Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10740

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10735 and ABZR87_RS10740 are separated by 183 nucleotidesABZR87_RS10740 and ABZR87_RS10745 are separated by 203 nucleotidesABZR87_RS10745 and ABZR87_RS10750 overlap by 4 nucleotides ABZR87_RS10735: ABZR87_RS10735 - glycosyltransferase family 39 protein, at 2,271,041 to 2,272,831 _RS10735 ABZR87_RS10740: ABZR87_RS10740 - type B 50S ribosomal protein L31, at 2,273,015 to 2,273,275 _RS10740 ABZR87_RS10745: ABZR87_RS10745 - hypothetical protein, at 2,273,479 to 2,274,036 _RS10745 ABZR87_RS10750: ABZR87_RS10750 - zinc-dependent peptidase, at 2,274,033 to 2,274,899 _RS10750 Position (kb) 2273 2274Strain fitness (log2 ratio) -1 0 1at 2272.886 kb on - strandat 2272.886 kb on - strandat 2272.886 kb on - strandat 2272.909 kb on + strandat 2272.909 kb on + strandat 2272.909 kb on + strandat 2272.909 kb on + strandat 2272.909 kb on + strandat 2272.909 kb on + strandat 2272.910 kb on - strandat 2272.910 kb on - strandat 2272.910 kb on - strandat 2272.910 kb on - strandat 2272.910 kb on - strandat 2272.910 kb on - strandat 2272.962 kb on + strandat 2272.962 kb on + strandat 2272.962 kb on + strandat 2272.963 kb on - strandat 2272.963 kb on - strandat 2273.013 kb on + strandat 2273.013 kb on + strandat 2273.016 kb on + strandat 2273.016 kb on + strandat 2273.461 kb on + strandat 2273.461 kb on + strandat 2273.583 kb on + strand, within ABZR87_RS10745at 2273.583 kb on + strand, within ABZR87_RS10745at 2273.583 kb on + strand, within ABZR87_RS10745at 2273.725 kb on + strand, within ABZR87_RS10745at 2273.725 kb on + strand, within ABZR87_RS10745at 2273.725 kb on + strand, within ABZR87_RS10745at 2273.725 kb on + strand, within ABZR87_RS10745at 2273.725 kb on + strand, within ABZR87_RS10745at 2273.726 kb on - strand, within ABZR87_RS10745at 2273.726 kb on - strand, within ABZR87_RS10745at 2273.828 kb on - strand, within ABZR87_RS10745at 2273.828 kb on - strand, within ABZR87_RS10745at 2273.834 kb on + strand, within ABZR87_RS10745at 2273.834 kb on + strand, within ABZR87_RS10745at 2273.835 kb on - strand, within ABZR87_RS10745at 2273.835 kb on - strand, within ABZR87_RS10745at 2273.835 kb on - strand, within ABZR87_RS10745at 2273.835 kb on - strand, within ABZR87_RS10745at 2273.835 kb on - strand, within ABZR87_RS10745at 2273.838 kb on + strand, within ABZR87_RS10745at 2273.838 kb on + strand, within ABZR87_RS10745at 2273.838 kb on + strand, within ABZR87_RS10745at 2273.838 kb on + strand, within ABZR87_RS10745at 2273.838 kb on + strand, within ABZR87_RS10745at 2273.839 kb on - strand, within ABZR87_RS10745at 2273.839 kb on - strand, within ABZR87_RS10745at 2273.839 kb on - strand, within ABZR87_RS10745at 2273.839 kb on - strand, within ABZR87_RS10745at 2273.839 kb on - strand, within ABZR87_RS10745at 2273.839 kb on - strand, within ABZR87_RS10745at 2273.844 kb on + strand, within ABZR87_RS10745at 2273.844 kb on + strand, within ABZR87_RS10745at 2273.845 kb on - strand, within ABZR87_RS10745at 2273.845 kb on - strand, within ABZR87_RS10745at 2273.845 kb on - strand, within ABZR87_RS10745at 2273.997 kb on + strandat 2274.097 kb on + strandat 2274.097 kb on + strandat 2274.097 kb on + strandat 2274.118 kb on + strandat 2274.118 kb on + strandat 2274.119 kb on - strandat 2274.212 kb on - strand, within ABZR87_RS10750at 2274.212 kb on - strand, within ABZR87_RS10750

