Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002957

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,344,925	+		ABIE53_002956	0.30	-1.4
3,344,925	+		ABIE53_002956	0.30	-0.1
3,344,925	+		ABIE53_002956	0.30	+0.3
3,344,926	-		ABIE53_002956	0.31	+2.2
3,344,926	-		ABIE53_002956	0.31	+0.6
3,345,297	+		ABIE53_002956	0.58	+0.3
3,345,297	+		ABIE53_002956	0.58	-0.9
3,345,298	-		ABIE53_002956	0.58	+0.2
3,345,298	-		ABIE53_002956	0.58	+0.3
3,345,298	-		ABIE53_002956	0.58	+1.0
3,345,298	-		ABIE53_002956	0.58	-1.1
3,345,498	-		ABIE53_002956	0.73	-0.4
3,345,584	+		ABIE53_002956	0.80	+0.1
3,345,595	-		ABIE53_002956	0.80	+0.9
3,345,645	+		ABIE53_002956	0.84	-2.4
3,345,646	-		ABIE53_002956	0.84	-0.7
3,345,646	-		ABIE53_002956	0.84	-1.8
3,345,687	+		ABIE53_002956	0.87	-1.8
3,345,688	-		ABIE53_002956	0.87	+1.9
3,345,759	-				+0.3
3,345,759	-				-0.3
3,345,773	+				+0.2
3,345,773	+				-1.4
3,345,774	-				-0.4
3,345,850	+				-2.0
3,345,850	+				-0.1
3,345,850	+				-0.9
3,345,850	+				-0.1
3,345,850	+				-0.7
3,345,850	+				+0.4
3,345,850	+				-0.4
3,345,851	-				-1.3
3,345,851	-				+1.5
3,345,851	-				-1.1
3,345,851	-				+0.3
3,345,851	-				-1.5
3,345,919	+				-1.9
3,345,920	-				-0.4
3,346,321	+		ABIE53_002957	0.50	-0.1
3,346,322	-		ABIE53_002957	0.50	-0.7
3,346,322	-		ABIE53_002957	0.50	+0.3
3,346,370	-		ABIE53_002957	0.55	+1.0
3,346,417	-		ABIE53_002957	0.60	-2.0
3,346,417	-		ABIE53_002957	0.60	-2.3
3,346,484	-		ABIE53_002957	0.68	-0.4
3,346,484	-		ABIE53_002957	0.68	-1.5
3,346,484	-		ABIE53_002957	0.68	-2.1
3,346,645	+		ABIE53_002957	0.85	-0.4
3,346,645	+		ABIE53_002957	0.85	-0.5
3,346,645	+		ABIE53_002957	0.85	-0.4
3,346,645	+		ABIE53_002957	0.85	+0.4
3,346,645	+		ABIE53_002957	0.85	-1.1
3,346,646	-		ABIE53_002957	0.85	-2.3
3,346,646	-		ABIE53_002957	0.85	+0.5
3,346,646	-		ABIE53_002957	0.85	+0.6
3,346,646	-		ABIE53_002957	0.85	+0.1
3,346,646	-		ABIE53_002957	0.85	-0.4
3,346,660	+		ABIE53_002957	0.86	+0.9
3,346,660	+		ABIE53_002957	0.86	-1.0
3,346,660	+		ABIE53_002957	0.86	-0.9
3,346,660	+		ABIE53_002957	0.86	-0.6
3,346,660	+		ABIE53_002957	0.86	-0.3
3,346,660	+		ABIE53_002957	0.86	+0.3
3,346,661	-		ABIE53_002957	0.86	+0.1
3,346,661	-		ABIE53_002957	0.86	+1.7
3,346,661	-		ABIE53_002957	0.86	+0.4
3,346,661	-		ABIE53_002957	0.86	-0.9
3,346,661	-		ABIE53_002957	0.86	-3.3
3,346,661	-		ABIE53_002957	0.86	+0.4
3,346,791	+				-1.1
