Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11405

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11400 and ABZR87_RS11405 are separated by 22 nucleotidesABZR87_RS11405 and ABZR87_RS11410 are separated by 16 nucleotidesABZR87_RS11410 and ABZR87_RS11415 overlap by 4 nucleotides ABZR87_RS11400: ABZR87_RS11400 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 2,416,450 to 2,417,343 _RS11400 ABZR87_RS11405: ABZR87_RS11405 - bifunctional UDP-4-keto-pentose/UDP-xylose synthase, at 2,417,366 to 2,418,424 _RS11405 ABZR87_RS11410: ABZR87_RS11410 - formyltransferase, at 2,418,441 to 2,419,382 _RS11410 ABZR87_RS11415: ABZR87_RS11415 - glycosyltransferase, at 2,419,379 to 2,420,374 _RS11415 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -1 0 1 2at 2417.367 kb on - strandat 2417.368 kb on - strandat 2417.368 kb on - strandat 2417.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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2,417,367 - +1.0
2,417,368 - +0.8
2,417,368 - +0.5
2,417,368 - +2.1

Or see this region's nucleotide sequence