Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09255

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09240 and ABZR87_RS09245 are separated by 88 nucleotidesABZR87_RS09245 and ABZR87_RS09250 are separated by 16 nucleotidesABZR87_RS09250 and ABZR87_RS09255 are separated by 44 nucleotidesABZR87_RS09255 and ABZR87_RS09260 are separated by 62 nucleotides ABZR87_RS09240: ABZR87_RS09240 - MAPEG family protein, at 1,955,417 to 1,955,800 _RS09240 ABZR87_RS09245: ABZR87_RS09245 - RNA-binding S4 domain-containing protein, at 1,955,889 to 1,956,110 _RS09245 ABZR87_RS09250: ABZR87_RS09250 - YceI family protein, at 1,956,127 to 1,956,690 _RS09250 ABZR87_RS09255: ABZR87_RS09255 - glutamine--tRNA ligase/YqeY domain fusion protein, at 1,956,735 to 1,958,486 _RS09255 ABZR87_RS09260: ABZR87_RS09260 - lipase secretion chaperone, at 1,958,549 to 1,959,568 _RS09260 Position (kb) 1956 1957 1958 1959Strain fitness (log2 ratio) -1 0 1 2 3at 1955.844 kb on + strandat 1956.128 kb on + strandat 1956.129 kb on - strandat 1956.599 kb on + strand, within ABZR87_RS09250at 1956.673 kb on + strandat 1956.674 kb on - strandat 1956.674 kb on - strandat 1956.736 kb on + strandat 1956.736 kb on + strandat 1956.736 kb on + strandat 1956.737 kb on - strandat 1956.737 kb on - strandat 1956.737 kb on - strandat 1956.737 kb on - strandat 1956.737 kb on - strandat 1956.737 kb on - strandat 1956.737 kb on - strandat 1958.550 kb on + strandat 1958.551 kb on - strandat 1958.551 kb on - strandat 1958.551 kb on - strandat 1958.700 kb on + strand, within ABZR87_RS09260at 1958.701 kb on - strand, within ABZR87_RS09260at 1958.892 kb on - strand, within ABZR87_RS09260at 1959.019 kb on - strand, within ABZR87_RS09260at 1959.048 kb on + strand, within ABZR87_RS09260at 1959.048 kb on + strand, within ABZR87_RS09260at 1959.049 kb on - strand, within ABZR87_RS09260at 1959.049 kb on - strand, within ABZR87_RS09260at 1959.049 kb on - strand, within ABZR87_RS09260at 1959.189 kb on + strand, within ABZR87_RS09260at 1959.189 kb on + strand, within ABZR87_RS09260at 1959.190 kb on - strand, within ABZR87_RS09260at 1959.190 kb on - strand, within ABZR87_RS09260at 1959.309 kb on + strand, within ABZR87_RS09260at 1959.310 kb on - strand, within ABZR87_RS09260at 1959.359 kb on - strand, within ABZR87_RS09260

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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1,955,844 + -0.6
1,956,128 + -0.5
1,956,129 - -0.8
1,956,599 + ABZR87_RS09250 0.84 +0.4
1,956,673 + +0.4
1,956,674 - +0.2
1,956,674 - -1.4
1,956,736 + +0.4
1,956,736 + +0.7
1,956,736 + +1.8
1,956,737 - -0.2
1,956,737 - +3.3
1,956,737 - -0.7
1,956,737 - +0.2
1,956,737 - +0.2
1,956,737 - -0.3
1,956,737 - +1.2
1,958,550 + +0.3
1,958,551 - +0.5
1,958,551 - +0.1
1,958,551 - +0.7
1,958,700 + ABZR87_RS09260 0.15 -0.3
1,958,701 - ABZR87_RS09260 0.15 +1.8
1,958,892 - ABZR87_RS09260 0.34 -0.9
1,959,019 - ABZR87_RS09260 0.46 -0.1
1,959,048 + ABZR87_RS09260 0.49 +0.5
1,959,048 + ABZR87_RS09260 0.49 +0.8
1,959,049 - ABZR87_RS09260 0.49 -0.0
1,959,049 - ABZR87_RS09260 0.49 +0.3
1,959,049 - ABZR87_RS09260 0.49 +0.3
1,959,189 + ABZR87_RS09260 0.63 -0.2
1,959,189 + ABZR87_RS09260 0.63 +0.1
1,959,190 - ABZR87_RS09260 0.63 -0.8
1,959,190 - ABZR87_RS09260 0.63 -1.5
1,959,309 + ABZR87_RS09260 0.75 +0.8
1,959,310 - ABZR87_RS09260 0.75 -0.4
1,959,359 - ABZR87_RS09260 0.79 -0.2

Or see this region's nucleotide sequence