Experiment: KB with Isovanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4290 and Psyr_4291 are separated by 61 nucleotides Psyr_4291 and Psyr_4292 are separated by 877 nucleotides
Psyr_4290: Psyr_4290 - conserved domain protein, at 5,116,745 to 5,117,734
_4290
Psyr_4291: Psyr_4291 - hypothetical protein, at 5,117,796 to 5,118,161
_4291
Psyr_4292: Psyr_4292 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 5,119,039 to 5,119,629
_4292
Position (kb) 5117
5118
5119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5116.894 kb on - strand, within Psyr_4290 at 5116.894 kb on - strand, within Psyr_4290 at 5116.894 kb on - strand, within Psyr_4290 at 5116.961 kb on + strand, within Psyr_4290 at 5116.962 kb on - strand, within Psyr_4290 at 5116.962 kb on - strand, within Psyr_4290 at 5116.962 kb on - strand, within Psyr_4290 at 5117.319 kb on - strand, within Psyr_4290 at 5117.319 kb on - strand, within Psyr_4290 at 5117.342 kb on + strand, within Psyr_4290 at 5117.343 kb on - strand, within Psyr_4290 at 5117.415 kb on - strand, within Psyr_4290 at 5117.415 kb on - strand, within Psyr_4290 at 5117.415 kb on - strand, within Psyr_4290 at 5117.438 kb on + strand, within Psyr_4290 at 5117.439 kb on - strand, within Psyr_4290 at 5117.439 kb on - strand, within Psyr_4290 at 5117.477 kb on + strand, within Psyr_4290 at 5117.477 kb on + strand, within Psyr_4290 at 5117.477 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.498 kb on + strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.499 kb on - strand, within Psyr_4290 at 5117.600 kb on + strand, within Psyr_4290 at 5117.600 kb on + strand, within Psyr_4290 at 5117.600 kb on + strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.601 kb on - strand, within Psyr_4290 at 5117.609 kb on + strand, within Psyr_4290 at 5117.609 kb on + strand, within Psyr_4290 at 5117.609 kb on + strand, within Psyr_4290 at 5117.610 kb on - strand, within Psyr_4290 at 5117.610 kb on - strand, within Psyr_4290 at 5117.745 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.747 kb on + strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.748 kb on - strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.751 kb on + strand at 5117.752 kb on - strand at 5117.752 kb on - strand at 5117.780 kb on - strand at 5117.780 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.784 kb on - strand at 5117.848 kb on + strand, within Psyr_4291 at 5117.848 kb on + strand, within Psyr_4291 at 5117.848 kb on + strand, within Psyr_4291 at 5117.849 kb on - strand, within Psyr_4291 at 5117.849 kb on - strand, within Psyr_4291 at 5117.849 kb on - strand, within Psyr_4291 at 5117.876 kb on - strand, within Psyr_4291 at 5117.876 kb on - strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.111 kb on + strand, within Psyr_4291 at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.769 kb on + strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.770 kb on - strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.771 kb on + strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.772 kb on - strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.773 kb on + strand at 5118.774 kb on - strand at 5118.774 kb on - strand at 5118.774 kb on - strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.783 kb on + strand at 5118.784 kb on - strand at 5118.784 kb on - strand at 5118.834 kb on - strand at 5118.834 kb on - strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.946 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.948 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5118.960 kb on + strand at 5119.