Experiment: KB with Isovanillin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1513 and Psyr_1514 overlap by 11 nucleotides Psyr_1514 and Psyr_1515 overlap by 4 nucleotides Psyr_1515 and Psyr_1516 overlap by 11 nucleotides
Psyr_1513: Psyr_1513 - type II secretion system protein, at 1,699,012 to 1,700,103
_1513
Psyr_1514: Psyr_1514 - type II secretion system protein E, at 1,700,093 to 1,701,724
_1514
Psyr_1515: Psyr_1515 - hypothetical protein, at 1,701,721 to 1,702,323
_1515
Psyr_1516: Psyr_1516 - hypothetical protein, at 1,702,313 to 1,703,671
_1516
Position (kb) 1700
1701
1702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1699.147 kb on + strand, within Psyr_1513 at 1699.148 kb on - strand, within Psyr_1513 at 1699.264 kb on + strand, within Psyr_1513 at 1699.264 kb on + strand, within Psyr_1513 at 1699.264 kb on + strand, within Psyr_1513 at 1699.265 kb on - strand, within Psyr_1513 at 1699.265 kb on - strand, within Psyr_1513 at 1699.265 kb on - strand, within Psyr_1513 at 1699.265 kb on - strand, within Psyr_1513 at 1699.265 kb on - strand, within Psyr_1513 at 1699.351 kb on + strand, within Psyr_1513 at 1699.439 kb on + strand, within Psyr_1513 at 1699.439 kb on + strand, within Psyr_1513 at 1699.439 kb on + strand at 1699.439 kb on + strand, within Psyr_1513 at 1699.440 kb on - strand, within Psyr_1513 at 1699.440 kb on - strand, within Psyr_1513 at 1699.440 kb on - strand, within Psyr_1513 at 1699.440 kb on - strand, within Psyr_1513 at 1699.494 kb on - strand, within Psyr_1513 at 1699.560 kb on + strand, within Psyr_1513 at 1699.561 kb on - strand, within Psyr_1513 at 1699.561 kb on - strand, within Psyr_1513 at 1699.660 kb on + strand, within Psyr_1513 at 1699.661 kb on - strand, within Psyr_1513 at 1699.673 kb on + strand, within Psyr_1513 at 1699.674 kb on - strand, within Psyr_1513 at 1699.674 kb on - strand, within Psyr_1513 at 1699.674 kb on - strand, within Psyr_1513 at 1699.674 kb on - strand, within Psyr_1513 at 1699.842 kb on + strand, within Psyr_1513 at 1699.888 kb on + strand, within Psyr_1513 at 1699.888 kb on + strand, within Psyr_1513 at 1699.895 kb on + strand, within Psyr_1513 at 1699.895 kb on + strand, within Psyr_1513 at 1699.943 kb on + strand, within Psyr_1513 at 1699.943 kb on + strand, within Psyr_1513 at 1699.943 kb on + strand at 1699.943 kb on + strand, within Psyr_1513 at 1699.944 kb on - strand, within Psyr_1513 at 1699.944 kb on - strand, within Psyr_1513 at 1699.944 kb on - strand, within Psyr_1513 at 1699.944 kb on - strand, within Psyr_1513 at 1699.944 kb on - strand, within Psyr_1513 at 1699.956 kb on + strand, within Psyr_1513 at 1699.956 kb on + strand, within Psyr_1513 at 1700.054 kb on + strand at 1700.054 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.065 kb on + strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.066 