Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02825 and ABZR87_RS02830 are separated by 2 nucleotides ABZR87_RS02830 and ABZR87_RS02835 overlap by 4 nucleotides ABZR87_RS02835 and ABZR87_RS02840 are separated by 11 nucleotides ABZR87_RS02840 and ABZR87_RS02845 are separated by 284 nucleotides ABZR87_RS02845 and ABZR87_RS02850 are separated by 107 nucleotides
ABZR87_RS02825: ABZR87_RS02825 - 50S ribosomal protein L2, at 587,005 to 587,835
_RS02825
ABZR87_RS02830: ABZR87_RS02830 - 50S ribosomal protein L23, at 587,838 to 588,152
_RS02830
ABZR87_RS02835: ABZR87_RS02835 - 50S ribosomal protein L4, at 588,149 to 588,769
_RS02835
ABZR87_RS02840: ABZR87_RS02840 - 50S ribosomal protein L3, at 588,781 to 589,434
_RS02840
ABZR87_RS02845: ABZR87_RS02845 - 30S ribosomal protein S10, at 589,719 to 590,030
_RS02845
ABZR87_RS02850: ABZR87_RS02850 - elongation factor Tu, at 590,138 to 591,346
_RS02850
Position (kb) 588
589
590 Strain fitness (log2 ratio) -1
0
1 at 589.648 kb on + strand at 589.648 kb on + strand at 589.649 kb on - strand at 589.720 kb on + strand at 589.721 kb on - strand at 589.744 kb on - strand at 590.088 kb on - strand at 590.140 kb on - strand at 590.344 kb on - strand, within ABZR87_RS02850 at 590.344 kb on - strand, within ABZR87_RS02850 at 590.344 kb on - strand, within ABZR87_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 589,648 + +0.1 589,648 + +1.0 589,649 - +0.2 589,720 + +1.1 589,721 - -0.9 589,744 - +1.6 590,088 - -0.6 590,140 - -0.7 590,344 - ABZR87_RS02850 0.17 -0.2 590,344 - ABZR87_RS02850 0.17 +0.3 590,344 - ABZR87_RS02850 0.17 +1.0
Or see this region's nucleotide sequence