Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00155

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00150 and ABZR87_RS00155 are separated by 114 nucleotidesABZR87_RS00155 and ABZR87_RS00160 overlap by 4 nucleotides ABZR87_RS00150: ABZR87_RS00150 - leucyl aminopeptidase, at 29,439 to 30,947 _RS00150 ABZR87_RS00155: ABZR87_RS00155 - LPS export ABC transporter permease LptF, at 31,062 to 32,180 _RS00155 ABZR87_RS00160: ABZR87_RS00160 - LPS export ABC transporter permease LptG, at 32,177 to 33,373 _RS00160 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1at 30.169 kb on + strand, within ABZR87_RS00150at 30.169 kb on + strand, within ABZR87_RS00150at 30.319 kb on + strand, within ABZR87_RS00150at 30.320 kb on - strand, within ABZR87_RS00150at 30.320 kb on - strand, within ABZR87_RS00150at 30.521 kb on - strand, within ABZR87_RS00150at 30.985 kb on + strandat 30.985 kb on + strandat 30.985 kb on + strandat 30.986 kb on - strandat 30.988 kb on + strandat 32.112 kb on + strandat 32.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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30,169 + ABZR87_RS00150 0.48 -1.1
30,169 + ABZR87_RS00150 0.48 +0.9
30,319 + ABZR87_RS00150 0.58 +0.3
30,320 - ABZR87_RS00150 0.58 -0.6
30,320 - ABZR87_RS00150 0.58 +0.6
30,521 - ABZR87_RS00150 0.72 +0.2
30,985 + +1.0
30,985 + +0.8
30,985 + +0.2
30,986 - +0.3
30,988 + +0.8
32,112 + +0.3
32,112 + -0.2

Or see this region's nucleotide sequence