Experiment: Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4295 and BT4296 are separated by 9 nucleotides BT4296 and BT4297 are separated by 9 nucleotides
BT4295: BT4295 - putative chitobiase (NCBI ptt file), at 5,657,707 to 5,659,551
BT4295
BT4296: BT4296 - hypothetical protein (NCBI ptt file), at 5,659,561 to 5,660,598
BT4296
BT4297: BT4297 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,660,608 to 5,662,659
BT4297
Position (kb) 5659
5660
5661 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5658.588 kb on + strand, within BT4295 at 5658.645 kb on + strand, within BT4295 at 5658.646 kb on - strand, within BT4295 at 5658.652 kb on - strand, within BT4295 at 5658.738 kb on - strand, within BT4295 at 5658.741 kb on + strand, within BT4295 at 5658.742 kb on - strand, within BT4295 at 5658.742 kb on - strand, within BT4295 at 5658.743 kb on + strand, within BT4295 at 5658.743 kb on + strand, within BT4295 at 5658.744 kb on - strand, within BT4295 at 5658.815 kb on + strand, within BT4295 at 5658.847 kb on - strand, within BT4295 at 5658.849 kb on - strand, within BT4295 at 5658.885 kb on + strand, within BT4295 at 5658.885 kb on + strand, within BT4295 at 5658.885 kb on + strand, within BT4295 at 5658.894 kb on - strand, within BT4295 at 5658.894 kb on - strand, within BT4295 at 5658.932 kb on - strand, within BT4295 at 5658.932 kb on - strand, within BT4295 at 5658.983 kb on - strand, within BT4295 at 5659.062 kb on + strand, within BT4295 at 5659.068 kb on + strand, within BT4295 at 5659.130 kb on - strand, within BT4295 at 5659.140 kb on - strand, within BT4295 at 5659.140 kb on - strand, within BT4295 at 5659.227 kb on - strand, within BT4295 at 5659.231 kb on + strand, within BT4295 at 5659.309 kb on + strand, within BT4295 at 5659.310 kb on - strand, within BT4295 at 5659.310 kb on - strand, within BT4295 at 5659.357 kb on + strand, within BT4295 at 5659.436 kb on - strand at 5659.508 kb on - strand at 5659.562 kb on + strand at 5659.598 kb on - strand at 5659.670 kb on + strand, within BT4296 at 5659.696 kb on - strand, within BT4296 at 5659.727 kb on + strand, within BT4296 at 5659.754 kb on - strand, within BT4296 at 5659.866 kb on + strand, within BT4296 at 5659.867 kb on - strand, within BT4296 at 5659.871 kb on - strand, within BT4296 at 5659.992 kb on + strand, within BT4296 at 5660.011 kb on + strand, within BT4296 at 5660.030 kb on + strand, within BT4296 at 5660.039 kb on + strand, within BT4296 at 5660.063 kb on + strand, within BT4296 at 5660.066 kb on + strand, within BT4296 at 5660.082 kb on + strand, within BT4296 at 5660.082 kb on + strand, within BT4296 at 5660.113 kb on - strand, within BT4296 at 5660.118 kb on + strand, within BT4296 at 5660.118 kb on + strand, within BT4296 at 5660.209 kb on + strand, within BT4296 at 5660.299 kb on + strand, within BT4296 at 5660.301 kb on + strand, within BT4296 at 5660.321 kb on + strand, within BT4296 at 5660.357 kb on - strand, within BT4296 at 5660.431 kb on + strand, within BT4296 at 5660.453 kb on + strand, within BT4296 at 5660.453 kb on + strand, within BT4296 at 5660.542 kb on + strand at 5660.543 kb on - strand at 5660.543 kb on - strand at 5660.561 kb on - strand at 5660.580 kb on + strand at 5660.737 kb on - strand at 5660.828 kb on + strand, within