Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19475

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19470 and ABZR87_RS19475 are separated by 38 nucleotidesABZR87_RS19475 and ABZR87_RS19480 are separated by 173 nucleotides ABZR87_RS19470: ABZR87_RS19470 - UDP-glucose 4-epimerase GalE, at 737,725 to 738,750 _RS19470 ABZR87_RS19475: ABZR87_RS19475 - PAS domain-containing protein, at 738,789 to 740,216 _RS19475 ABZR87_RS19480: ABZR87_RS19480 - methyl-accepting chemotaxis protein, at 740,390 to 741,931 _RS19480 Position (kb) 738 739 740 741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.019 kb on + strand, within ABZR87_RS19470at 738.020 kb on - strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.127 kb on - strand, within ABZR87_RS19470at 738.247 kb on + strand, within ABZR87_RS19470at 738.247 kb on + strand, within ABZR87_RS19470at 738.248 kb on - strand, within ABZR87_RS19470at 738.256 kb on + strand, within ABZR87_RS19470at 738.256 kb on + strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.335 kb on + strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.553 kb on + strand, within ABZR87_RS19470at 738.583 kb on + strand, within ABZR87_RS19470at 738.625 kb on + strand, within ABZR87_RS19470at 738.625 kb on + strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.822 kb on - strandat 739.144 kb on + strand, within ABZR87_RS19475at 739.192 kb on + strand, within ABZR87_RS19475at 739.193 kb on - strand, within ABZR87_RS19475at 739.238 kb on + strand, within ABZR87_RS19475at 739.239 kb on - strand, within ABZR87_RS19475at 739.392 kb on + strand, within ABZR87_RS19475at 739.393 kb on - strand, within ABZR87_RS19475at 739.518 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.753 kb on - strand, within ABZR87_RS19475at 739.754 kb on + strand, within ABZR87_RS19475at 739.754 kb on + strand, within ABZR87_RS19475at 739.754 kb on + strand, within ABZR87_RS19475at 739.754 kb on + strand, within ABZR87_RS19475at 739.755 kb on - strand, within ABZR87_RS19475at 739.755 kb on - strand, within ABZR87_RS19475at 739.755 kb on - strand, within ABZR87_RS19475at 739.869 kb on + strand, within ABZR87_RS19475at 739.870 kb on - strand, within ABZR87_RS19475at 739.908 kb on + strand, within ABZR87_RS19475at 739.909 kb on - strand, within ABZR87_RS19475at 739.909 kb on - strand, within ABZR87_RS19475at 739.909 kb on - strand, within ABZR87_RS19475at 739.983 kb on - strand, within ABZR87_RS19475at 740.237 kb on + strandat 740.261 kb on + strandat 740.261 kb on + strandat 740.261 kb on + strandat 740.261 kb on + strandat 740.262 kb on - strandat 740.262 kb on - strandat 740.298 kb on + strandat 740.318 kb on + strandat 740.319 kb on - strandat 740.561 kb on + strand, within ABZR87_RS19480at 740.561 kb