Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4438

Experiment: KB with Isovanillin 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4436 and Psyr_4437 are separated by 51 nucleotidesPsyr_4437 and Psyr_4438 are separated by 13 nucleotidesPsyr_4438 and Psyr_4439 are separated by 112 nucleotides Psyr_4436: Psyr_4436 - urease, Metallo peptidase, MEROPS family M38, at 5,302,524 to 5,304,224 _4436 Psyr_4437: Psyr_4437 - hypothetical protein, at 5,304,276 to 5,304,884 _4437 Psyr_4438: Psyr_4438 - hypothetical protein, at 5,304,898 to 5,305,329 _4438 Psyr_4439: Psyr_4439 - histidine kinase, at 5,305,442 to 5,306,572 _4439 Position (kb) 5304 5305 5306Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5304.109 kb on - strandat 5304.109 kb on - strandat 5304.109 kb on - strandat 5304.141 kb on + strandat 5304.141 kb on + strandat 5304.142 kb on - strandat 5304.169 kb on + strandat 5304.170 kb on - strandat 5304.210 kb on + strandat 5304.261 kb on + strandat 5304.261 kb on + strandat 5304.262 kb on - strandat 5304.265 kb on + strandat 5304.265 kb on + strandat 5304.266 kb on - strandat 5304.266 kb on - strandat 5304.277 kb on + strandat 5304.389 kb on + strand, within Psyr_4437at 5304.403 kb on + strand, within Psyr_4437at 5304.403 kb on + strand, within Psyr_4437at 5304.404 kb on - strand, within Psyr_4437at 5304.404 kb on - strand, within Psyr_4437at 5304.404 kb on - strand, within Psyr_4437at 5304.478 kb on - strand, within Psyr_4437at 5304.478 kb on - strand, within Psyr_4437at 5304.506 kb on + strand, within Psyr_4437at 5304.506 kb on + strand, within Psyr_4437at 5304.507 kb on - strand, within Psyr_4437at 5304.507 kb on - strand, within Psyr_4437at 5304.507 kb on - strand, within Psyr_4437at 5304.507 kb on - strandat 5304.844 kb on - strandat 5304.900 kb on - strandat 5305.018 kb on + strand, within Psyr_4438at 5305.018 kb on + strand, within Psyr_4438at 5305.018 kb on + strand, within Psyr_4438at 5305.019 kb on - strand, within Psyr_4438at 5305.019 kb on - strand, within Psyr_4438at 5305.019 kb on - strand, within Psyr_4438at 5305.019 kb on - strand, within Psyr_4438at 5305.026 kb on - strand, within Psyr_4438at 5305.112 kb on + strand, within Psyr_4438at 5305.112 kb on + strand, within Psyr_4438at 5305.112 kb on + strand, within Psyr_4438at 5305.113 kb on - strand, within Psyr_4438at 5305.113 kb on - strand, within Psyr_4438at 5305.180 kb on + strand, within Psyr_4438at 5305.180 kb on + strand, within Psyr_4438at 5305.180 kb on + strand, within Psyr_4438at 5305.181 kb on - strand, within Psyr_4438at 5305.263 kb on + strand, within Psyr_4438at 5305.264 kb on - strand, within