Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0305

Experiment: Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0304 and BT0305 are separated by 3 nucleotidesBT0305 and BT0306 overlap by 1 nucleotides BT0304: BT0304 - acriflavine resistance protein A precursor (NCBI ptt file), at 362,872 to 364,107 BT0304 BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215 BT0305 BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588 BT0306 Position (kb) 364 365 366 367 368Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 363.277 kb on - strand, within BT0304at 363.290 kb on - strand, within BT0304at 363.341 kb on - strand, within BT0304at 363.442 kb on - strand, within BT0304at 363.505 kb on - strand, within BT0304at 363.509 kb on + strand, within BT0304at 363.630 kb on - strand, within BT0304at 363.649 kb on - strand, within BT0304at 363.775 kb on - strand, within BT0304at 363.861 kb on + strand, within BT0304at 363.862 kb on - strand, within BT0304at 363.862 kb on - strand, within BT0304at 363.862 kb on - strand, within BT0304at 363.867 kb on + strand, within BT0304at 363.877 kb on - strand, within BT0304at 363.886 kb on - strand, within BT0304at 363.903 kb on + strand, within BT0304at 364.130 kb on + strandat 364.343 kb on - strandat 364.343 kb on - strandat 364.401 kb on - strandat 364.491 kb on + strand, within BT0305at 364.524 kb on - strand, within BT0305at 364.546 kb on - strand, within BT0305at 364.650 kb on + strand, within BT0305at 364.660 kb on + strand, within BT0305at 364.661 kb on - strand, within BT0305at 364.665 kb on + strand, within BT0305at 364.770 kb on - strand, within BT0305at 364.988 kb on - strand, within BT0305at 364.988 kb on - strand, within BT0305at 365.019 kb on - strand, within BT0305at 365.108 kb on - strand, within BT0305at 365.136 kb on + strand, within BT0305at 365.233 kb on - strand, within BT0305at 365.233 kb on - strand, within BT0305at 365.233 kb on - strand, within BT0305at 365.286 kb on + strand, within BT0305at 365.368 kb on - strand, within BT0305at 365.370 kb on + strand, within BT0305at 365.395 kb on + strand, within BT0305at 365.532 kb on + strand, within BT0305at 365.681 kb on - strand, within BT0305at 365.754 kb on + strand, within BT0305at 365.817 kb on + strand, within BT0305at 365.891 kb on - strand, within BT0305at 365.911 kb on - strand, within BT0305at 366.082 kb on + strand, within BT0305at 366.090 kb on + strand, within BT0305at 366.202 kb on + strand, within BT0305at 366.219 kb on + strand, within BT0305at 366.394 kb on + strand, within BT0305at 366.395 kb on - strand, within BT0305at 366.401 kb on + strand, within BT0305at 366.406 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.481 kb on - strand, within BT0305at 366.487 kb on - strand, within BT0305at 366.556 kb on - strand, within BT0305at 366.795 kb on - strand, within BT0305at 366.795 kb on - strand, within BT0305at 366.887 kb on + strand, within BT0305at 367.180 kb on - strandat 367.231 kb on + strandat 367.232 kb on - strandat 367.235 kb on + strandat 367.236 kb on - strandat 367.241 kb on + strandat 367.291 kb on - strandat 367.313 kb on - strandat 367.405 kb on + strand, within BT0306at 367.433 kb on + strand, within BT0306at 367.729 kb on - strand, within BT0306at 367.729 kb on - strand, within BT0306at 367.732 kb on - strand, within BT0306at 367.780 kb on + strand, within BT0306at 367.852 kb on - strand, within BT0306at 367.868 kb on - strand, within BT0306at 368.060 kb on - strand, within BT0306

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM
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363,277 - BT0304 0.33 -2.0
363,290 - BT0304 0.34 -1.0
363,341 - BT0304 0.38 -0.2
363,442 - BT0304 0.46 -1.6
363,505 - BT0304 0.51 -2.3
363,509 + BT0304 0.52 -1.6
363,630 - BT0304 0.61 +0.6
363,649 - BT0304 0.63 -0.0
363,775 - BT0304 0.73 -2.6
363,861 + BT0304 0.80 -1.0
363,862 - BT0304 0.80 +1.0
363,862 - BT0304 0.80 -0.7
363,862 - BT0304 0.80 +1.0
363,867 + BT0304 0.81 -2.5
363,877 - BT0304 0.81 -0.9
363,886 - BT0304 0.82 -1.2
363,903 + BT0304 0.83 -0.2
364,130 + -1.4
364,343 - -1.0
364,343 - -0.0
364,401 - -3.0
364,491 + BT0305 0.12 -1.2
364,524 - BT0305 0.13 -2.9
364,546 - BT0305 0.14 -0.7
364,650 + BT0305 0.17 -0.3
364,660 + BT0305 0.18 +0.4
364,661 - BT0305 0.18 -3.0
364,665 + BT0305 0.18 -0.9
364,770 - BT0305 0.21 -2.0
364,988 - BT0305 0.28 -0.0
364,988 - BT0305 0.28 +1.0
365,019 - BT0305 0.29 -0.3
365,108 - BT0305 0.32 -0.3
365,136 + BT0305 0.33 -0.5
365,233 - BT0305 0.36 -1.0
365,233 - BT0305 0.36 -2.6
365,233 - BT0305 0.36 -4.5
365,286 + BT0305 0.38 -0.0
365,368 - BT0305 0.40 -2.6
365,370 + BT0305 0.41 -0.3
365,395 + BT0305 0.41 -0.0
365,532 + BT0305 0.46 -0.0
365,681 - BT0305 0.51 -0.0
365,754 + BT0305 0.53 -1.0
365,817 + BT0305 0.55 +0.7
365,891 - BT0305 0.57 -1.0
365,911 - BT0305 0.58 -0.0
366,082 + BT0305 0.63 -1.0
366,090 + BT0305 0.64 +1.6
366,202 + BT0305 0.67 -0.0
366,219 + BT0305 0.68 +2.5
366,394 + BT0305 0.74 -0.6
366,395 - BT0305 0.74 +3.1
366,401 + BT0305 0.74 -0.0
366,406 - BT0305 0.74 -0.0
366,481 - BT0305 0.76 -2.3
366,481 - BT0305 0.76 +0.8
366,481 - BT0305 0.76 -1.2
366,481 - BT0305 0.76 -0.6
366,487 - BT0305 0.77 -0.1
366,556 - BT0305 0.79 -0.5
366,795 - BT0305 0.86 +1.0
366,795 - BT0305 0.86 -0.0
366,887 + BT0305 0.89 -0.0
367,180 - -0.2
367,231 + -1.0
367,232 - +3.0
367,235 + -2.0
367,236 - -0.5
367,241 + -0.0
367,291 - -0.0
367,313 - -2.0
367,405 + BT0306 0.14 -2.3
367,433 + BT0306 0.16 -2.0
367,729 - BT0306 0.37 +1.0
367,729 - BT0306 0.37 -0.0
367,732 - BT0306 0.38 -1.0
367,780 + BT0306 0.41 -0.4
367,852 - BT0306 0.46 -0.6
367,868 - BT0306 0.48 -1.0
368,060 - BT0306 0.61 -3.0

Or see this region's nucleotide sequence