on + strand, within ABZR87_RS19480at 740.561 kb on + strand, within ABZR87_RS19480at 740.562 kb on - strand, within ABZR87_RS19480at 740.657 kb on + strand, within ABZR87_RS19480at 740.658 kb on - strand, within ABZR87_RS19480at 740.813 kb on + strand, within ABZR87_RS19480at 740.861 kb on + strand, within ABZR87_RS19480at 740.861 kb on + strand, within ABZR87_RS19480at 740.862 kb on - strand, within ABZR87_RS19480at 740.862 kb on - strand, within ABZR87_RS19480at 740.862 kb on - strand, within ABZR87_RS19480at 740.862 kb on - strand, within ABZR87_RS19480at 740.870 kb on + strand, within ABZR87_RS19480at 740.871 kb on - strand, within ABZR87_RS19480at 740.871 kb on - strand, within ABZR87_RS19480at 740.873 kb on + strand, within ABZR87_RS19480at 740.873 kb on + strand, within ABZR87_RS19480at 740.874 kb on - strand, within ABZR87_RS19480at 740.909 kb on + strand, within ABZR87_RS19480at 740.909 kb on + strand, within ABZR87_RS19480at 740.909 kb on + strand, within ABZR87_RS19480at 740.910 kb on - strand, within ABZR87_RS19480at 740.910 kb on - strand, within ABZR87_RS19480at 740.910 kb on - strand, within ABZR87_RS19480at 740.912 kb on - strand, within ABZR87_RS19480at 740.912 kb on - strand, within ABZR87_RS19480at 740.912 kb on - strand, within ABZR87_RS19480

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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737,906 + ABZR87_RS19470 0.18 +0.7
737,906 + ABZR87_RS19470 0.18 -1.6
737,906 + ABZR87_RS19470 0.18 -1.6
737,906 + ABZR87_RS19470 0.18 -0.3
737,906 + ABZR87_RS19470 0.18 -0.8
737,906 + ABZR87_RS19470 0.18 -0.3
738,016 + ABZR87_RS19470 0.28 +0.3
738,016 + ABZR87_RS19470 0.28 +0.1
738,016 + ABZR87_RS19470 0.28 -0.1
738,019 + ABZR87_RS19470 0.29 -0.3
738,020 - ABZR87_RS19470 0.29 +0.6
738,112 + ABZR87_RS19470 0.38 -2.2
738,112 + ABZR87_RS19470 0.38 -1.2
738,112 + ABZR87_RS19470 0.38 -1.6
738,112 + ABZR87_RS19470 0.38 +1.5
738,112 + ABZR87_RS19470 0.38 -2.4
738,112 + ABZR87_RS19470 0.38 -1.3
738,113 - ABZR87_RS19470 0.38 -0.4
738,113 - ABZR87_RS19470 0.38 -0.5
738,113 - ABZR87_RS19470 0.38 -3.1
738,113 - ABZR87_RS19470 0.38 -1.7
738,113 - ABZR87_RS19470 0.38 -0.1
738,127 - ABZR87_RS19470 0.39 +0.4
738,247 + ABZR87_RS19470 0.51 -0.9
738,247 + ABZR87_RS19470 0.51 +1.3
738,248 - ABZR87_RS19470 0.51 -0.8
738,256 + ABZR87_RS19470 0.52 -1.4
738,256 + ABZR87_RS19470 0.52 -1.3
738,257 - ABZR87_RS19470 0.52 -0.5
738,257 - ABZR87_RS19470 0.52 -0.6
738,257 - ABZR87_RS19470 0.52 -0.5
738,334 + ABZR87_RS19470 0.59 -2.4
738,334 + ABZR87_RS19470 0.59 +0.7
738,334 + ABZR87_RS19470 0.59 -0.6
738,334 + ABZR87_RS19470 0.59 -0.2
738,335 + ABZR87_RS19470 0.59 -1.1
738,335 - ABZR87_RS19470 0.59 -0.7
738,335 - ABZR87_RS19470 0.59 -0.9
738,335 - ABZR87_RS19470 0.59 +0.2