BT4297 at 5660.971 kb on + strand, within BT4297 at 5661.028 kb on - strand, within BT4297 at 5661.034 kb on - strand, within BT4297 at 5661.040 kb on - strand, within BT4297 at 5661.066 kb on + strand, within BT4297 at 5661.091 kb on + strand, within BT4297 at 5661.095 kb on + strand, within BT4297 at 5661.096 kb on - strand, within BT4297 at 5661.096 kb on - strand, within BT4297 at 5661.206 kb on + strand, within BT4297 at 5661.206 kb on + strand, within BT4297 at 5661.377 kb on + strand, within BT4297 at 5661.378 kb on - strand, within BT4297 at 5661.408 kb on + strand, within BT4297 at 5661.412 kb on + strand, within BT4297 at 5661.413 kb on - strand, within BT4297 at 5661.427 kb on + strand, within BT4297 at 5661.431 kb on + strand, within BT4297
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM remove 5,658,588 + BT4295 0.48 -2.3 5,658,645 + BT4295 0.51 -3.0 5,658,646 - BT4295 0.51 +1.0 5,658,652 - BT4295 0.51 -2.0 5,658,738 - BT4295 0.56 -1.0 5,658,741 + BT4295 0.56 +1.0 5,658,742 - BT4295 0.56 +1.6 5,658,742 - BT4295 0.56 -0.0 5,658,743 + BT4295 0.56 +1.6 5,658,743 + BT4295 0.56 +2.2 5,658,744 - BT4295 0.56 -0.0 5,658,815 + BT4295 0.60 -0.0 5,658,847 - BT4295 0.62 -0.0 5,658,849 - BT4295 0.62 -1.0 5,658,885 + BT4295 0.64 -1.9 5,658,885 + BT4295 0.64 +2.3 5,658,885 + BT4295 0.64 +2.2 5,658,894 - BT4295 0.64 -0.5 5,658,894 - BT4295 0.64 -0.0 5,658,932 - BT4295 0.66 -0.0 5,658,932 - BT4295 0.66 +0.4 5,658,983 - BT4295 0.69 -1.0 5,659,062 + BT4295 0.73 +2.0 5,659,068 + BT4295 0.74 -2.8 5,659,130 - BT4295 0.77 -2.6 5,659,140 - BT4295 0.78 -0.5 5,659,140 - BT4295 0.78 +0.6 5,659,227 - BT4295 0.82 -0.6 5,659,231 + BT4295 0.83 -0.7 5,659,309 + BT4295 0.87 +0.6 5,659,310 - BT4295 0.87 -1.9 5,659,310 - BT4295 0.87 -1.0 5,659,357 + BT4295 0.89 -1.0 5,659,436 - +0.4 5,659,508 - +1.0 5,659,562 + -1.1 5,659,598 - -1.6 5,659,670 + BT4296 0.11 -1.4 5,659,696 - BT4296 0.13 -4.1 5,659,727 + BT4296 0.16 -1.3 5,659,754 - BT4296 0.19 -0.3 5,659,866 + BT4296 0.29 -0.4 5,659,867 - BT4296 0.29 -3.9 5,659,871 - BT4296 0.30 -0.6 5,659,992 + BT4296 0.42 -0.0 5,660,011 + BT4296 0.43 +0.7 5,660,030 + BT4296 0.45 -0.0 5,660,039 + BT4296 0.46 -0.4 5,660,063 + BT4296 0.48 -2.6 5,660,066 + BT4296 0.49 -1.2 5,660,082 + BT4296 0.50 -0.2 5,660,082 + BT4296 0.50 -0.0 5,660,113 - BT4296 0.53 +1.0 5,660,118 + BT4296 0.54 -0.3 5,660,118 + BT4296 0.54 +0.5 5,660,209 + BT4296 0.62 -2.9 5,660,299 + BT4296 0.71 -0.2 5,660,301 + BT4296 0.71 -2.3 5,660,321 + BT4296 0.73 +0.4 5,660,357 - BT4296 0.77 -1.6 5,660,431 + BT4296 0.84 -4.7 5,660,453 + BT4296 0.86 -1.9 5,660,453 + BT4296 0.86 +1.0 5,660,542 + -1.5 5,660,543 - -0.0 5,660,543 - -0.4 5,660,561 - -1.6 5,660,580 + +1.0 5,660,737 - -0.6 5,660,828 + BT4297 0.11 -2.5 5,660,971 + BT4297 0.18 -1.0 5,661,028 - BT4297 0.20 +0.4 5,661,034 - BT4297 0.21 -2.3 5,661,040 - BT4297 0.21 -1.0 5,661,066 + BT4297 0.22 +0.2 5,661,091 + BT4297 0.24 -2.8 5,661,095 + BT4297 0.24 +0.5 5,661,096 - BT4297 0.24 +2.8 5,661,096 - BT4297 0.24 -1.6 5,661,206 + BT4297 0.29 +1.0 5,661,206 + BT4297 0.29 -1.6 5,661,377 + BT4297 0.37 -1.7 5,661,378 - BT4297 0.38 +1.3 5,661,408 + BT4297 0.39 -0.0 5,661,412 + BT4297 0.39 -1.4 5,661,413 - BT4297 0.39 +1.4 5,661,427 + BT4297 0.40 +1.6 5,661,431 + BT4297 0.40 +0.3
Or see this region's nucleotide sequence