Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004216

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004215 and ABIE53_004216 are separated by 362 nucleotidesABIE53_004216 and ABIE53_004217 are separated by 31 nucleotides ABIE53_004215: ABIE53_004215 - cytochrome c biogenesis protein CcdA/thiol-disulfide isomerase/thioredoxin, at 389,274 to 391,175 _004215 ABIE53_004216: ABIE53_004216 - thiol-disulfide isomerase/thioredoxin, at 391,538 to 392,089 _004216 ABIE53_004217: ABIE53_004217 - LysR family glycine cleavage system transcriptional activator, at 392,121 to 393,089 _004217 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 390.608 kb on - strand, within ABIE53_004215at 390.608 kb on - strand, within ABIE53_004215at 390.804 kb on + strand, within ABIE53_004215at 390.805 kb on - strand, within ABIE53_004215at 390.967 kb on + strand, within ABIE53_004215at 391.136 kb on + strandat 391.136 kb on + strandat 391.136 kb on + strandat 391.136 kb on + strandat 391.176 kb on - strandat 391.206 kb on + strandat 391.238 kb on - strandat 391.296 kb on - strandat 391.299 kb on + strandat 391.299 kb on + strandat 391.300 kb on - strandat 391.300 kb on - strandat 391.300 kb on - strandat 391.309 kb on + strandat 391.332 kb on + strandat 391.332 kb on + strandat 391.332 kb on + strandat 391.333 kb on - strandat 391.384 kb on - strandat 391.444 kb on + strandat 391.444 kb on + strandat 391.444 kb on + strandat 391.445 kb on - strandat 391.445 kb on - strandat 391.466 kb on + strandat 391.467 kb on - strandat 391.669 kb on - strand, within ABIE53_004216at 391.754 kb on + strand, within ABIE53_004216at 391.754 kb on + strand, within ABIE53_004216at 391.754 kb on + strand, within ABIE53_004216at 391.754 kb on + strand, within ABIE53_004216at 391.755 kb on - strand, within ABIE53_004216at 391.755 kb on - strand, within ABIE53_004216at 391.755 kb on - strand, within ABIE53_004216at 391.788 kb on - strand, within ABIE53_004216at 391.802 kb on + strand, within ABIE53_004216at 391.803 kb on - strand, within ABIE53_004216at 391.803 kb on - strand, within ABIE53_004216at 391.803 kb on - strand, within ABIE53_004216at 391.804 kb on + strand, within ABIE53_004216at 391.805 kb on - strand, within ABIE53_004216at 391.805 kb on - strand, within ABIE53_004216at 391.805 kb on - strand, within ABIE53_004216at 391.805 kb on - strand, within ABIE53_004216at 391.811 kb on + strand, within ABIE53_004216at 391.857 kb on - strand, within ABIE53_004216at 391.941 kb on - strand, within ABIE53_004216at 391.970 kb on + strand, within ABIE53_004216at 391.985 kb on + strand, within ABIE53_004216at 391.985 kb on + strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 391.986 kb on - strand, within ABIE53_004216at 392.015 kb on + strand, within ABIE53_004216at 392.016 kb on - strand, within ABIE53_004216at 392.040 kb on - strandat 392.238 kb on + strand, within ABIE53_004217at 392.238 kb on + strand, within ABIE53_004217at 392.461 kb on + strand, within ABIE53_004217at 392.538 kb on + strand, within ABIE53_004217at 392.538 kb on + strand, within ABIE53_004217at 392.538 kb on + strand, within ABIE53_004217at 392.539 kb on - strand, within ABIE53_004217at 392.547 kb on + strand, within ABIE53_004217at 392.742 kb on + strand, within ABIE53_004217at 392.742 kb on + strand, within ABIE53_004217at 392.742 kb on + strand, within ABIE53_004217at 392.742 kb on + strand, within ABIE53_004217at 392.742 kb on + strand, within ABIE53_004217at 392.742 kb on + strand, within ABIE53_004217at 392.743 kb on - strand, within ABIE53_004217at 392.743 kb on - strand, within ABIE53_004217at 