS10780	0.12	-0.2
144,702	-		BBR_RS10780	0.12	-1.5
144,702	-		BBR_RS10780	0.12	-3.6
144,750	-		BBR_RS10780	0.15	+3.3
144,757	+		BBR_RS10780	0.15	-1.8
144,787	-		BBR_RS10780	0.17	-1.6
144,788	+		BBR_RS10780	0.17	-0.6
144,808	-		BBR_RS10780	0.19	+0.3
144,813	-		BBR_RS10780	0.19	-1.2
144,835	+		BBR_RS10780	0.21	+0.0
144,841	-		BBR_RS10780	0.21	+3.0
144,843	-		BBR_RS10780	0.21	+1.0
144,853	+		BBR_RS10780	0.22	+1.5
144,867	+		BBR_RS10780	0.23	-0.8
144,896	-		BBR_RS10780	0.25	-2.8
144,904	+		BBR_RS10780	0.25	-1.0
144,929	+		BBR_RS10780	0.27	-1.3
144,942	-		BBR_RS10780	0.28	-0.1
144,944	+		BBR_RS10780	0.28	-1.8
144,946	+		BBR_RS10780	0.28	+2.4
144,946	+		BBR_RS10780	0.28	-1.8
144,946	+		BBR_RS10780	0.28	-1.9
144,946	+		BBR_RS10780	0.28	-1.3
144,954	-		BBR_RS10780	0.28	-2.0
144,959	+		BBR_RS10780	0.29	-1.5
144,977	-		BBR_RS10780	0.30	-1.5
144,978	+		BBR_RS10780	0.30	+1.6
144,987	-		BBR_RS10780	0.31	-0.5
144,990	+		BBR_RS10780	0.31	-0.8
144,990	+		BBR_RS10780	0.31	-1.8
144,993	-		BBR_RS10780	0.31	-0.6
145,006	+		BBR_RS10780	0.32	+3.0
145,006	+		BBR_RS10780	0.32	+0.6
145,011	+		BBR_RS10780	0.32	+0.0
145,027	+		BBR_RS10780	0.33	-2.0
145,028	+		BBR_RS10780	0.33	-1.7
145,028	+		BBR_RS10780	0.33	-2.7
145,030	-		BBR_RS10780	0.33	+2.7
145,045	+		BBR_RS10780	0.34	-2.0
145,067	+		BBR_RS10780	0.36	-3.0
145,102	+		BBR_RS10780	0.38	-0.8
145,110	+		BBR_RS10780	0.39	-1.8
145,110	+		BBR_RS10780	0.39	-1.2
145,118	-		BBR_RS10780	0.39	-0.1
145,144	+		BBR_RS10780	0.41	-1.8
145,152	+		BBR_RS10780	0.41	-0.8
145,152	+		BBR_RS10780	0.41	-0.9
145,152	+		BBR_RS10780	0.41	-1.1
145,152	+		BBR_RS10780	0.41	-2.1
145,152	+		BBR_RS10780	0.41	-0.4
145,152	+		BBR_RS10780	0.41	-1.7
145,152	+		BBR_RS10780	0.41	-1.4
145,152	+		BBR_RS10780	0.41	+0.9
145,152	-		BBR_RS10780	0.41	-0.8
145,160	-		BBR_RS10780	0.42	-2.0
145,160	-		BBR_RS10780	0.42	+3.2
145,160	-		BBR_RS10780	0.42	-0.7
145,164	+		BBR_RS10780	0.42	-1.6
145,167	-		BBR_RS10780	0.42	-0.5
145,199	+		BBR_RS10780	0.44	-1.0
145,241	+		BBR_RS10780	0.47	-0.1
145,251	+		BBR_RS10780	0.48	-2.0
145,267	+		BBR_RS10780	0.49	+0.8
145,275	+		BBR_RS10780	0.49	+2.5
145,275	+		BBR_RS10780	0.49	-0.2
145,276	-		BBR_RS10780	0.49	-1.2
145,285	+		BBR_RS10780	0.50	+0.2
145,295	-		BBR_RS10780	0.51	-0.4
145,321	+		BBR_RS10780	0.52	-0.7
145,321	+		BBR_RS10780	0.52	-1.7
145,321	+		BBR_RS10780	0.52	+0.4
145,321	+		BBR_RS10780	0.52	+0.2
145,321	+		BBR_RS10780	0.52	-2.6
145,329	-		BBR_RS10780	0.53	+3.2
145,337	-		BBR_RS10780	0.53	-1.5
145,337	-		BBR_RS10780	0.53	+0.5
145,339	-		BBR_RS10780	0.54	+0.4
145,352	+		BBR_RS10780	0.54	-0.9
145,373	-		BBR_RS10780	0.56	-0.5
145,392	+		BBR_RS10780	0.57	-1.4
145,413	+		BBR_RS10780	0.58	-1.0
145,434	+		BBR_RS10780	0.60	-0.0
145,435	+		BBR_RS10780	0.60	-1.9
145,435	+		BBR_RS10780	0.60	-1.1
145,474	+		BBR_RS10780	0.62	-3.0
145,474	+		BBR_RS10780	0.62	-1.1
