Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03500

Experiment: Disodium Glutarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03495 and ABZR87_RS03500 are separated by 147 nucleotidesABZR87_RS03500 and ABZR87_RS03505 are separated by 59 nucleotides ABZR87_RS03495: ABZR87_RS03495 - exodeoxyribonuclease I, at 732,920 to 734,359 _RS03495 ABZR87_RS03500: ABZR87_RS03500 - alcohol dehydrogenase AdhP, at 734,507 to 735,529 _RS03500 ABZR87_RS03505: ABZR87_RS03505 - 2-hydroxyacid dehydrogenase, at 735,589 to 736,584 _RS03505 Position (kb) 734 735 736Strain fitness (log2 ratio) -2 -1 0 1 2 3at 733.668 kb on + strand, within ABZR87_RS03495at 733.668 kb on + strand, within ABZR87_RS03495at 733.668 kb on + strand, within ABZR87_RS03495at 733.668 kb on + strand, within ABZR87_RS03495at 733.669 kb on - strand, within ABZR87_RS03495at 733.669 kb on - strand, within ABZR87_RS03495at 733.669 kb on - strand, within ABZR87_RS03495at 733.669 kb on - strand, within ABZR87_RS03495at 733.669 kb on - strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.065 kb on + strand, within ABZR87_RS03495at 734.066 kb on - strand, within ABZR87_RS03495at 734.066 kb on - strand, within ABZR87_RS03495at 734.066 kb on - strand, within ABZR87_RS03495at 734.066 kb on - strand, within ABZR87_RS03495at 734.066 kb on - strand, within ABZR87_RS03495at 734.066 kb on - strand, within ABZR87_RS03495at 734.067 kb on + strand, within ABZR87_RS03495at 734.067 kb on + strand, within ABZR87_RS03495at 734.068 kb on - strand, within ABZR87_RS03495at 734.325 kb on + strandat 734.400 kb on + strandat 734.401 kb on - strandat 734.401 kb on - strandat 734.401 kb on - strandat 734.430 kb on + strandat 734.430 kb on + strandat 734.431 kb on - strandat 734.431 kb on - strandat 734.481 kb on + strandat 734.481 kb on + strandat 734.481 kb on + strandat 734.481 kb on + strandat 734.481 kb on + strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.482 kb on - strandat 734.532 kb on + strandat 734.635 kb on + strand, within ABZR87_RS03500at 734.635 kb on + strand, within ABZR87_RS03500at 734.635 kb on + strand, within ABZR87_RS03500at 734.636 kb on - strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.714 kb on + strand, within ABZR87_RS03500at 734.715 kb on - strand, within ABZR87_RS03500at 734.715 kb on - strand, within ABZR87_RS03500at 734.715 kb on - strand, within ABZR87_RS03500at 734.715 kb on - strand, within ABZR87_RS03500at 734.715 kb on - strand, within ABZR87_RS03500at 734.715 kb on - strand, within ABZR87_RS03500at 734.740 kb on - strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.783 kb on + strand, within ABZR87_RS03500at 734.784 kb on - strand, within ABZR87_RS03500at 734.784 kb on - strand, within ABZR87_RS03500at 734.837 kb on + strand, within ABZR87_RS03500at 734.837 kb on + strand, within ABZR87_RS03500at 734.838 kb on - strand, within ABZR87_RS03500at 734.838 kb on - strand, within ABZR87_RS03500at 734.838 kb on - strand, within ABZR87_RS03500at 734.859 kb on - strand, within ABZR87_RS03500at 734.859 kb on - strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.885 kb on + strand, within ABZR87_RS03500at 734.886 kb on - strand, within ABZR87_RS03500at 734.886 kb on - strand, within ABZR87_RS03500at 734.886 kb on - strand, within ABZR87_RS03500at 734.886 kb on - strand, within ABZR87_RS03500at 734.889 kb on + strand, within ABZR87_RS03500at 734.889 kb on + strand, within ABZR87_RS03500at 734.889 kb on + strand, within ABZR87_RS03500at 734.889 kb on + strand, within ABZR87_RS03500at 734.890 kb on - strand, within ABZR87_RS03500at 734.890 kb on - strand, within ABZR87_RS03500at 734.890 kb on - strand, within ABZR87_RS03500at 734.890 kb on - strand, within ABZR87_RS03500at 734.906 kb on + strand, within ABZR87_RS03500at 734.906 kb on + strand, within ABZR87_RS03500at 734.906 kb on + strand, within ABZR87_RS03500at 734.906 kb on + strand, within ABZR87_RS03500at 734.906 kb on + strand, within ABZR87_RS03500at 734.906 kb on + strand, within ABZR87_RS03500at 734.907 kb on - strand, within ABZR87_RS03500at 734.907 kb on - strand, within ABZR87_RS03500at 734.907 kb on - strand, within ABZR87_RS03500at 734.907 kb on - strand, within ABZR87_RS03500at 734.970 kb on + strand, within ABZR87_RS03500at 734.970 kb on + strand, within ABZR87_RS03500at 734.971 kb on - strand, within ABZR87_RS03500at 734.971 kb on - strand, within ABZR87_RS03500at 734.971 kb on - strand, within ABZR87_RS03500at 734.971 kb on - strand, within ABZR87_RS03500at 734.971 kb on - strand, within ABZR87_RS03500at 734.978 kb on + strand, within ABZR87_RS03500at 734.978 kb on + strand, within ABZR87_RS03500at 734.978 kb on + strand, within ABZR87_RS03500at 734.979 kb on - strand, within ABZR87_RS03500at 734.979 kb on - strand, within ABZR87_RS03500at 734.979 kb on - strand, within ABZR87_RS03500at 734.979 kb on - strand, within ABZR87_RS03500at 735.066 kb on - strand, within ABZR87_RS03500at 735.066 kb on - strand, within ABZR87_RS03500at 735.066 kb on - strand, within ABZR87_RS03500at 735.210 kb on + strand, within ABZR87_RS03500at 735.210 kb on + strand, within ABZR87_RS03500at 735.210 kb on + strand, within ABZR87_RS03500at 735.210 kb on + strand, within ABZR87_RS03500at 735.210 kb on + strand, within ABZR87_RS03500at 735.211 kb on - strand, within ABZR87_RS03500at 735.211 kb on - strand, within ABZR87_RS03500at 735.429 kb on + strandat 735.430 kb on - strandat 735.430 kb on - strandat 735.430 kb on - strandat 735.465 kb on + strandat 735.553 kb on + strandat 735.553 kb on + strandat 735.554 kb on - strandat 735.554 kb on - strandat 735.554 kb on - strandat 735.619 kb on + strandat 735.737 kb on + strand, within ABZR87_RS03505at 735.737 kb on + strand, within ABZR87_RS03505at 735.737 kb on + strand, within ABZR87_RS03505at 735.737 kb on + strand, within ABZR87_RS03505at 735.737 kb on + strand, within ABZR87_RS03505at 735.737 kb on + strand, within ABZR87_RS03505at 735.738 kb on - strand, within ABZR87_RS03505at 735.799 kb on - strand, within ABZR87_RS03505at 735.893 kb on - strand, within ABZR87_RS03505at 736.156 kb on + strand, within ABZR87_RS03505at 736.156 kb on + strand, within ABZR87_RS03505at 736.156 kb on + strand, within ABZR87_RS03505at 736.157 kb on - strand, within ABZR87_RS03505at 736.287 kb on + strand, within ABZR87_RS03505at 736.287 kb on + strand, within