738,335 - ABZR87_RS19470 0.59 +0.1
738,424 + ABZR87_RS19470 0.68 +0.2
738,424 + ABZR87_RS19470 0.68 -1.1
738,424 + ABZR87_RS19470 0.68 -0.4
738,424 + ABZR87_RS19470 0.68 -1.4
738,425 - ABZR87_RS19470 0.68 +0.1
738,425 - ABZR87_RS19470 0.68 +0.1
738,425 - ABZR87_RS19470 0.68 +0.3
738,425 - ABZR87_RS19470 0.68 -1.6
738,553 + ABZR87_RS19470 0.81 -1.3
738,583 + ABZR87_RS19470 0.84 -0.1
738,625 + ABZR87_RS19470 0.88 -0.1
738,625 + ABZR87_RS19470 0.88 -0.8
738,626 - ABZR87_RS19470 0.88 -1.6
738,626 - ABZR87_RS19470 0.88 -0.4
738,626 - ABZR87_RS19470 0.88 +0.2
738,626 - ABZR87_RS19470 0.88 -1.0
738,821 + -0.1
738,821 + -0.9
738,821 + +1.8
738,821 + -0.3
738,821 + +0.9
738,822 - +0.0
739,144 + ABZR87_RS19475 0.25 -0.2
739,192 + ABZR87_RS19475 0.28 -1.3
739,193 - ABZR87_RS19475 0.28 -0.7
739,238 + ABZR87_RS19475 0.31 +0.3
739,239 - ABZR87_RS19475 0.32 +0.9
739,392 + ABZR87_RS19475 0.42 +0.1
739,393 - ABZR87_RS19475 0.42 -0.6
739,518 + ABZR87_RS19475 0.51 -3.3
739,620 + ABZR87_RS19475 0.58 -1.4
739,620 + ABZR87_RS19475 0.58 -0.1
739,620 + ABZR87_RS19475 0.58 +0.1
739,753 - ABZR87_RS19475 0.68 -0.0
739,754 + ABZR87_RS19475 0.68 -0.9
739,754 + ABZR87_RS19475 0.68 -1.1
739,754 + ABZR87_RS19475 0.68 -1.6
739,754 + ABZR87_RS19475 0.68 -0.4
739,755 - ABZR87_RS19475 0.68 -1.0
739,755 - ABZR87_RS19475 0.68 +0.9
739,755 - ABZR87_RS19475 0.68 -0.4
739,869 + ABZR87_RS19475 0.76 +0.1
739,870 - ABZR87_RS19475 0.76 +1.1
739,908 + ABZR87_RS19475 0.78 -0.9
739,909 - ABZR87_RS19475 0.78 -0.8
739,909 - ABZR87_RS19475 0.78 +0.3
739,909 - ABZR87_RS19475 0.78 +0.5
739,983 - ABZR87_RS19475 0.84 -1.8
740,237 + -1.4
740,261 + -0.7
740,261 + -1.1
740,261 + -0.2
740,261 + +0.4
740,262 - +0.6
740,262 - -1.2
740,298 + -0.6
740,318 + -0.9
740,319 - +0.6
740,561 + ABZR87_RS19480 0.11 -0.2
740,561 + ABZR87_RS19480 0.11 +0.1
740,561 + ABZR87_RS19480 0.11 +0.6
740,562 - ABZR87_RS19480 0.11 +0.1
740,657 + ABZR87_RS19480 0.17 +0.7
740,658 - ABZR87_RS19480 0.17 +0.1
740,813 + ABZR87_RS19480 0.27 -0.3
740,861 + ABZR87_RS19480 0.31 -0.2
740,861 + ABZR87_RS19480 0.31 -0.6
740,862 - ABZR87_RS19480 0.31 +2.4
740,862 - ABZR87_RS19480 0.31 -0.3
740,862 - ABZR87_RS19480 0.31 +0.3
740,862 - ABZR87_RS19480 0.31 +0.1
740,870 + ABZR87_RS19480 0.31 -0.0
740,871 - ABZR87_RS19480 0.31 +0.4
740,871 - ABZR87_RS19480 0.31 -1.5
740,873 + ABZR87_RS19480 0.31 -2.0
740,873 + ABZR87_RS19480 0.31 +0.0
740,874 - ABZR87_RS19480 0.31 -0.1
740,909 + ABZR87_RS19480 0.34 +0.7
740,909 + ABZR87_RS19480 0.34 -0.5
740,909 + ABZR87_RS19480 0.34 +0.4
740,910 - ABZR87_RS19480 0.34 -0.6
740,910 - ABZR87_RS19480 0.34 -0.1
740,910 - ABZR87_RS19480 0.34 -1.2
740,912 - ABZR87_RS19480 0.34 -1.1
740,912 - ABZR87_RS19480 0.34 -0.7
740,912 - ABZR87_RS19480 0.34 +0.1

Or see this region's nucleotide sequence