Psyr_4438at 5305.273 kb on + strand, within Psyr_4438at 5305.273 kb on + strand, within Psyr_4438at 5305.274 kb on - strand, within Psyr_4438at 5305.274 kb on - strand, within Psyr_4438at 5305.274 kb on - strand, within Psyr_4438at 5305.296 kb on + strandat 5305.320 kb on + strandat 5305.320 kb on + strandat 5305.320 kb on + strandat 5305.320 kb on + strandat 5305.320 kb on + strandat 5305.320 kb on + strandat 5305.320 kb on + strandat 5305.321 kb on - strandat 5305.321 kb on - strandat 5305.321 kb on - strandat 5305.329 kb on + strandat 5305.343 kb on + strandat 5305.343 kb on + strandat 5305.343 kb on + strandat 5305.361 kb on + strandat 5305.361 kb on + strandat 5305.362 kb on - strandat 5305.362 kb on - strandat 5305.362 kb on - strandat 5305.398 kb on + strandat 5305.398 kb on + strandat 5305.398 kb on + strandat 5305.399 kb on - strandat 5305.399 kb on - strandat 5305.399 kb on - strandat 5305.399 kb on - strandat 5305.399 kb on - strandat 5305.434 kb on - strandat 5305.465 kb on + strandat 5305.780 kb on - strand, within Psyr_4439at 5305.875 kb on - strand, within Psyr_4439at 5306.012 kb on + strand, within Psyr_4439at 5306.013 kb on - strand, within Psyr_4439at 5306.080 kb on - strand, within Psyr_4439at 5306.120 kb on + strand, within Psyr_4439at 5306.120 kb on + strand, within Psyr_4439at 5306.120 kb on + strand, within Psyr_4439at 5306.120 kb on + strand, within Psyr_4439at 5306.120 kb on + strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.121 kb on - strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.202 kb on + strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.203 kb on - strand, within Psyr_4439at 5306.304 kb on + strand, within Psyr_4439

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isovanillin 10 mM
remove
5,304,109 - +0.6
5,304,109 - +0.3
5,304,109 - +0.1
5,304,141 + -0.1
5,304,141 + -0.7
5,304,142 - +0.6
5,304,169 + +0.5
5,304,170 - +0.5
5,304,210 + +0.4
5,304,261 + -0.4
5,304,261 + -1.3
5,304,262 - +0.8
5,304,265 + -1.9
5,304,265 + -0.6
5,304,266 - +0.0
5,304,266 - +0.8
5,304,277 + -0.3
5,304,389 + Psyr_4437 0.19 +0.4
5,304,403 + Psyr_4437 0.21 +0.5
5,304,403 + Psyr_4437 0.21 +0.5
5,304,404 - Psyr_4437 0.21 +2.5
5,304,404 - Psyr_4437 0.21 -1.0
5,304,404 - Psyr_4437 0.21 -0.8
5,304,478 - Psyr_4437 0.33 -0.2
5,304,478 - Psyr_4437 0.33 +0.1
5,304,506 + Psyr_4437 0.38 +0.1
5,304,506 + Psyr_4437 0.38 +0.2
5,304,507 - Psyr_4437 0.38 +0.9
5,304,507 - Psyr_4437 0.38 -0.3
5,304,507 - Psyr_4437 0.38 +0.4
5,304,507 - +1.2
5,304,844 - -0.5
5,304,900 - +1.3
5,305,018 + Psyr_4438 0.28 +1.3
5,305,018 + Psyr_4438 0.28 -1.5
5,305,018 + Psyr_4438 0.28 -2.6