ABZR87_RS03505at 736.287 kb on + strand, within ABZR87_RS03505at 736.287 kb on + strand, within ABZR87_RS03505at 736.287 kb on + strand, within ABZR87_RS03505at 736.288 kb on - strand, within ABZR87_RS03505at 736.288 kb on - strand, within ABZR87_RS03505at 736.288 kb on - strand, within ABZR87_RS03505at 736.288 kb on - strand, within ABZR87_RS03505at 736.372 kb on + strand, within ABZR87_RS03505at 736.372 kb on + strand, within ABZR87_RS03505at 736.373 kb on - strand, within ABZR87_RS03505at 736.400 kb on - strand, within ABZR87_RS03505at 736.492 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
remove
733,668 + ABZR87_RS03495 0.52 +0.8
733,668 + ABZR87_RS03495 0.52 -0.7
733,668 + ABZR87_RS03495 0.52 +0.2
733,668 + ABZR87_RS03495 0.52 +1.1
733,669 - ABZR87_RS03495 0.52 +0.3
733,669 - ABZR87_RS03495 0.52 -0.3
733,669 - ABZR87_RS03495 0.52 -0.3
733,669 - ABZR87_RS03495 0.52 -0.6
733,669 - ABZR87_RS03495 0.52 -1.4
734,065 + ABZR87_RS03495 0.80 +1.7
734,065 + ABZR87_RS03495 0.80 +0.2
734,065 + ABZR87_RS03495 0.80 +0.6
734,065 + ABZR87_RS03495 0.80 +1.3
734,065 + ABZR87_RS03495 0.80 +0.6
734,065 + ABZR87_RS03495 0.80 +2.2
734,065 + ABZR87_RS03495 0.80 +0.3
734,065 + ABZR87_RS03495 0.80 -0.2
734,065 + ABZR87_RS03495 0.80 -1.6
734,065 + ABZR87_RS03495 0.80 -0.2
734,066 - ABZR87_RS03495 0.80 +0.2
734,066 - ABZR87_RS03495 0.80 -1.5
734,066 - ABZR87_RS03495 0.80 -2.0
734,066 - ABZR87_RS03495 0.80 +0.4
734,066 - ABZR87_RS03495 0.80 -0.3
734,066 - ABZR87_RS03495 0.80 +3.1
734,067 + ABZR87_RS03495 0.80 -1.7
734,067 + ABZR87_RS03495 0.80 -0.2
734,068 - ABZR87_RS03495 0.80 +0.3
734,325 + +2.7
734,400 + +0.8
734,401 - -0.7
734,401 - +0.3
734,401 - -1.3
734,430 + +0.8
734,430 + +0.3
734,431 - -0.1
734,431 - +1.0
734,481 + +2.2
734,481 + -0.1
734,481 + +0.3
734,481 + +2.2
734,481 + -0.9
734,482 - +3.1
734,482 - -0.8
734,482 - -0.4
734,482 - -0.1
734,482 - -0.4
734,482 - +0.1
734,482 - +0.2
734,482 - -0.6
734,482 - -0.8
734,532 + +0.7
734,635 + ABZR87_RS03500 0.13 -0.1
734,635 + ABZR87_RS03500 0.13 +0.5
734,635 + ABZR87_RS03500 0.13 +1.4
734,636 - ABZR87_RS03500 0.13 -0.0
734,714 + ABZR87_RS03500 0.20 +0.3
734,714 + ABZR87_RS03500 0.20 +0.0
734,714 + ABZR87_RS03500 0.20 +0.9
734,714 + ABZR87_RS03500 0.20 +0.9
734,714 + ABZR87_RS03500 0.20 +0.5
734,714 + ABZR87_RS03500 0.20 +0.3
734,714 + ABZR87_RS03500 0.20 -0.4
734,714 + ABZR87_RS03500 0.20 +0.2
734,715 - ABZR87_RS03500 0.20 -0.6
734,715 - ABZR87_RS03500 0.20 -0.1
734,715 - ABZR87_RS03500 0.20 -0.0
734,715 - ABZR87_RS03500 0.20 -0.6
734,715 - ABZR87_RS03500 0.20 +3.1
734,715 - ABZR87_RS03500 0.20 -0.9
734,740 - ABZR87_RS03500 0.23 +0.8
734,783 + ABZR87_RS03500 0.27 -0.8
734,783 + ABZR87_RS03500 0.27 +0.1
734,783 + ABZR87_RS03500 0.27 +0.0
734,783 + ABZR87_RS03500 0.27 +0.3
734,783 + ABZR87_RS03500 0.27 +0.8
734,783 + ABZR87_RS03500 0.27 +0.4
734,783 + ABZR87_RS03500 0.27 -0.5
734,784 - ABZR87_RS03500 0.27 -0.4
734,784 - ABZR87_RS03500 0.27 -1.3
734,837 + ABZR87_RS03500 0.32 -0.6
734,837 + ABZR87_RS03500 0.32 +0.3
734,838 - ABZR87_RS03500 0.32 -1.1
734,838 - ABZR87_RS03500 0.32 +0.3
734,838 - ABZR87_RS03500 0.32 -0.5
734,859 - ABZR87_RS03500 0.34 -1.2
734,859 - ABZR87_RS03500 0.34 -0.1