kb on - strand at 1700.094 kb on + strand at 1700.095 kb on - strand at 1700.095 kb on - strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.139 kb on + strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.140 kb on - strand at 1700.200 kb on + strand at 1700.200 kb on + strand at 1700.200 kb on + strand at 1700.201 kb on - strand at 1700.201 kb on - strand at 1700.201 kb on - strand at 1700.204 kb on + strand at 1700.204 kb on + strand at 1700.204 kb on + strand at 1700.205 kb on - strand at 1700.205 kb on - strand at 1700.366 kb on + strand, within Psyr_1514 at 1700.366 kb on + strand, within Psyr_1514 at 1700.449 kb on + strand, within Psyr_1514 at 1700.516 kb on - strand, within Psyr_1514 at 1700.554 kb on + strand, within Psyr_1514 at 1700.554 kb on + strand, within Psyr_1514 at 1700.554 kb on + strand, within Psyr_1514 at 1700.555 kb on - strand, within Psyr_1514 at 1700.555 kb on - strand, within Psyr_1514 at 1700.555 kb on - strand, within Psyr_1514 at 1700.592 kb on - strand, within Psyr_1514 at 1700.688 kb on + strand, within Psyr_1514 at 1700.688 kb on + strand, within Psyr_1514 at 1700.688 kb on + strand, within Psyr_1514 at 1700.688 kb on + strand, within Psyr_1514 at 1700.688 kb on + strand, within Psyr_1514 at 1700.688 kb on + strand, within Psyr_1514 at 1700.689 kb on - strand, within Psyr_1514 at 1700.689 kb on - strand, within Psyr_1514 at 1700.689 kb on - strand, within Psyr_1514 at 1700.696 kb on + strand, within Psyr_1514 at 1700.696 kb on + strand, within Psyr_1514 at 1700.697 kb on - strand, within Psyr_1514 at 1700.697 kb on - strand, within Psyr_1514 at 1700.697 kb on - strand, within Psyr_1514 at 1700.725 kb on + strand, within Psyr_1514 at 1700.725 kb on + strand, within Psyr_1514 at 1700.812 kb on + strand, within Psyr_1514 at 1700.900 kb on + strand, within Psyr_1514 at 1700.900 kb on + strand, within Psyr_1514 at 1700.900 kb on + strand, within Psyr_1514 at 1700.900 kb on + strand, within Psyr_1514 at 1700.901 kb on - strand, within Psyr_1514 at 1701.000 kb on + strand, within Psyr_1514 at 1701.000 kb on + strand, within Psyr_1514 at 1701.000 kb on + strand, within Psyr_1514 at 1701.000 kb on + strand, within Psyr_1514 at 1701.001 kb on - strand, within Psyr_1514 at 1701.020 kb on + strand, within Psyr_1514 at 1701.020 kb on + strand, within Psyr_1514 at 1701.051 kb on - strand, within Psyr_1514 at 1701.126 kb on + strand, within Psyr_1514 at 1701.127 kb on - strand, within Psyr_1514 at 1701.127 kb on - strand, within Psyr_1514 at 1701.130 kb on - strand, within Psyr_1514 at 1701.130 kb on - strand, within Psyr_1514 at 1701.130 kb on - strand, within Psyr_1514 at 1701.246 kb on + strand, within Psyr_1514 at 1701.246 kb on + strand, within Psyr_1514 at 1701.247 kb on - strand, within Psyr_1514 at 1701.247 kb on - strand, within Psyr_1514 at 1701.247 kb on - strand, within Psyr_1514 at 1701.247 kb on - strand, within Psyr_1514 at 1701.314 kb on - strand, within Psyr_1514 at 1701.314 kb on - strand, within Psyr_1514 at 1701.340 kb on + strand, within Psyr_1514 at 1701.347 kb on + strand, within Psyr_1514 at 1701.347 kb on + strand, within Psyr_1514 at 1701.348 kb on - strand, within Psyr_1514 at 1701.348 kb on - strand, within Psyr_1514 at 1701.349 kb on + strand, within Psyr_1514 at 1701.349 kb on + strand, within Psyr_1514 at 1701.349 kb on + strand, within Psyr_1514 at 1701.349 kb on + strand, within Psyr_1514 at 1701.349 kb on + strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.350 kb on - strand, within Psyr_1514 at 1701.454 kb on + strand, within Psyr_1514 at 1701.454 kb on + strand, within Psyr_1514 at 1701.455 kb on - strand, within Psyr_1514 at 1701.455 kb on - strand, within Psyr_1514 at 1701.455 kb on - strand, within Psyr_1514 at 1701.468 kb on + strand, within Psyr_1514 at 1701.468 kb on + strand, within Psyr_1514 at 1701.468 kb on + strand, within Psyr_1514 at 1701.468 kb on + strand, within Psyr_1514 at 1701.469 kb on - strand, within Psyr_1514 at 1701.469 kb on - strand, within Psyr_1514 at 1701.469 kb on - strand, within Psyr_1514 at 1701.469 kb on - strand, within Psyr_1514 at 1701.469 kb on - strand, within Psyr_1514 at 1701.534 kb on - strand, within Psyr_1514 at 1701.856 kb on + strand, within Psyr_1515 at 1701.856 kb on + strand, within Psyr_1515 at 1701.857 kb on - strand, within Psyr_1515 at 1701.914 kb on - strand, within Psyr_1515 at 1701.914 kb on - strand, within Psyr_1515 at 1701.914 kb on - strand, within Psyr_1515 at 1701.942 kb on + strand, within Psyr_1515 at 1701.982 kb on + strand, within Psyr_1515 at 1701.993 kb on - strand, within Psyr_1515 at 1701.993 kb on - strand, within Psyr_1515 at 1701.993 kb on - strand, within Psyr_1515 at 1701.993 kb on - strand, within Psyr_1515 at 1702.073 kb on + strand, within Psyr_1515 at 1702.073 kb on + strand, within Psyr_1515 at 1702.086 kb on + strand, within Psyr_1515 at 1702.282 kb on + strand at 1702.282 kb on + strand at 1702.282 kb on + strand at 1702.283 kb on - strand at 1702.283 kb on - strand at 1702.283 kb on - strand at 1702.323 kb on + strand at 1702.323 kb on + strand at 1702.323 kb on + strand at 1702.323 kb on + strand at 1702.323 kb on + strand at 1702.323 kb on + strand at 1702.324 kb on - strand at 1702.324 kb on - strand at 1702.324 kb on - strand at 1702.324 kb on - strand at 1702.324 kb on - strand at 1702.324 kb on - strand at 1702.324 kb on - strand at 1702.334 kb on + strand at 1702.335 kb on - strand at 1702.349 kb on + strand at 1702.538 kb on + strand, within Psyr_1516 at 1702.539 kb on - strand, within Psyr_1516 at 1702.696 kb on + strand, within Psyr_1516 at 1702.707 kb on + strand, within Psyr_1516
