Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13710

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13700 and ABZR87_RS13705 are separated by 71 nucleotidesABZR87_RS13705 and ABZR87_RS13710 are separated by 78 nucleotidesABZR87_RS13710 and ABZR87_RS13715 are separated by 64 nucleotides ABZR87_RS13700: ABZR87_RS13700 - MerR family transcriptional regulator, at 2,890,793 to 2,891,224 _RS13700 ABZR87_RS13705: ABZR87_RS13705 - integration host factor subunit alpha, at 2,891,296 to 2,891,712 _RS13705 ABZR87_RS13710: ABZR87_RS13710 - phenylalanine--tRNA ligase subunit beta, at 2,891,791 to 2,894,220 _RS13710 ABZR87_RS13715: ABZR87_RS13715 - phenylalanine--tRNA ligase subunit alpha, at 2,894,285 to 2,895,319 _RS13715 Position (kb) 2891 2892 2893 2894 2895Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2890.794 kb on + strandat 2890.794 kb on + strandat 2890.795 kb on - strandat 2890.795 kb on - strandat 2891.001 kb on + strand, within ABZR87_RS13700at 2891.002 kb on - strand, within ABZR87_RS13700at 2891.017 kb on + strand, within ABZR87_RS13700at 2891.017 kb on + strand, within ABZR87_RS13700at 2891.017 kb on + strand, within ABZR87_RS13700at 2891.049 kb on + strand, within ABZR87_RS13700at 2891.049 kb on + strand, within ABZR87_RS13700at 2891.050 kb on - strand, within ABZR87_RS13700at 2891.050 kb on - strand, within ABZR87_RS13700at 2891.050 kb on - strand, within ABZR87_RS13700at 2891.050 kb on - strand, within ABZR87_RS13700at 2891.050 kb on - strand, within ABZR87_RS13700at 2891.050 kb on - strand, within ABZR87_RS13700at 2891.052 kb on + strand, within ABZR87_RS13700at 2891.053 kb on - strand, within ABZR87_RS13700at 2891.092 kb on + strand, within ABZR87_RS13700at 2891.138 kb on + strand, within ABZR87_RS13700at 2891.138 kb on + strand, within ABZR87_RS13700at 2891.138 kb on + strand, within ABZR87_RS13700at 2891.138 kb on + strand, within ABZR87_RS13700at 2891.138 kb on + strand, within ABZR87_RS13700at 2891.139 kb on - strand, within ABZR87_RS13700at 2891.166 kb on + strand, within ABZR87_RS13700at 2891.224 kb on + strandat 2891.238 kb on - strandat 2891.297 kb on + strandat 2891.298 kb on - strandat 2891.298 kb on - strandat 2891.457 kb on + strand, within ABZR87_RS13705at 2891.533 kb on - strand, within ABZR87_RS13705at 2891.533 kb on - strand, within ABZR87_RS13705at 2891.724 kb on - strandat 2891.728 kb on + strandat 2891.728 kb on + strandat 2891.729 kb on - strandat 2894.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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2,890,794 + +0.7
2,890,794 + -0.0
2,890,795 - -1.0
2,890,795 - +0.3
2,891,001 + ABZR87_RS13700 0.48 -0.4
2,891,002 - ABZR87_RS13700 0.48 +0.8
2,891,017 + ABZR87_RS13700 0.52 -0.7
2,891,017 + ABZR87_RS13700 0.52 -0.6
2,891,017 + ABZR87_RS13700 0.52 +0.2
2,891,049 + ABZR87_RS13700 0.59 -0.2
2,891,049 + ABZR87_RS13700 0.59 -0.8
2,891,050 - ABZR87_RS13700 0.59 -0.4
2,891,050 - ABZR87_RS13700 0.59 +0.5
2,891,050 - ABZR87_RS13700 0.59 -0.5
2,891,050 - ABZR87_RS13700 0.59 +0.2
2,891,050 - ABZR87_RS13700 0.59 +0.4
2,891,050 - ABZR87_RS13700 0.59 -0.6
2,891,052 + ABZR87_RS13700 0.60 -0.1
2,891,053 - ABZR87_RS13700 0.60 +0.2
2,891,092 + ABZR87_RS13700 0.69 +0.3
2,891,138 + ABZR87_RS13700 0.80 -0.6
2,891,138 + ABZR87_RS13700 0.80 +0.8
2,891,138 + ABZR87_RS13700 0.80 +0.4
2,891,138 + ABZR87_RS13700 0.80 -3.1
2,891,138 + ABZR87_RS13700 0.80 -0.7
2,891,139 - ABZR87_RS13700 0.80 +0.4
2,891,166 + ABZR87_RS13700 0.86 +0.7
2,891,224 + +0.3
2,891,238 - -2.1
2,891,297 + +0.7
2,891,298 - -0.9
2,891,298 - +1.3
2,891,457 + ABZR87_RS13705 0.39 +3.6
2,891,533 - ABZR87_RS13705 0.57 -0.0
2,891,533 - ABZR87_RS13705 0.57 +0.1
2,891,724 - +0.2
2,891,728 + +0.3
2,891,728 + -2.2
2,891,729 - +0.8
2,894,287 - -1.5

Or see this region's nucleotide sequence