Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004349

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004348 and ABIE53_004349 are separated by 120 nucleotidesABIE53_004349 and ABIE53_004350 are separated by 175 nucleotides ABIE53_004348: ABIE53_004348 - membrane dipeptidase, at 524,590 to 526,062 _004348 ABIE53_004349: ABIE53_004349 - putative porin, at 526,183 to 527,238 _004349 ABIE53_004350: ABIE53_004350 - 3-oxoacyl-[acyl-carrier-protein] synthase III, at 527,414 to 528,451 _004350 Position (kb) 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 525.338 kb on + strand, within ABIE53_004348at 525.339 kb on - strand, within ABIE53_004348at 525.340 kb on + strand, within ABIE53_004348at 525.340 kb on + strand, within ABIE53_004348at 525.340 kb on + strand, within ABIE53_004348at 525.341 kb on - strand, within ABIE53_004348at 525.605 kb on + strand, within ABIE53_004348at 525.605 kb on + strand, within ABIE53_004348at 525.911 kb on + strand, within ABIE53_004348at 525.911 kb on + strand, within ABIE53_004348at 525.911 kb on + strand, within ABIE53_004348at 525.986 kb on - strandat 526.063 kb on + strandat 526.064 kb on - strandat 526.155 kb on - strandat 526.155 kb on - strandat 526.307 kb on + strand, within ABIE53_004349at 526.308 kb on - strand, within ABIE53_004349at 526.309 kb on + strand, within ABIE53_004349at 526.582 kb on + strand, within ABIE53_004349at 526.582 kb on + strand, within ABIE53_004349at 526.583 kb on - strand, within ABIE53_004349at 526.583 kb on - strand, within ABIE53_004349at 526.645 kb on - strand, within ABIE53_004349at 526.645 kb on - strand, within ABIE53_004349at 526.666 kb on + strand, within ABIE53_004349at 526.667 kb on - strand, within ABIE53_004349at 526.668 kb on + strand, within ABIE53_004349at 526.668 kb on + strand, within ABIE53_004349at 526.669 kb on - strand, within ABIE53_004349at 526.669 kb on - strand, within ABIE53_004349at 526.687 kb on + strand, within ABIE53_004349at 526.688 kb on - strand, within ABIE53_004349at 526.774 kb on + strand, within ABIE53_004349at 526.876 kb on + strand, within ABIE53_004349at 526.877 kb on - strand, within ABIE53_004349at 526.900 kb on + strand, within ABIE53_004349at 527.074 kb on + strand, within ABIE53_004349at 527.101 kb on + strand, within ABIE53_004349at 527.102 kb on - strand, within ABIE53_004349at 527.185 kb on + strandat 527.314 kb on + strandat 527.315 kb on - strandat 527.319 kb on + strandat 527.320 kb on - strandat 527.529 kb on + strand, within ABIE53_004350at 527.529 kb on + strand, within ABIE53_004350at 527.530 kb on - strand, within ABIE53_004350at 527.530 kb on - strand, within ABIE53_004350at 527.530 kb on - strand, within ABIE53_004350at 527.681 kb on + strand, within ABIE53_004350at 527.682 kb on - strand, within ABIE53_004350at 527.851 kb on + strand, within ABIE53_004350at 527.851 kb on + strand, within ABIE53_004350at 527.852 kb on - strand, within ABIE53_004350at 527.852 kb on - strand, within ABIE53_004350at 527.876 kb on - strand, within ABIE53_004350at 527.940 kb on - strand, within ABIE53_004350at 527.956 kb on + strand, within ABIE53_004350at 528.042 kb on + strand, within ABIE53_004350at 528.226 kb on + strand, within ABIE53_004350at 528.227 kb on - strand, within ABIE53_004350at 528.227 kb on - strand, within ABIE53_004350at 528.227 kb on - strand, within ABIE53_004350

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
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525,338 + ABIE53_004348 0.51 -0.4
525,339 - ABIE53_004348 0.51 +2.2
525,340 + ABIE53_004348 0.51 -0.2
525,340 + ABIE53_004348 0.51 -0.1
525,340 + ABIE53_004348 0.51 -1.6
525,341 - ABIE53_004348 0.51 +3.8
525,605 + ABIE53_004348 0.69 -1.5
525,605 + ABIE53_004348 0.69 -1.4
525,911 + ABIE53_004348 0.90 +4.6
525,911 + ABIE53_004348 0.90 -1.8
525,911 + ABIE53_004348 0.90 +2.3
525,986 - -0.2
526,063 + -1.2
526,064 - -1.8
526,155 - -1.4
526,155 - +0.8
526,307 + ABIE53_004349 0.12 -1.5
526,308 - ABIE53_004349 0.12 +0.5
526,309 + ABIE53_004349 0.12 -2.0
526,582 + ABIE53_004349 0.38 +0.5
526,582 + ABIE53_004349 0.38 -3.2
526,583 - ABIE53_004349 0.38 -0.5
526,583 - ABIE53_004349 0.38 -0.2
526,645 - ABIE53_004349 0.44 -1.4
526,645 - ABIE53_004349 0.44 +0.2
526,666 + ABIE53_004349 0.46 -1.4
526,667 - ABIE53_004349 0.46 -0.2
526,668 + ABIE53_004349 0.46 -0.8
526,668 + ABIE53_004349 0.46 -1.9
526,669 - ABIE53_004349 0.46 -1.8
526,669 - ABIE53_004349 0.46 -0.5
526,687 + ABIE53_004349 0.48 +0.6
526,688 - ABIE53_004349 0.48 +0.8
526,774 + ABIE53_004349 0.56 +1.4
526,876 + ABIE53_004349 0.66 -0.5
526,877 - ABIE53_004349 0.66 +2.1
526,900 + ABIE53_004349 0.68 -0.8
527,074 + ABIE53_004349 0.84 +0.2
527,101 + ABIE53_004349 0.87 +1.8
527,102 - ABIE53_004349 0.87 -0.5
527,185 + -1.6
527,314 + +1.8
527,315 - -0.2
527,319 + +2.3
527,320 - -0.2
527,529 + ABIE53_004350 0.11 -0.5
527,529 + ABIE53_004350 0.11 +1.2
527,530 - ABIE53_004350 0.11 +2.2
527,530 - ABIE53_004350 0.11 +1.2
527,530 - ABIE53_004350 0.11 -0.4
527,681 + ABIE53_004350 0.26 +2.2
527,682 - ABIE53_004350 0.26 +0.8
527,851 + ABIE53_004350 0.42 +1.4
527,851 + ABIE53_004350 0.42 -0.6
527,852 - ABIE53_004350 0.42 +2.6
527,852 - ABIE53_004350 0.42 +0.8
527,876 - ABIE53_004350 0.45 -1.0
527,940 - ABIE53_004350 0.51 -2.4
527,956 + ABIE53_004350 0.52 -0.8
528,042 + ABIE53_004350 0.61 +1.5
528,226 + ABIE53_004350 0.78 +0.8
528,227 - ABIE53_004350 0.78 -1.4
528,227 - ABIE53_004350 0.78 +1.5
528,227 - ABIE53_004350 0.78 -2.9

Or see this region's nucleotide sequence