392.743 kb on - strand, within ABIE53_004217at 392.764 kb on + strand, within ABIE53_004217at 392.764 kb on + strand, within ABIE53_004217at 392.765 kb on - strand, within ABIE53_004217at 392.765 kb on - strand, within ABIE53_004217at 392.886 kb on - strand, within ABIE53_004217at 392.892 kb on - strand, within ABIE53_004217at 393.001 kb on - strandat 393.001 kb on - strandat 393.003 kb on + strandat 393.003 kb on + strandat 393.003 kb on + strandat 393.003 kb on + strandat 393.003 kb on + strandat 393.004 kb on - strandat 393.014 kb on + strandat 393.014 kb on + strandat 393.014 kb on + strandat 393.015 kb on - strandat 393.015 kb on - strandat 393.015 kb on - strandat 393.015 kb on - strandat 393.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
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390,608 - ABIE53_004215 0.70 +0.2
390,608 - ABIE53_004215 0.70 +5.2
390,804 + ABIE53_004215 0.80 +0.6
390,805 - ABIE53_004215 0.80 -1.8
390,967 + ABIE53_004215 0.89 +0.6
391,136 + -0.4
391,136 + -2.0
391,136 + -2.2
391,136 + +0.2
391,176 - -1.0
391,206 + -0.5
391,238 - -1.1
391,296 - +0.1
391,299 + +0.1
391,299 + -0.2
391,300 - -1.5
391,300 - -0.3
391,300 - -0.2
391,309 + -1.0
391,332 + -2.1
391,332 + +0.8
391,332 + -1.0
391,333 - -1.3
391,384 - -2.9
391,444 + +3.2
391,444 + -2.4
391,444 + -0.2
391,445 - -1.3
391,445 - +2.2
391,466 + -0.4
391,467 - -1.1
391,669 - ABIE53_004216 0.24 +0.2
391,754 + ABIE53_004216 0.39 -2.9
391,754 + ABIE53_004216 0.39 -0.0
391,754 + ABIE53_004216 0.39 +0.1
391,754 + ABIE53_004216 0.39 -0.5
391,755 - ABIE53_004216 0.39 -1.0
391,755 - ABIE53_004216 0.39 +2.2
391,755 - ABIE53_004216 0.39 +1.5
391,788 - ABIE53_004216 0.45 -0.2
391,802 + ABIE53_004216 0.48 -0.5
391,803 - ABIE53_004216 0.48 +0.0
391,803 - ABIE53_004216 0.48 +1.0
391,803 - ABIE53_004216 0.48 -0.1
391,804 + ABIE53_004216 0.48 -0.2
391,805 - ABIE53_004216 0.48 +1.4
391,805 - ABIE53_004216 0.48 +0.7
391,805 - ABIE53_004216 0.48 -1.3
391,805 - ABIE53_004216 0.48 +0.6
391,811 + ABIE53_004216 0.49 +0.8
391,857 - ABIE53_004216 0.58 +0.2
391,941 - ABIE53_004216 0.73 -2.8
391,970 + ABIE53_004216 0.78 -1.0
391,985 + ABIE53_004216 0.81 +2.4
391,985 + ABIE53_004216 0.81 +2.2
391,986 - ABIE53_004216 0.81 -1.2
391,986 - ABIE53_004216 0.81 -1.5
391,986 - ABIE53_004216 0.81 -2.7
391,986 - ABIE53_004216 0.81 +0.0
391,986 - ABIE53_004216 0.81 +0.6
391,986 - ABIE53_004216 0.81 -0.8
391,986 - ABIE53_004216 0.81 -1.0
391,986 - ABIE53_004216 0.81 -0.5
392,015 + ABIE53_004216 0.86 -1.1
392,016 - ABIE53_004216 0.87 +2.8
392,040 - -0.2
392,238 + ABIE53_004217 0.12 -0.5
392,238 + ABIE53_004217 0.12 -1.3
392,461 + ABIE53_004217 0.35 +0.4
392,538 + ABIE53_004217 0.43 -1.5
392,538 + ABIE53_004217 0.43 +1.7
392,538 + ABIE53_004217 0.43 -1.9
392,539 - ABIE53_004217 0.43 +2.5
392,547 + ABIE53_004217 0.44 +1.7
392,742 + ABIE53_004217 0.64 -1.3
392,742 + ABIE53_004217 0.64 -1.1
392,742 + ABIE53_004217 0.64 +1.7
392,742 + ABIE53_004217 0.64 -1.3
392,742 + ABIE53_004217 0.64 -2.0
392,742 + ABIE53_004217 0.64 +0.2
392,743 - ABIE53_004217 0.64 +0.1
392,743 - ABIE53_004217 0.64 +3.1
392,743 - ABIE53_004217 0.64 +0.7
392,764 + ABIE53_004217 0.66 +1.8
392,764 + ABIE53_004217 0.66 +2.4
392,765 - ABIE53_004217 0.66 +0.8
392,765 - ABIE53_004217 0.66 -0.1
392,886 - ABIE53_004217 0.79 -1.5
392,892 - ABIE53_004217 0.80 +0.7
393,001 - -1.2
393,001 - +0.2
393,003 + +1.0
393,003 + +1.6
393,003 + +0.1
393,003 + -1.3
393,003 + +0.8
393,004 - -0.1
393,014 + -0.8
393,014 + +2.8
393,014 + -1.1
393,015 - +1.8
393,015 - +1.8
393,015 - -1.5
393,015 - -1.2
393,015 - +0.9

Or see this region's nucleotide sequence