145,482	-		BBR_RS10780	0.63	-0.4
145,482	-		BBR_RS10780	0.63	+0.1
145,487	-		BBR_RS10780	0.63	-1.5
145,487	-		BBR_RS10780	0.63	-1.0
145,487	-		BBR_RS10780	0.63	+2.2
145,489	+		BBR_RS10780	0.63	-2.2
145,497	-		BBR_RS10780	0.64	-0.2
145,497	-		BBR_RS10780	0.64	+2.5
145,509	-		BBR_RS10780	0.65	+1.1
145,539	+		BBR_RS10780	0.67	+1.4
145,549	+		BBR_RS10780	0.67	-1.0
145,553	+		BBR_RS10780	0.68	-0.8
145,563	-		BBR_RS10780	0.68	-1.7
145,572	+		BBR_RS10780	0.69	-0.1
145,572	+		BBR_RS10780	0.69	-0.3
145,572	+		BBR_RS10780	0.69	-3.4
145,575	-		BBR_RS10780	0.69	-1.6
145,592	+		BBR_RS10780	0.70	-2.1
145,592	+		BBR_RS10780	0.70	-0.6
145,592	+		BBR_RS10780	0.70	+1.3
145,600	+		BBR_RS10780	0.71	-0.9
145,600	-		BBR_RS10780	0.71	-0.2
145,602	+		BBR_RS10780	0.71	-1.4
145,605	-		BBR_RS10780	0.71	-1.0
145,619	+		BBR_RS10780	0.72	-0.4
145,619	+		BBR_RS10780	0.72	-0.9
145,619	+		BBR_RS10780	0.72	+0.0
145,627	-		BBR_RS10780	0.72	-0.3
145,633	+		BBR_RS10780	0.73	-1.4
145,648	+		BBR_RS10780	0.74	-1.3
145,648	+		BBR_RS10780	0.74	-0.8
145,648	+		BBR_RS10780	0.74	-0.1
145,648	+		BBR_RS10780	0.74	-1.7
145,648	+		BBR_RS10780	0.74	-2.2
145,654	+		BBR_RS10780	0.74	-0.7
145,656	-		BBR_RS10780	0.74	-1.2
145,656	-		BBR_RS10780	0.74	-1.8
145,656	-		BBR_RS10780	0.74	+1.5
145,658	-		BBR_RS10780	0.74	-1.5
145,673	+		BBR_RS10780	0.75	+0.6
145,683	+		BBR_RS10780	0.76	-1.4
145,684	+		BBR_RS10780	0.76	-0.4
145,691	-		BBR_RS10780	0.77	-1.6
145,696	+		BBR_RS10780	0.77	-1.1
145,710	-		BBR_RS10780	0.78	+1.3
145,728	-		BBR_RS10780	0.79	-1.1
145,773	+		BBR_RS10780	0.82	+1.7
145,783	-		BBR_RS10780	0.83	+2.0
145,784	+		BBR_RS10780	0.83	+0.9
145,792	-		BBR_RS10780	0.83	+2.0
145,792	-		BBR_RS10780	0.83	+3.3
145,799	+		BBR_RS10780	0.84	+2.9
145,832	+		BBR_RS10780	0.86	+3.7
145,887	+		BBR_RS10780	0.89	+2.5
145,894	+		BBR_RS10780	0.90	+0.6
145,900	+				-2.9
145,900	+				+0.3
145,900	+				-1.1
145,900	+				-1.2
145,900	+				-0.8
145,900	+				-1.6
145,900	+				+1.7
145,900	+				+2.5
145,905	+				+0.3
145,908	-				-0.8
145,908	-				-1.4
145,910	+				-2.6
145,927	+				-1.1
145,946	+				-0.3
145,946	+				-0.3
145,946	+				-1.2
145,946	+				-0.5
145,950	+				+0.8
145,954	-				-1.5
145,954	-				-1.0
145,972	+				-0.9
145,972	+				+0.2
145,972	+				+0.1
145,976	-				-2.2
146,048	+				-1.2
146,055	+				-0.3
146,056	-				+3.5
146,056	-				-1.9
146,063	+				+2.2
146,071	-				-1.4
146,114	-				+0.5
146,138	+				+0.5
146,138	+				-0.8
146,138	+				-0.7
146,146	-				-1.4
146,146	-				+3.9
146,171	-				-0.2
146,181	-				-2.5
146,186	-				-2.3
146,186	-				+0.8
146,206	+				-1.6
146,206	+				+2.5
146,209	-				+2.3
146,209	-				-0.7
146,214	+				-1.2
146,214	+				+2.5
146,261	-				-0.2
146,279	+				+1.5
146,297	+				-0.6
146,299	+				-0.4
146,299	+				+2.7
146,299	+				-1.3
146,302	-				-0.7
146,302	-				+2.1
146,313	+				+3.0
146,321	-				-0.8
