Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22635

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22630 and ABZR87_RS22635 are separated by 145 nucleotidesABZR87_RS22635 and ABZR87_RS22640 are separated by 105 nucleotidesABZR87_RS22640 and ABZR87_RS22645 are separated by 237 nucleotides ABZR87_RS22630: ABZR87_RS22630 - SDR family oxidoreductase, at 1,435,399 to 1,436,421 _RS22630 ABZR87_RS22635: ABZR87_RS22635 - hypothetical protein, at 1,436,567 to 1,436,761 _RS22635 ABZR87_RS22640: ABZR87_RS22640 - hypothetical protein, at 1,436,867 to 1,437,151 _RS22640 ABZR87_RS22645: ABZR87_RS22645 - hypothetical protein, at 1,437,389 to 1,437,619 _RS22645 Position (kb) 1436 1437Strain fitness (log2 ratio) -1 0 1 2at 1435.656 kb on + strand, within ABZR87_RS22630at 1435.656 kb on + strand, within ABZR87_RS22630at 1435.715 kb on + strand, within ABZR87_RS22630at 1435.716 kb on - strand, within ABZR87_RS22630at 1435.716 kb on - strand, within ABZR87_RS22630at 1435.716 kb on - strand, within ABZR87_RS22630at 1435.716 kb on - strand, within ABZR87_RS22630at 1435.716 kb on - strand, within ABZR87_RS22630at 1435.734 kb on + strand, within ABZR87_RS22630at 1435.799 kb on + strand, within ABZR87_RS22630at 1436.045 kb on + strand, within ABZR87_RS22630at 1436.045 kb on + strand, within ABZR87_RS22630at 1436.046 kb on - strand, within ABZR87_RS22630at 1436.142 kb on + strand, within ABZR87_RS22630at 1436.832 kb on + strandat 1436.866 kb on - strandat 1437.270 kb on - strandat 1437.270 kb on - strandat 1437.308 kb on + strandat 1437.309 kb on - strandat 1437.457 kb on - strand, within ABZR87_RS22645at 1437.457 kb on - strand, within ABZR87_RS22645at 1437.480 kb on + strand, within ABZR87_RS22645at 1437.480 kb on + strand, within ABZR87_RS22645at 1437.684 kb on - strandat 1437.759 kb on + strandat 1437.759 kb on + strandat 1437.759 kb on + strandat 1437.759 kb on + strandat 1437.760 kb on - strandat 1437.760 kb on - strandat 1437.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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1,435,656 + ABZR87_RS22630 0.25 -0.7
1,435,656 + ABZR87_RS22630 0.25 -0.1
1,435,715 + ABZR87_RS22630 0.31 -0.8
1,435,716 - ABZR87_RS22630 0.31 -0.7
1,435,716 - ABZR87_RS22630 0.31 +0.2
1,435,716 - ABZR87_RS22630 0.31 -0.7
1,435,716 - ABZR87_RS22630 0.31 +1.2
1,435,716 - ABZR87_RS22630 0.31 +0.4
1,435,734 + ABZR87_RS22630 0.33 +0.5
1,435,799 + ABZR87_RS22630 0.39 +0.1
1,436,045 + ABZR87_RS22630 0.63 -0.2
1,436,045 + ABZR87_RS22630 0.63 -0.3
1,436,046 - ABZR87_RS22630 0.63 +0.6
1,436,142 + ABZR87_RS22630 0.73 +0.5
1,436,832 + -0.1
1,436,866 - +1.0
1,437,270 - +0.0
1,437,270 - -1.7
1,437,308 + +0.6
1,437,309 - +0.0
1,437,457 - ABZR87_RS22645 0.29 +1.9
1,437,457 - ABZR87_RS22645 0.29 -0.1
1,437,480 + ABZR87_RS22645 0.39 +0.7
1,437,480 + ABZR87_RS22645 0.39 +1.0
1,437,684 - -0.8
1,437,759 + +0.1
1,437,759 + +0.0
1,437,759 + +0.0
1,437,759 + +0.1
1,437,760 - -0.1
1,437,760 - +1.8
1,437,760 - +0.3

Or see this region's nucleotide sequence