Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000738 and ABIE53_000739 overlap by 14 nucleotides ABIE53_000739 and ABIE53_000740 are separated by 2 nucleotides ABIE53_000740 and ABIE53_000741 are separated by 67 nucleotides
ABIE53_000738: ABIE53_000738 - cytochrome c oxidase subunit 1, at 796,325 to 797,950
_000738
ABIE53_000739: ABIE53_000739 - cytochrome c oxidase subunit 2, at 797,937 to 798,515
_000739
ABIE53_000740: ABIE53_000740 - hypothetical protein, at 798,518 to 798,694
_000740
ABIE53_000741: ABIE53_000741 - mono/diheme cytochrome c family protein, at 798,762 to 800,102
_000741
Position (kb) 797
798
799 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 797.224 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.226 kb on + strand, within ABIE53_000738 at 797.227 kb on - strand, within ABIE53_000738 at 797.227 kb on - strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.262 kb on + strand, within ABIE53_000738 at 797.263 kb on - strand, within ABIE53_000738 at 797.263 kb on - strand, within ABIE53_000738 at 797.274 kb on + strand, within ABIE53_000738 at 797.274 kb on + strand, within ABIE53_000738 at 797.274 kb on + strand, within ABIE53_000738 at 797.275 kb on - strand, within ABIE53_000738 at 797.275 kb on - strand, within ABIE53_000738 at 797.295 kb on + strand, within ABIE53_000738 at 797.296 kb on - strand, within ABIE53_000738 at 797.296 kb on - strand, within ABIE53_000738 at 797.353 kb on + strand, within ABIE53_000738 at 797.354 kb on - strand, within ABIE53_000738 at 797.433 kb on + strand, within ABIE53_000738 at 797.434 kb on - strand, within ABIE53_000738 at 797.568 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.571 kb on + strand, within ABIE53_000738 at 797.572 kb on - strand, within ABIE53_000738 at 797.572 kb on - strand, within ABIE53_000738 at 797.572 kb on - strand, within ABIE53_000738 at 797.598 kb on + strand, within ABIE53_000738 at 797.598 kb on + strand, within ABIE53_000738 at 797.599 kb on - strand, within ABIE53_000738 at 797.599 kb on - strand, within ABIE53_000738 at 797.607 kb on + strand, within ABIE53_000738 at 797.608 kb on - strand, within ABIE53_000738 at 797.608 kb on - strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.775 kb on + strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.776 kb on - strand, within ABIE53_000738 at 797.811 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.814 kb on + strand at 797.815 kb on - strand at 797.815 kb on - strand at 797.815 kb on - strand at 797.939 kb on - strand at 798.110 kb on - strand, within ABIE53_000739 at 798.238 kb on + strand, within ABIE53_000739 at 798.392 kb on - strand, within ABIE53_000739 at 798.392 kb on - strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.414 kb on + strand, within ABIE53_000739 at 798.415 kb on - strand, within ABIE53_000739 at 798.415 kb on - strand, within ABIE53_000739 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.555 kb on + strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.556 kb on - strand, within ABIE53_000740 