Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11795

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11790 and ABZR87_RS11795 are separated by 10 nucleotidesABZR87_RS11795 and ABZR87_RS11800 overlap by 4 nucleotidesABZR87_RS11800 and ABZR87_RS11805 are separated by 68 nucleotides ABZR87_RS11790: ABZR87_RS11790 - cell division protein ZipA C-terminal FtsZ-binding domain-containing protein, at 2,500,687 to 2,501,901 _RS11790 ABZR87_RS11795: ABZR87_RS11795 - NAD-dependent DNA ligase LigA, at 2,501,912 to 2,504,353 _RS11795 ABZR87_RS11800: ABZR87_RS11800 - peptide deformylase, at 2,504,350 to 2,504,883 _RS11800 ABZR87_RS11805: ABZR87_RS11805 - alpha/beta fold hydrolase, at 2,504,952 to 2,506,073 _RS11805 Position (kb) 2501 2502 2503 2504 2505Strain fitness (log2 ratio) -2 -1 0 1 2at 2501.251 kb on + strand, within ABZR87_RS11790at 2501.441 kb on + strand, within ABZR87_RS11790at 2501.442 kb on - strand, within ABZR87_RS11790at 2501.491 kb on + strand, within ABZR87_RS11790at 2501.731 kb on + strand, within ABZR87_RS11790at 2501.833 kb on + strandat 2504.683 kb on + strand, within ABZR87_RS11800at 2504.684 kb on - strand, within ABZR87_RS11800at 2504.684 kb on - strand, within ABZR87_RS11800at 2504.699 kb on - strand, within ABZR87_RS11800at 2504.699 kb on - strand, within ABZR87_RS11800at 2504.699 kb on - strand, within ABZR87_RS11800at 2504.736 kb on + strand, within ABZR87_RS11800at 2504.736 kb on + strand, within ABZR87_RS11800at 2504.736 kb on + strand, within ABZR87_RS11800at 2504.737 kb on - strand, within ABZR87_RS11800at 2504.921 kb on - strandat 2504.952 kb on - strandat 2504.952 kb on - strandat 2505.119 kb on + strand, within ABZR87_RS11805at 2505.136 kb on - strand, within ABZR87_RS11805at 2505.150 kb on + strand, within ABZR87_RS11805at 2505.151 kb on - strand, within ABZR87_RS11805at 2505.241 kb on - strand, within ABZR87_RS11805at 2505.241 kb on - strand, within ABZR87_RS11805at 2505.241 kb on - strand, within ABZR87_RS11805at 2505.241 kb on - strand, within ABZR87_RS11805at 2505.241 kb on - strand, within ABZR87_RS11805

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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2,501,251 + ABZR87_RS11790 0.46 +1.2
2,501,441 + ABZR87_RS11790 0.62 +0.7
2,501,442 - ABZR87_RS11790 0.62 +1.8
2,501,491 + ABZR87_RS11790 0.66 +0.4
2,501,731 + ABZR87_RS11790 0.86 +0.5
2,501,833 + -1.5
2,504,683 + ABZR87_RS11800 0.62 +0.0
2,504,684 - ABZR87_RS11800 0.63 -0.3
2,504,684 - ABZR87_RS11800 0.63 +1.1
2,504,699 - ABZR87_RS11800 0.65 +1.1
2,504,699 - ABZR87_RS11800 0.65 +0.2
2,504,699 - ABZR87_RS11800 0.65 -1.3
2,504,736 + ABZR87_RS11800 0.72 +0.5
2,504,736 + ABZR87_RS11800 0.72 +0.7
2,504,736 + ABZR87_RS11800 0.72 -0.6
2,504,737 - ABZR87_RS11800 0.72 +0.3
2,504,921 - +0.3
2,504,952 - -0.2
2,504,952 - -0.6
2,505,119 + ABZR87_RS11805 0.15 +2.5
2,505,136 - ABZR87_RS11805 0.16 -1.9
2,505,150 + ABZR87_RS11805 0.18 -0.1
2,505,151 - ABZR87_RS11805 0.18 -0.4
2,505,241 - ABZR87_RS11805 0.26 -0.9
2,505,241 - ABZR87_RS11805 0.26 +0.7
2,505,241 - ABZR87_RS11805 0.26 -1.2
2,505,241 - ABZR87_RS11805 0.26 -0.7
2,505,241 - ABZR87_RS11805 0.26 +0.4

Or see this region's nucleotide sequence