Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11200

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11195 and ABZR87_RS11200 are separated by 207 nucleotidesABZR87_RS11200 and ABZR87_RS11205 overlap by 4 nucleotides ABZR87_RS11195: ABZR87_RS11195 - pseudouridine synthase, at 2,374,494 to 2,376,275 _RS11195 ABZR87_RS11200: ABZR87_RS11200 - ribosome maturation factor RimP, at 2,376,483 to 2,376,971 _RS11200 ABZR87_RS11205: ABZR87_RS11205 - transcription termination factor NusA, at 2,376,968 to 2,378,443 _RS11205 Position (kb) 2376 2377Strain fitness (log2 ratio) -1 0 1 2 3at 2375.514 kb on + strand, within ABZR87_RS11195at 2375.515 kb on - strand, within ABZR87_RS11195at 2375.532 kb on + strand, within ABZR87_RS11195at 2375.533 kb on - strand, within ABZR87_RS11195at 2375.543 kb on + strand, within ABZR87_RS11195at 2375.543 kb on + strand, within ABZR87_RS11195at 2375.544 kb on - strand, within ABZR87_RS11195at 2375.544 kb on - strand, within ABZR87_RS11195at 2375.544 kb on - strand, within ABZR87_RS11195at 2375.665 kb on - strand, within ABZR87_RS11195at 2375.708 kb on + strand, within ABZR87_RS11195at 2375.709 kb on - strand, within ABZR87_RS11195at 2375.709 kb on - strand, within ABZR87_RS11195at 2375.709 kb on - strand, within ABZR87_RS11195at 2375.709 kb on - strand, within ABZR87_RS11195at 2375.709 kb on - strand, within ABZR87_RS11195at 2375.709 kb on - strand, within ABZR87_RS11195at 2375.751 kb on - strand, within ABZR87_RS11195at 2375.829 kb on - strand, within ABZR87_RS11195at 2375.829 kb on - strand, within ABZR87_RS11195at 2375.981 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.365 kb on + strandat 2376.576 kb on + strand, within ABZR87_RS11200

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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2,375,514 + ABZR87_RS11195 0.57 +1.0
2,375,515 - ABZR87_RS11195 0.57 +0.4
2,375,532 + ABZR87_RS11195 0.58 +0.2
2,375,533 - ABZR87_RS11195 0.58 +2.6
2,375,543 + ABZR87_RS11195 0.59 -0.7
2,375,543 + ABZR87_RS11195 0.59 +2.4
2,375,544 - ABZR87_RS11195 0.59 +1.5
2,375,544 - ABZR87_RS11195 0.59 +1.0
2,375,544 - ABZR87_RS11195 0.59 +0.8
2,375,665 - ABZR87_RS11195 0.66 +2.1
2,375,708 + ABZR87_RS11195 0.68 +2.1
2,375,709 - ABZR87_RS11195 0.68 +2.7
2,375,709 - ABZR87_RS11195 0.68 +1.6
2,375,709 - ABZR87_RS11195 0.68 +0.7
2,375,709 - ABZR87_RS11195 0.68 +0.9
2,375,709 - ABZR87_RS11195 0.68 +1.8
2,375,709 - ABZR87_RS11195 0.68 +2.9
2,375,751 - ABZR87_RS11195 0.71 +2.4
2,375,829 - ABZR87_RS11195 0.75 +1.2
2,375,829 - ABZR87_RS11195 0.75 +0.8
2,375,981 + ABZR87_RS11195 0.83 +0.7
2,376,072 + ABZR87_RS11195 0.89 -0.2
2,376,072 + ABZR87_RS11195 0.89 +0.4
2,376,072 + ABZR87_RS11195 0.89 +0.5
2,376,072 + ABZR87_RS11195 0.89 -0.6
2,376,072 + ABZR87_RS11195 0.89 +0.9
2,376,072 + ABZR87_RS11195 0.89 +0.3
2,376,073 - ABZR87_RS11195 0.89 +1.1
2,376,073 - ABZR87_RS11195 0.89 +1.0
2,376,073 - ABZR87_RS11195 0.89 +1.3
2,376,073 - ABZR87_RS11195 0.89 +1.5
2,376,365 + +0.6
2,376,576 + ABZR87_RS11200 0.19 -0.6

Or see this region's nucleotide sequence