Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19265 and ABZR87_RS19270 are separated by 307 nucleotides ABZR87_RS19270 and ABZR87_RS19275 are separated by 43 nucleotides ABZR87_RS19275 and ABZR87_RS19280 are separated by 79 nucleotides
ABZR87_RS19265: ABZR87_RS19265 - LuxR family transcriptional regulator, at 683,575 to 684,423
_RS19265
ABZR87_RS19270: ABZR87_RS19270 - FHIPEP family type III secretion protein, at 684,731 to 686,686
_RS19270
ABZR87_RS19275: ABZR87_RS19275 - type III secretion system export apparatus subunit SctS, at 686,730 to 687,005
_RS19275
ABZR87_RS19280: ABZR87_RS19280 - type III secretion system outer membrane ring subunit SctC, at 687,085 to 688,956
_RS19280
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -2
-1
0
1 at 683.837 kb on + strand, within ABZR87_RS19265 at 684.104 kb on + strand, within ABZR87_RS19265 at 684.105 kb on - strand, within ABZR87_RS19265 at 684.119 kb on + strand, within ABZR87_RS19265 at 684.147 kb on - strand, within ABZR87_RS19265 at 684.175 kb on - strand, within ABZR87_RS19265 at 684.203 kb on + strand, within ABZR87_RS19265 at 684.203 kb on + strand, within ABZR87_RS19265 at 684.461 kb on + strand at 684.489 kb on - strand at 684.578 kb on + strand at 684.578 kb on + strand at 684.623 kb on + strand at 684.755 kb on + strand at 684.756 kb on - strand at 684.756 kb on - strand at 684.874 kb on - strand at 684.880 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 684.888 kb on - strand at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.824 kb on + strand, within ABZR87_RS19270 at 685.825 kb on - strand, within ABZR87_RS19270 at 685.825 kb on - strand, within ABZR87_RS19270 at 686.059 kb on + strand, within ABZR87_RS19270 at 686.574 kb on - strand at 686.624 kb on + strand at 686.982 kb on + strand at 686.983 kb on - strand at 687.045 kb on + strand at 687.046 kb on - strand at 687.046 kb on - strand at 687.046 kb on - strand at 687.175 kb on + strand at 687.175 kb on + strand at 687.176 kb on - strand at 687.334 kb on + strand, within ABZR87_RS19280 at 687.335 kb on - strand, within ABZR87_RS19280 at 687.349 kb on + strand, within ABZR87_RS19280 at 687.349 kb on + strand, within ABZR87_RS19280 at 687.349 kb on + strand, within ABZR87_RS19280 at 687.352 kb on + strand, within ABZR87_RS19280 at 687.352 kb on + strand, within ABZR87_RS19280 at 687.371 kb on - strand, within ABZR87_RS19280 at 687.515 kb on - strand, within ABZR87_RS19280 at 687.535 kb on + strand, within ABZR87_RS19280 at 687.536 kb on - strand, within ABZR87_RS19280 at 687.536 kb on - strand, within ABZR87_RS19280 at 687.625 kb on + strand, within ABZR87_RS19280 at 687.625 kb on + strand, within ABZR87_RS19280 at 687.626 kb on - strand, within ABZR87_RS19280 at 687.626 kb on - strand, within ABZR87_RS19280 at 687.626 kb on - strand, within ABZR87_RS19280
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 683,837 + ABZR87_RS19265 0.31 +0.4 684,104 + ABZR87_RS19265 0.62 -0.6 684,105 - ABZR87_RS19265 0.62 +1.3 684,119 + ABZR87_RS19265 0.64 -0.0 684,147 - ABZR87_RS19265 0.67 +0.2 684,175 - ABZR87_RS19265 0.71 +0.1 684,203 + ABZR87_RS19265 0.74 +0.9 684,203 + ABZR87_RS19265 0.74 +0.5 684,461 + +0.8 684,489 - -0.5 684,578 + +0.7 684,578 + +0.9 684,623 + +0.5 684,755 + +0.5 684,756 - +0.6 684,756 - -0.2 684,874 - +0.1 684,880 - -1.0 684,888 - -0.0 684,888 - -0.4 684,888 - -2.1 684,888 - -0.0 684,888 - -0.6 685,824 + ABZR87_RS19270 0.56 -0.9 685,824 + ABZR87_RS19270 0.56 -0.3 685,824 + ABZR87_RS19270 0.56 -1.0 685,824 + ABZR87_RS19270 0.56 -0.0 685,824 + ABZR87_RS19270 0.56 -0.9 685,825 - ABZR87_RS19270 0.56 +0.6 685,825 - ABZR87_RS19270 0.56 +0.1 686,059 + ABZR87_RS19270 0.68 -0.2 686,574 - +0.9 686,624 + +0.8 686,982 + -0.2 686,983 - -0.6 687,045 + -0.3 687,046 - +0.5 687,046 - +0.1 687,046 - +0.2 687,175 + +0.7 687,175 + -0.4 687,176 - -0.2 687,334 + ABZR87_RS19280 0.13 +0.6 687,335 - ABZR87_RS19280 0.13 +1.0 687,349 + ABZR87_RS19280 0.14 -0.9 687,349 + ABZR87_RS19280 0.14 -1.1 687,349 + ABZR87_RS19280 0.14 -0.4 687,352 + ABZR87_RS19280 0.14 +0.6 687,352 + ABZR87_RS19280 0.14 +0.5 687,371 - ABZR87_RS19280 0.15 +0.9 687,515 - ABZR87_RS19280 0.23 -1.6 687,535 + ABZR87_RS19280 0.24 +1.4 687,536 - ABZR87_RS19280 0.24 +0.4 687,536 - ABZR87_RS19280 0.24 -1.9 687,625 + ABZR87_RS19280 0.29 +0.5 687,625 + ABZR87_RS19280 0.29 -0.2 687,626 - ABZR87_RS19280 0.29 -1.3 687,626 - ABZR87_RS19280 0.29 +0.6 687,626 - ABZR87_RS19280 0.29 -0.5
Or see this region's nucleotide sequence