734,885 + ABZR87_RS03500 0.37 +0.6
734,885 + ABZR87_RS03500 0.37 +1.3
734,885 + ABZR87_RS03500 0.37 +0.1
734,885 + ABZR87_RS03500 0.37 +0.7
734,885 + ABZR87_RS03500 0.37 +0.8
734,885 + ABZR87_RS03500 0.37 +0.5
734,885 + ABZR87_RS03500 0.37 +0.5
734,885 + ABZR87_RS03500 0.37 +1.0
734,885 + ABZR87_RS03500 0.37 -1.3
734,885 + ABZR87_RS03500 0.37 +1.8
734,885 + ABZR87_RS03500 0.37 -0.8
734,885 + ABZR87_RS03500 0.37 +0.4
734,886 - ABZR87_RS03500 0.37 -1.5
734,886 - ABZR87_RS03500 0.37 -0.2
734,886 - ABZR87_RS03500 0.37 +0.2
734,886 - ABZR87_RS03500 0.37 +1.2
734,889 + ABZR87_RS03500 0.37 +0.5
734,889 + ABZR87_RS03500 0.37 +0.8
734,889 + ABZR87_RS03500 0.37 -0.1
734,889 + ABZR87_RS03500 0.37 -0.9
734,890 - ABZR87_RS03500 0.37 +0.0
734,890 - ABZR87_RS03500 0.37 +0.2
734,890 - ABZR87_RS03500 0.37 +0.1
734,890 - ABZR87_RS03500 0.37 +0.2
734,906 + ABZR87_RS03500 0.39 +1.0
734,906 + ABZR87_RS03500 0.39 +0.7
734,906 + ABZR87_RS03500 0.39 +1.1
734,906 + ABZR87_RS03500 0.39 +0.2
734,906 + ABZR87_RS03500 0.39 +1.0
734,906 + ABZR87_RS03500 0.39 +1.9
734,907 - ABZR87_RS03500 0.39 -1.0
734,907 - ABZR87_RS03500 0.39 -0.2
734,907 - ABZR87_RS03500 0.39 -1.2
734,907 - ABZR87_RS03500 0.39 -1.0
734,970 + ABZR87_RS03500 0.45 +0.4
734,970 + ABZR87_RS03500 0.45 +0.9
734,971 - ABZR87_RS03500 0.45 -0.3
734,971 - ABZR87_RS03500 0.45 -0.8
734,971 - ABZR87_RS03500 0.45 -0.1
734,971 - ABZR87_RS03500 0.45 -0.2
734,971 - ABZR87_RS03500 0.45 +0.6
734,978 + ABZR87_RS03500 0.46 +0.2
734,978 + ABZR87_RS03500 0.46 +1.3
734,978 + ABZR87_RS03500 0.46 +0.4
734,979 - ABZR87_RS03500 0.46 +0.2
734,979 - ABZR87_RS03500 0.46 -0.7
734,979 - ABZR87_RS03500 0.46 -0.7
734,979 - ABZR87_RS03500 0.46 +0.8
735,066 - ABZR87_RS03500 0.55 -0.6
735,066 - ABZR87_RS03500 0.55 -0.3
735,066 - ABZR87_RS03500 0.55 +0.6
735,210 + ABZR87_RS03500 0.69 +0.7
735,210 + ABZR87_RS03500 0.69 +1.0
735,210 + ABZR87_RS03500 0.69 +0.4
735,210 + ABZR87_RS03500 0.69 +0.7
735,210 + ABZR87_RS03500 0.69 +0.9
735,211 - ABZR87_RS03500 0.69 -0.5
735,211 - ABZR87_RS03500 0.69 -0.3
735,429 + +0.5
735,430 - +0.4
735,430 - +0.1
735,430 - -0.9
735,465 + +0.3
735,553 + +0.9
735,553 + +0.5
735,554 - -1.0
735,554 - +0.4
735,554 - +0.1
735,619 + -0.2
735,737 + ABZR87_RS03505 0.15 +0.8
735,737 + ABZR87_RS03505 0.15 +2.6
735,737 + ABZR87_RS03505 0.15 +0.8
735,737 + ABZR87_RS03505 0.15 +0.5
735,737 + ABZR87_RS03505 0.15 +0.5
735,737 + ABZR87_RS03505 0.15 +1.6
735,738 - ABZR87_RS03505 0.15 +0.4
735,799 - ABZR87_RS03505 0.21 +2.6
735,893 - ABZR87_RS03505 0.31 -0.3
736,156 + ABZR87_RS03505 0.57 +1.1
736,156 + ABZR87_RS03505 0.57 +1.2
736,156 + ABZR87_RS03505 0.57 +0.6
736,157 - ABZR87_RS03505 0.57 +0.5
736,287 + ABZR87_RS03505 0.70 -0.0
736,287 + ABZR87_RS03505 0.70 +1.2
736,287 + ABZR87_RS03505 0.70 +0.3
736,287 + ABZR87_RS03505 0.70 +1.6
736,287 + ABZR87_RS03505 0.70 -0.8
736,288 - ABZR87_RS03505 0.70 +0.7
736,288 - ABZR87_RS03505 0.70 -0.3
736,288 - ABZR87_RS03505 0.70 +0.1
736,288 - ABZR87_RS03505 0.70 +1.1
736,372 + ABZR87_RS03505 0.79 +1.1
736,372 + ABZR87_RS03505 0.79 +0.1
736,373 - ABZR87_RS03505 0.79 +0.3
736,400 - ABZR87_RS03505 0.81 -0.2
736,492 - +0.5

Or see this region's nucleotide sequence