5,305,019 - Psyr_4438 0.28 -0.6
5,305,019 - Psyr_4438 0.28 +0.8
5,305,019 - Psyr_4438 0.28 -0.1
5,305,019 - Psyr_4438 0.28 -2.1
5,305,026 - Psyr_4438 0.30 +0.7
5,305,112 + Psyr_4438 0.50 -0.5
5,305,112 + Psyr_4438 0.50 -0.3
5,305,112 + Psyr_4438 0.50 -1.5
5,305,113 - Psyr_4438 0.50 -0.1
5,305,113 - Psyr_4438 0.50 +0.2
5,305,180 + Psyr_4438 0.65 -0.3
5,305,180 + Psyr_4438 0.65 -1.3
5,305,180 + Psyr_4438 0.65 -0.6
5,305,181 - Psyr_4438 0.66 -0.8
5,305,263 + Psyr_4438 0.84 -1.2
5,305,264 - Psyr_4438 0.85 +0.1
5,305,273 + Psyr_4438 0.87 +0.7
5,305,273 + Psyr_4438 0.87 -0.5
5,305,274 - Psyr_4438 0.87 -0.4
5,305,274 - Psyr_4438 0.87 -0.1
5,305,274 - Psyr_4438 0.87 -0.3
5,305,296 + +0.4
5,305,320 + -0.1
5,305,320 + +0.8
5,305,320 + -0.1
5,305,320 + -1.2
5,305,320 + -1.3
5,305,320 + -1.3
5,305,320 + -0.4
5,305,321 - +0.6
5,305,321 - -2.3
5,305,321 - -0.6
5,305,329 + -0.5
5,305,343 + +0.1
5,305,343 + +0.5
5,305,343 + +1.2
5,305,361 + -0.2
5,305,361 + +0.4
5,305,362 - -1.2
5,305,362 - +0.3
5,305,362 - -0.1
5,305,398 + -0.9
5,305,398 + -1.5
5,305,398 + -0.2
5,305,399 - -0.1
5,305,399 - -0.1
5,305,399 - -0.9
5,305,399 - -2.0
5,305,399 - +0.1
5,305,434 - -0.4
5,305,465 + +3.1
5,305,780 - Psyr_4439 0.30 -0.2
5,305,875 - Psyr_4439 0.38 +0.4
5,306,012 + Psyr_4439 0.50 -0.6
5,306,013 - Psyr_4439 0.50 -0.7
5,306,080 - Psyr_4439 0.56 -0.3
5,306,120 + Psyr_4439 0.60 -0.6
5,306,120 + Psyr_4439 0.60 -0.5
5,306,120 + Psyr_4439 0.60 -0.3
5,306,120 + Psyr_4439 0.60 +0.2
5,306,120 + Psyr_4439 0.60 +0.6
5,306,121 - Psyr_4439 0.60 -0.5
5,306,121 - Psyr_4439 0.60 -0.2
5,306,121 - Psyr_4439 0.60 -0.4
5,306,121 - Psyr_4439 0.60 +1.1
5,306,121 - Psyr_4439 0.60 -0.3
5,306,121 - Psyr_4439 0.60 +1.1
5,306,121 - Psyr_4439 0.60 +0.4
5,306,121 - Psyr_4439 0.60 +0.3
5,306,121 - Psyr_4439 0.60 +0.7
5,306,121 - Psyr_4439 0.60 -0.1
5,306,202 + Psyr_4439 0.67 +0.5
5,306,202 + Psyr_4439 0.67 -0.1
5,306,202 + Psyr_4439 0.67 -1.1
5,306,202 + Psyr_4439 0.67 +0.8
5,306,202 + Psyr_4439 0.67 +0.3
5,306,202 + Psyr_4439 0.67 +0.9
5,306,202 + Psyr_4439 0.67 +1.9
5,306,202 + Psyr_4439 0.67 +0.8
5,306,202 + Psyr_4439 0.67 +1.1
5,306,202 + Psyr_4439 0.67 -1.0
5,306,203 - Psyr_4439 0.67 +0.0
5,306,203 - Psyr_4439 0.67 -0.7
5,306,203 - Psyr_4439 0.67 +0.5
5,306,203 - Psyr_4439 0.67 -1.0
5,306,203 - Psyr_4439 0.67 -0.3
5,306,203 - Psyr_4439 0.67 -0.0
5,306,203 - Psyr_4439 0.67 +0.1
5,306,203 - Psyr_4439 0.67 +0.7
5,306,203 - Psyr_4439 0.67 -0.3
5,306,203 - Psyr_4439 0.67 -0.0
5,306,203 - Psyr_4439 0.67 -0.8
5,306,203 - Psyr_4439 0.67 +0.7
5,306,203 - Psyr_4439 0.67 +0.3
5,306,304 + Psyr_4439 0.76 +1.8

Or see this region's nucleotide sequence