at 798.590 kb on - strand, within ABIE53_000740 at 798.842 kb on + strand at 798.843 kb on - strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.844 kb on + strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 799.072 kb on + strand, within ABIE53_000741 at 799.072 kb on + strand, within ABIE53_000741 at 799.072 kb on + strand, within ABIE53_000741 at 799.072 kb on + strand, within ABIE53_000741 at 799.073 kb on - strand, within ABIE53_000741 at 799.073 kb on - strand, within ABIE53_000741 at 799.095 kb on + strand, within ABIE53_000741 at 799.095 kb on + strand, within ABIE53_000741 at 799.095 kb on + strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.096 kb on - strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.198 kb on + strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.199 kb on - strand, within ABIE53_000741 at 799.213 kb on + strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.214 kb on - strand, within ABIE53_000741 at 799.237 kb on + strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.238 kb on - strand, within ABIE53_000741 at 799.342 kb on + strand, within ABIE53_000741 at 799.342 kb on + strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.343 kb on - strand, within ABIE53_000741 at 799.457 kb on - strand, within ABIE53_000741
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 797,224 + ABIE53_000738 0.55 -0.2 797,226 + ABIE53_000738 0.55 -1.4 797,226 + ABIE53_000738 0.55 +0.8 797,226 + ABIE53_000738 0.55 +4.1 797,226 + ABIE53_000738 0.55 -2.4 797,226 + ABIE53_000738 0.55 +0.1 797,226 + ABIE53_000738 0.55 -0.9 797,227 - ABIE53_000738 0.55 -0.8 797,227 - ABIE53_000738 0.55 -1.2 797,262 + ABIE53_000738 0.58 -0.2 797,262 + ABIE53_000738 0.58 +3.0 797,262 + ABIE53_000738 0.58 +0.2 797,262 + ABIE53_000738 0.58 +0.1 797,263 - ABIE53_000738 0.58 -1.4 797,263 - ABIE53_000738 0.58 -1.4 797,274 + ABIE53_000738 0.58 -1.2 797,274 + ABIE53_000738 0.58 -1.2 797,274 + ABIE53_000738 0.58 -2.2 797,275 - ABIE53_000738 0.58 -1.6 797,275 - ABIE53_000738 0.58 +2.8 797,295 + ABIE53_000738 0.60 +1.0 797,296 - ABIE53_000738 0.60 -0.0 797,296 - ABIE53_000738 0.60 -1.6 797,353 + ABIE53_000738 0.63 -0.5 797,354 - ABIE53_000738 0.63 -0.9 797,433 + ABIE53_000738 0.68 +0.6 797,434 - ABIE53_000738 0.68 +0.3 797,568 + ABIE53_000738 0.76 -0.7 797,571 + ABIE53_000738 0.77 +1.8 797,571 + ABIE53_000738 0.77 +2.5 797,571 + ABIE53_000738 0.77 -0.1 797,571 + ABIE53_000738 0.77 +0.7 797,571 + ABIE53_000738 0.77 +0.2 797,571 + ABIE53_000738 0.77 -0.0 797,572 - ABIE53_000738 0.77 -1.3 797,572 - ABIE53_000738 0.77 -1.7 797,572 - ABIE53_000738 0.77 -1.0 797,598 + ABIE53_000738 0.78 +0.8 797,598 + ABIE53_000738 0.78 -0.0 797,599 - ABIE53_000738 0.78 +0.2 797,599 - ABIE53_000738 0.78 +0.8 797,607 + ABIE53_000738 0.79 +1.1 797,608 - ABIE53_000738 0.79 +1.8 797,608 - ABIE53_000738 0.79 +1.1 797,775 + ABIE53_000738 0.89 +0.6 797,775 + ABIE53_000738 0.89 -2.3 797,775 + ABIE53_000738 0.89 -0.8 797,776 - ABIE53_000738 0.89 +0.8 797,776 - ABIE53_000738 0.89 +1.8 797,776 - ABIE53_000738 