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isovanillin 10 mM remove 5,116,894 - Psyr_4290 0.15 -0.9 5,116,894 - Psyr_4290 0.15 +1.7 5,116,894 - Psyr_4290 0.15 +0.4 5,116,961 + Psyr_4290 0.22 -0.9 5,116,962 - Psyr_4290 0.22 +0.5 5,116,962 - Psyr_4290 0.22 -0.4 5,116,962 - Psyr_4290 0.22 -0.4 5,117,319 - Psyr_4290 0.58 +0.0 5,117,319 - Psyr_4290 0.58 +0.0 5,117,342 + Psyr_4290 0.60 -0.5 5,117,343 - Psyr_4290 0.60 -0.0 5,117,415 - Psyr_4290 0.68 -0.3 5,117,415 - Psyr_4290 0.68 -0.5 5,117,415 - Psyr_4290 0.68 -0.5 5,117,438 + Psyr_4290 0.70 +0.2 5,117,439 - Psyr_4290 0.70 -1.2 5,117,439 - Psyr_4290 0.70 +0.3 5,117,477 + Psyr_4290 0.74 -0.5 5,117,477 + Psyr_4290 0.74 +0.4 5,117,477 + Psyr_4290 0.74 -0.2 5,117,498 + Psyr_4290 0.76 -1.4 5,117,498 + Psyr_4290 0.76 +0.6 5,117,498 + Psyr_4290 0.76 -0.7 5,117,498 + Psyr_4290 0.76 +1.7 5,117,498 + Psyr_4290 0.76 +0.2 5,117,499 - Psyr_4290 0.76 +0.3 5,117,499 - Psyr_4290 0.76 -0.6 5,117,499 - Psyr_4290 0.76 +0.3 5,117,499 - Psyr_4290 0.76 -0.7 5,117,499 - Psyr_4290 0.76 -0.1 5,117,499 - Psyr_4290 0.76 -2.4 5,117,499 - Psyr_4290 0.76 -0.1 5,117,600 + Psyr_4290 0.86 -0.6 5,117,600 + Psyr_4290 0.86 -0.6 5,117,600 + Psyr_4290 0.86 +0.1 5,117,601 - Psyr_4290 0.86 +0.1 5,117,601 - Psyr_4290 0.86 +0.5 5,117,601 - Psyr_4290 0.86 +0.8 5,117,601 - Psyr_4290 0.86 +0.1 5,117,601 - Psyr_4290 0.86 -0.1 5,117,601 - Psyr_4290 0.86 -0.3 5,117,609 + Psyr_4290 0.87 +0.9 5,117,609 + Psyr_4290 0.87 +0.2 5,117,609 + Psyr_4290 0.87 -0.0 5,117,610 - Psyr_4290 0.87 +1.0 5,117,610 - Psyr_4290 0.87 -0.3 5,117,745 + +0.8 5,117,747 + +0.3 5,117,747 + -1.5 5,117,747 + -1.8 5,117,747 + +0.6 5,117,747 + -0.8 5,117,747 + +0.3 5,117,747 + +0.0 5,117,747 + -0.2 5,117,747 + -0.5 5,117,747 + +0.5 5,117,747 + -0.4 5,117,747 + +0.5 5,117,747 + +0.4 5,117,747 + +0.7 5,117,748 - -0.8 5,117,748 - +0.1 5,117,748 - +0.1 5,117,748 - -0.0 5,117,748 - +0.8 5,117,748 - -0.1 5,117,748 - -0.6 5,117,748 - -0.3 5,117,748 - -0.6 5,117,748 - -0.8 5,117,748 - +0.1 5,117,748 - +2.3 5,117,751 + -1.0 5,117,751 + -0.9 5,117,751 + -0.0 5,117,751 + +0.3 5,117,751 + -0.1 5,117,752 - -0.6 5,117,752 - +1.1 5,117,780 - -0.0 5,117,780 - +0.2 5,117,784 - +0.1 5,117,784 - -0.5 5,117,784 - +0.1 5,117,784 - -0.4 5,117,784 - +0.8 5,117,784 - -0.3 5,117,784 - -0.7 5,117,784 - +0.0 5,117,784 - -0.9 5,117,784 - -0.5 5,117,784 - -0.1 5,117,784 - -0.3 5,117,784 - -1.0 5,117,784 - -0.1 5,117,784 - -2.5 5,117,784 - +1.1 5,117,784 - -0.9 5,117,784 - +1.0 5,117,784 - -0.2 5,117,784 - +1.0 5,117,784 - +0.6 5,117,848 + Psyr_4291 0.14 +0.9 5,117,848 + Psyr_4291 0.14 +0.9 5,117,848 + Psyr_4291 0.14 +0.1 5,117,849 - Psyr_4291 0.14 +0.3 5,117,849 - Psyr_4291 0.14 +1.3 5,117,849 - Psyr_4291 0.14 +0.1 5,117,876 - Psyr_4291 0.22 -1.7 5,117,876 - Psyr_4291 0.22 +0.6 5,118,111 + Psyr_4291 0.86 -1.0 5,118,111 + Psyr_4291 0.86 +1.5 5,118,111 + Psyr_4291 0.86 +0.0 5,118,111 + Psyr_4291 0.86 +0.3 5,118,111 + Psyr_4291 0.86 +0.7 5,118,111 + Psyr_4291 0.86 -0.7 5,118,111 + Psyr_4291 0.86 +0.9 5,118,111 + Psyr_4291 0.86 +0.0 5,118,111 + Psyr_4291 0.86 -0.8 5,118,111 + Psyr_4291 0.86 -0.6 5,118,111 + Psyr_4291 0.86 +1.4 5,118,111 + Psyr_4291 0.86 -0.1 5,118,111 + Psyr_4291 0.86 +0.7 5,118,111 + Psyr_4291 0.86 +0.5 5,118,111 + Psyr_4291 0.86 -0.6 5,118,769 + -2.3 5,118,769 + -0.1 5,118,769 + +0.4 5,118,769 + -0.7 5,118,769 + -1.9 5,118,769 + -1.0 5,118,769 + -0.9 5,118,769 + +0.8 5,118,769 + +0.6 5,118,769 + +2.3 5,118,769 + +1.5 5,118,769 + -0.2 5,118,769 + -0.5 5,118,769 + -1.5 5,118,770 - +0.5 5,118,770 - -0.4 5,118,770 - +0.4 5,118,770 - -0.2 5,118,770 - -0.7 5,118,770 - +1.2 5,118,771 + -0.7 5,118,771 + +0.0 5,118,771 + +0.1 5,118,771 + +0.6 5,118,771 + +0.1 5,118,771 + -0.9 5,118,772 - +1.4 5,118,772 - +0.5 5,118,772 - -0.2 5,118,772 - -0.0 5,118,772 - +0.2 5,118,772 - -0.1 5,118,773 + +0.8 5,118,773 + +0.5 5,118,773 + -0.3 5,118,773 + -1.7 5,118,773 + +0.8 5,118,774 - -0.4 5,118,774 - +0.3 5,118,774 - +0.1 5,118,783 + -0.3 5,118,783 + -1.5 5,118,783 + +1.3 5,118,783 + -0.4 5,118,784 - -0.4 5,118,784 - -1.1 5,118,834 - -2.4 5,118,834 - -1.8 5,118,946 + +0.3 5,118,946 + -1.8 5,118,946 + +0.6 5,118,946 + -1.3 5,118,946 + +0.3 5,118,948 + -0.3 5,118,948 + -2.3 5,118,948 + -0.7 5,118,948 + +1.6 5,118,960 + -1.1 5,118,960 + -1.3 5,118,960 + -0.6 5,118,960 + -0.2 5,119,026 + +0.7
Or see this region's nucleotide sequence