146,329	-				-0.1
146,338	-				+2.4
146,338	-				-0.4
146,347	+				+2.9
146,352	-				-1.2
146,367	+				+1.1
146,369	+				+1.7
146,387	-				+1.5
146,389	+				-0.7
146,389	+				-0.7
146,395	+				-1.0
146,397	-				-1.9
146,397	-				+1.2
146,403	-				+2.1
146,403	-				-0.9
146,403	-				-2.3
146,444	+		BBR_RS10785	0.12	+3.0
146,444	+		BBR_RS10785	0.12	+4.3
146,456	+		BBR_RS10785	0.12	-1.2
146,462	-		BBR_RS10785	0.13	+3.3
146,465	-		BBR_RS10785	0.13	+0.4
146,479	+		BBR_RS10785	0.14	+2.2
146,489	-		BBR_RS10785	0.14	+2.9
146,561	+		BBR_RS10785	0.19	+0.1
146,579	+		BBR_RS10785	0.20	+1.4
146,599	+		BBR_RS10785	0.21	+1.1
146,609	+		BBR_RS10785	0.22	-1.2
146,617	+		BBR_RS10785	0.22	-0.9
146,619	-		BBR_RS10785	0.22	+2.5
146,619	-		BBR_RS10785	0.22	+2.4
146,629	+		BBR_RS10785	0.23	+4.6
146,637	-		BBR_RS10785	0.24	+2.5
146,637	-		BBR_RS10785	0.24	+2.7
146,637	-		BBR_RS10785	0.24	-0.8
146,637	-		BBR_RS10785	0.24	+2.2
146,672	+		BBR_RS10785	0.26	+0.6
146,685	+		BBR_RS10785	0.26	-0.6
146,690	+		BBR_RS10785	0.27	-0.9
146,737	+		BBR_RS10785	0.30	-1.5
146,737	+		BBR_RS10785	0.30	-1.0
146,745	-		BBR_RS10785	0.30	+2.3
146,745	-		BBR_RS10785	0.30	-0.2
146,746	-		BBR_RS10785	0.30	-0.5
146,748	+		BBR_RS10785	0.30	-2.8
146,756	-		BBR_RS10785	0.31	+0.4
146,771	+		BBR_RS10785	0.32	+0.7
146,771	-		BBR_RS10785	0.32	-1.6
146,779	-		BBR_RS10785	0.32	+1.3
146,789	+		BBR_RS10785	0.33	+2.0
146,789	+		BBR_RS10785	0.33	+0.0
146,789	+		BBR_RS10785	0.33	-0.4
146,789	+		BBR_RS10785	0.33	+3.1
146,789	+		BBR_RS10785	0.33	-1.6
146,797	-		BBR_RS10785	0.33	+0.5
146,804	+		BBR_RS10785	0.34	+3.9
146,814	-		BBR_RS10785	0.34	+2.4
146,814	-		BBR_RS10785	0.34	+3.0
146,819	+		BBR_RS10785	0.35	-0.1
146,819	+		BBR_RS10785	0.35	+2.4
146,819	+		BBR_RS10785	0.35	-0.2
146,825	+		BBR_RS10785	0.35	-0.2
146,835	+		BBR_RS10785	0.36	+0.1
146,852	+		BBR_RS10785	0.37	+0.7
146,852	+		BBR_RS10785	0.37	-0.7
146,852	+		BBR_RS10785	0.37	+3.0
146,887	+		BBR_RS10785	0.39	-2.0
146,887	+		BBR_RS10785	0.39	-2.2
146,899	+		BBR_RS10785	0.40	-0.1
146,906	+		BBR_RS10785	0.40	-1.2
146,907	-		BBR_RS10785	0.40	+0.4
146,907	-		BBR_RS10785	0.40	-0.2
146,908	-		BBR_RS10785	0.40	+0.1
146,909	-		BBR_RS10785	0.40	+3.1
146,910	+		BBR_RS10785	0.40	-1.4
146,910	+		BBR_RS10785	0.40	+2.9
146,910	+		BBR_RS10785	0.40	+0.1
146,910	+		BBR_RS10785	0.40	-2.2
146,925	-		BBR_RS10785	0.41	-0.7
146,936	+		BBR_RS10785	0.42	+1.8
146,936	+		BBR_RS10785	0.42	+3.5
146,942	+		BBR_RS10785	0.42	-2.2
146,942	+		BBR_RS10785	0.42	+2.3
146,944	-		BBR_RS10785	0.42	-0.8
146,950	-		BBR_RS10785	0.43	+0.1
146,952	+		BBR_RS10785	0.43	-0.7
146,969	+		BBR_RS10785	0.44	-1.4
146,969	+		BBR_RS10785	0.44	-1.0
146,969	+		BBR_RS10785	0.44	-2.4
146,969	-		BBR_RS10785	0.44	+3.2
146,977	-		BBR_RS10785	0.44	+0.2
146,977	-		BBR_RS10785	0.44	+3.4
147,036	+		BBR_RS10785	0.48	+2.4
147,036	+		BBR_RS10785	0.48	-1.2