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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2,272,886 - -0.3
2,272,886 - -0.4
2,272,886 - +0.5
2,272,909 + -0.1
2,272,909 + -1.4
2,272,909 + -1.1
2,272,909 + -0.1
2,272,909 + +0.2
2,272,909 + +0.5
2,272,910 - -0.4
2,272,910 - +0.2
2,272,910 - +0.9
2,272,910 - +0.0
2,272,910 - +0.3
2,272,910 - -1.5
2,272,962 + +1.6
2,272,962 + -0.5
2,272,962 + -0.3
2,272,963 - +0.2
2,272,963 - -0.3
2,273,013 + +0.6
2,273,013 + -0.1
2,273,016 + +0.2
2,273,016 + +0.1
2,273,461 + +1.4
2,273,461 + -1.5
2,273,583 + ABZR87_RS10745 0.19 +0.1
2,273,583 + ABZR87_RS10745 0.19 +0.8
2,273,583 + ABZR87_RS10745 0.19 +0.1
2,273,725 + ABZR87_RS10745 0.44 -0.7
2,273,725 + ABZR87_RS10745 0.44 +0.1
2,273,725 + ABZR87_RS10745 0.44 +0.5
2,273,725 + ABZR87_RS10745 0.44 +0.2
2,273,725 + ABZR87_RS10745 0.44 -0.1
2,273,726 - ABZR87_RS10745 0.44 +0.5
2,273,726 - ABZR87_RS10745 0.44 +0.3
2,273,828 - ABZR87_RS10745 0.63 +0.6
2,273,828 - ABZR87_RS10745 0.63 +1.2
2,273,834 + ABZR87_RS10745 0.64 -0.2
2,273,834 + ABZR87_RS10745 0.64 -0.2
2,273,835 - ABZR87_RS10745 0.64 +0.5
2,273,835 - ABZR87_RS10745 0.64 -1.1
2,273,835 - ABZR87_RS10745 0.64 -0.6
2,273,835 - ABZR87_RS10745 0.64 -0.3
2,273,835 - ABZR87_RS10745 0.64 -0.6
2,273,838 + ABZR87_RS10745 0.64 +0.2
2,273,838 + ABZR87_RS10745 0.64 +0.6
2,273,838 + ABZR87_RS10745 0.64 -0.8
2,273,838 + ABZR87_RS10745 0.64 -0.6
2,273,838 + ABZR87_RS10745 0.64 -0.7
2,273,839 - ABZR87_RS10745 0.65 +0.6
2,273,839 - ABZR87_RS10745 0.65 -0.6
2,273,839 - ABZR87_RS10745 0.65 +0.4
2,273,839 - ABZR87_RS10745 0.65 -0.9
2,273,839 - ABZR87_RS10745 0.65 +1.0
2,273,839 - ABZR87_RS10745 0.65 +0.5
2,273,844 + ABZR87_RS10745 0.65 -0.4
2,273,844 + ABZR87_RS10745 0.65 -0.5
2,273,845 - ABZR87_RS10745 0.66 -1.0
2,273,845 - ABZR87_RS10745 0.66 +0.4
2,273,845 - ABZR87_RS10745 0.66 +0.5
2,273,997 + +0.6
2,274,097 + -0.6
2,274,097 + +0.6
2,274,097 + +0.1
2,274,118 + -0.3
2,274,118 + -0.1
2,274,119 - -0.4
2,274,212 - ABZR87_RS10750 0.21 -0.0
2,274,212 - ABZR87_RS10750 0.21 -1.1

Or see this region's nucleotide sequence