0.89 -1.6 797,811 + -0.1 797,814 + -2.4 797,814 + -0.9 797,814 + -1.2 797,814 + -1.6 797,815 - +0.3 797,815 - -0.6 797,815 - -1.6 797,939 - +1.5 798,110 - ABIE53_000739 0.30 +0.2 798,238 + ABIE53_000739 0.52 +1.2 798,392 - ABIE53_000739 0.79 +0.4 798,392 - ABIE53_000739 0.79 +0.5 798,414 + ABIE53_000739 0.82 -0.2 798,414 + ABIE53_000739 0.82 -1.6 798,414 + ABIE53_000739 0.82 +2.3 798,415 - ABIE53_000739 0.83 -1.2 798,415 - ABIE53_000739 0.83 +1.8 798,555 + ABIE53_000740 0.21 +0.2 798,555 + ABIE53_000740 0.21 -0.5 798,555 + ABIE53_000740 0.21 +0.5 798,555 + ABIE53_000740 0.21 +0.4 798,555 + ABIE53_000740 0.21 +0.3 798,555 + ABIE53_000740 0.21 -0.1 798,555 + ABIE53_000740 0.21 -1.2 798,556 - ABIE53_000740 0.21 +3.2 798,556 - ABIE53_000740 0.21 +1.7 798,556 - ABIE53_000740 0.21 -0.8 798,556 - ABIE53_000740 0.21 +0.4 798,556 - ABIE53_000740 0.21 +0.0 798,590 - ABIE53_000740 0.41 -1.2 798,842 + +1.2 798,843 - +0.4 798,844 + +2.8 798,844 + -1.2 798,844 + -0.6 798,844 + +1.5 798,844 + +1.4 798,844 + -0.2 798,844 + +2.2 798,845 - -0.5 798,845 - -0.9 798,845 - -0.3 798,845 - +0.4 798,845 - -1.2 799,072 + ABIE53_000741 0.23 -2.2 799,072 + ABIE53_000741 0.23 +0.6 799,072 + ABIE53_000741 0.23 -1.2 799,072 + ABIE53_000741 0.23 +0.9 799,073 - ABIE53_000741 0.23 +0.1 799,073 - ABIE53_000741 0.23 +2.4 799,095 + ABIE53_000741 0.25 +2.8 799,095 + ABIE53_000741 0.25 +1.2 799,095 + ABIE53_000741 0.25 -1.2 799,096 - ABIE53_000741 0.25 -1.2 799,096 - ABIE53_000741 0.25 -0.2 799,096 - ABIE53_000741 0.25 -0.6 799,096 - ABIE53_000741 0.25 +1.8 799,198 + ABIE53_000741 0.33 +0.8 799,198 + ABIE53_000741 0.33 +2.2 799,198 + ABIE53_000741 0.33 +0.6 799,198 + ABIE53_000741 0.33 +1.1 799,198 + ABIE53_000741 0.33 +0.8 799,198 + ABIE53_000741 0.33 +0.5 799,198 + ABIE53_000741 0.33 -2.3 799,198 + ABIE53_000741 0.33 -0.6 799,198 + ABIE53_000741 0.33 +1.0 799,198 + ABIE53_000741 0.33 -1.4 799,198 + ABIE53_000741 0.33 -3.9 799,198 + ABIE53_000741 0.33 -2.3 799,199 - ABIE53_000741 0.33 -0.2 799,199 - ABIE53_000741 0.33 -0.7 799,199 - ABIE53_000741 0.33 -1.9 799,199 - ABIE53_000741 0.33 +0.6 799,199 - ABIE53_000741 0.33 -0.2 799,199 - ABIE53_000741 0.33 +1.8 799,199 - ABIE53_000741 0.33 -1.4 799,199 - ABIE53_000741 0.33 +0.4 799,199 - ABIE53_000741 0.33 +0.6 799,199 - ABIE53_000741 0.33 +0.2 799,199 - ABIE53_000741 0.33 -1.9 799,213 + ABIE53_000741 0.34 +0.1 799,214 - ABIE53_000741 0.34 -0.8 799,214 - ABIE53_000741 0.34 +1.8 799,214 - ABIE53_000741 0.34 +0.8 799,214 - ABIE53_000741 0.34 -0.6 799,214 - ABIE53_000741 0.34 -0.8 799,237 + ABIE53_000741 0.35 -2.7 799,238 - ABIE53_000741 0.35 -0.6 799,238 - ABIE53_000741 0.35 +1.8 799,238 - ABIE53_000741 0.35 -1.6 799,238 - ABIE53_000741 0.35 -1.6 799,238 - ABIE53_000741 0.35 -1.2 799,238 - ABIE53_000741 0.35 -0.7 799,342 + ABIE53_000741 0.43 -1.7 799,342 + ABIE53_000741 0.43 -0.6 799,343 - ABIE53_000741 0.43 -3.1 799,343 - ABIE53_000741 0.43 -1.6 799,343 - ABIE53_000741 0.43 +2.6 799,343 - ABIE53_000741 0.43 +1.8 799,457 - ABIE53_000741 0.52 +1.8
Or see this region's nucleotide sequence