3,346,791	+				-0.9
3,346,884	+		ABIE53_002958	0.20	-1.2
3,346,884	+		ABIE53_002958	0.20	-1.1
3,346,884	+		ABIE53_002958	0.20	-0.7
3,346,884	+		ABIE53_002958	0.20	-0.2
3,346,884	+		ABIE53_002958	0.20	-2.1
3,346,884	+		ABIE53_002958	0.20	-1.0
3,346,884	+		ABIE53_002958	0.20	-0.7
3,346,884	+		ABIE53_002958	0.20	-2.2
3,346,885	-		ABIE53_002958	0.20	+0.3
3,346,885	-		ABIE53_002958	0.20	-1.5
3,346,885	-		ABIE53_002958	0.20	+0.2
3,346,885	-		ABIE53_002958	0.20	+1.5
3,346,885	-		ABIE53_002958	0.20	-0.1
3,346,885	-		ABIE53_002958	0.20	+0.9
3,346,885	-		ABIE53_002958	0.20	+0.3
3,346,885	-		ABIE53_002958	0.20	+2.2
3,346,950	+		ABIE53_002958	0.34	+1.5
3,346,951	-		ABIE53_002958	0.35	-1.5
3,347,028	+		ABIE53_002958	0.51	-2.3
3,347,028	+		ABIE53_002958	0.51	-0.5
3,347,028	+		ABIE53_002958	0.51	-0.1
3,347,028	+		ABIE53_002958	0.51	+0.9
3,347,029	-		ABIE53_002958	0.51	-0.1
3,347,029	-		ABIE53_002958	0.51	-0.4
3,347,103	+		ABIE53_002958	0.67	+0.1
3,347,103	+		ABIE53_002958	0.67	-0.4
3,347,103	+		ABIE53_002958	0.67	+1.0
3,347,103	+		ABIE53_002958	0.67	-1.2
3,347,103	+		ABIE53_002958	0.67	+1.1
3,347,103	+		ABIE53_002958	0.67	-1.9
3,347,127	+		ABIE53_002958	0.72	-0.2
3,347,127	+		ABIE53_002958	0.72	-0.1
3,347,127	+		ABIE53_002958	0.72	-0.4
3,347,127	+		ABIE53_002958	0.72	+1.5
3,347,128	-		ABIE53_002958	0.73	+3.1
3,347,128	-		ABIE53_002958	0.73	+0.9
3,347,128	-		ABIE53_002958	0.73	+0.9
3,347,133	+		ABIE53_002958	0.74	-1.9
3,347,133	+		ABIE53_002958	0.74	+0.7
3,347,133	+		ABIE53_002958	0.74	+0.9
3,347,133	+		ABIE53_002958	0.74	-1.5
3,347,133	+		ABIE53_002958	0.74	-2.3
3,347,133	+		ABIE53_002958	0.74	-4.2
3,347,133	+		ABIE53_002958	0.74	-2.7
3,347,134	-		ABIE53_002958	0.74	-1.3
3,347,134	-		ABIE53_002958	0.74	+0.7
3,347,134	-		ABIE53_002958	0.74	-0.1
3,347,134	-		ABIE53_002958	0.74	-1.4
3,347,136	+		ABIE53_002958	0.74	-1.4
3,347,137	-		ABIE53_002958	0.75	+0.2
3,347,161	-		ABIE53_002958	0.80	-3.4
3,347,297	+				-1.8
3,347,429	+				-1.9
3,347,429	+				+1.7
3,347,429	+				-0.4
3,347,430	-				+6.1
3,347,430	-				+3.0
3,347,430	-				+3.3
3,347,430	-				+7.8
3,347,431	-				+4.6
3,347,547	-		ABIE53_002959	0.22	-1.9
3,347,597	+		ABIE53_002959	0.32	-0.4
3,347,598	-		ABIE53_002959	0.32	+4.9
3,347,633	+		ABIE53_002959	0.39	+0.7
3,347,633	+		ABIE53_002959	0.39	-1.8
3,347,634	-		ABIE53_002959	0.39	+2.8
3,347,634	-		ABIE53_002959	0.39	+3.4