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isovanillin 10 mM remove 1,699,147 + Psyr_1513 0.12 +1.1 1,699,148 - Psyr_1513 0.12 -0.3 1,699,264 + Psyr_1513 0.23 +1.2 1,699,264 + Psyr_1513 0.23 +1.4 1,699,264 + Psyr_1513 0.23 +0.7 1,699,265 - Psyr_1513 0.23 -0.9 1,699,265 - Psyr_1513 0.23 -0.6 1,699,265 - Psyr_1513 0.23 -0.8 1,699,265 - Psyr_1513 0.23 +0.0 1,699,265 - Psyr_1513 0.23 +1.4 1,699,351 + Psyr_1513 0.31 -0.7 1,699,439 + Psyr_1513 0.39 -1.9 1,699,439 + Psyr_1513 0.39 -1.3 1,699,439 + +0.4 1,699,439 + Psyr_1513 0.39 -0.0 1,699,440 - Psyr_1513 0.39 +1.8 1,699,440 - Psyr_1513 0.39 -0.5 1,699,440 - Psyr_1513 0.39 -1.9 1,699,440 - Psyr_1513 0.39 -1.4 1,699,494 - Psyr_1513 0.44 -0.6 1,699,560 + Psyr_1513 0.50 +0.7 1,699,561 - Psyr_1513 0.50 +0.2 1,699,561 - Psyr_1513 0.50 -1.2 1,699,660 + Psyr_1513 0.59 +0.4 1,699,661 - Psyr_1513 0.59 -0.8 1,699,673 + Psyr_1513 0.61 -0.2 1,699,674 - Psyr_1513 0.61 -1.4 1,699,674 - Psyr_1513 0.61 -0.6 1,699,674 - Psyr_1513 0.61 +0.2 1,699,674 - Psyr_1513 0.61 -2.1 1,699,842 + Psyr_1513 0.76 +0.2 1,699,888 + Psyr_1513 0.80 -1.4 1,699,888 + Psyr_1513 0.80 +1.2 1,699,895 + Psyr_1513 0.81 -0.2 1,699,895 + Psyr_1513 0.81 +0.4 1,699,943 + Psyr_1513 0.85 +0.4 1,699,943 + Psyr_1513 0.85 +0.4 1,699,943 + +1.4 1,699,943 + Psyr_1513 0.85 +1.0 1,699,944 - Psyr_1513 0.85 +2.3 1,699,944 - Psyr_1513 0.85 +0.9 1,699,944 - Psyr_1513 0.85 +0.3 1,699,944 - Psyr_1513 0.85 -0.7 1,699,944 - Psyr_1513 0.85 -3.4 1,699,956 + Psyr_1513 0.86 +0.4 1,699,956 + Psyr_1513 0.86 +0.3 1,700,054 + -0.7 1,700,054 + +1.4 1,700,065 + -0.2 1,700,065 + -2.5 1,700,065 + -0.2 1,700,065 + +0.0 1,700,065 + -0.3 1,700,065 + +1.5 1,700,065 + -0.6 1,700,065 + +1.4 1,700,066 - -0.6 1,700,066 - -0.5 1,700,066 - +1.1 1,700,066 - -0.1 1,700,066 - -1.9 1,700,066 - +0.4 1,700,066 - -1.1 1,700,066 - -0.4 1,700,094 + +0.5 1,700,095 - -1.1 1,700,095 - -1.8 1,700,139 + +0.0 1,700,139 + -1.8 1,700,139 + -0.4 1,700,139 + -0.7 1,700,139 + -0.2 1,700,139 + -2.4 1,700,139 + -1.6 1,700,139 + -2.0 1,700,139 + +0.4 1,700,139 + +0.8 1,700,139 + +0.0 1,700,139 + -2.2 1,700,139 + +0.1 1,700,140 - +0.3 1,700,140 - -0.5 1,700,140 - +2.0 1,700,140 - +0.3 1,700,140 - -1.1 1,700,140 - +0.4 1,700,140 - +0.8 1,700,140 - -1.5 1,700,140 - +0.0 1,700,140 - -0.1 1,700,140 - +1.1 1,700,200 + +1.9 1,700,200 + -0.9 1,700,200 + +0.4 1,700,201 - +1.1 1,700,201 - +0.7 1,700,201 - +0.4 1,700,204 + +1.4 1,700,204 + +0.3 1,700,204 + +0.6 1,700,205 - +0.3 1,700,205 - +0.0 1,700,366 + Psyr_1514 0.17 +0.4 1,700,366 + Psyr_1514 0.17 -0.1 1,700,449 + Psyr_1514 0.22 -1.1 1,700,516 - Psyr_1514 0.26 +0.8 1,700,554 + Psyr_1514 0.28 -0.3 1,700,554 + Psyr_1514 0.28 -0.6 1,700,554 + Psyr_1514 0.28 -0.6 1,700,555 - Psyr_1514 0.28 +0.4 1,700,555 - Psyr_1514 0.28 -2.4 1,700,555 - Psyr_1514 0.28 -0.9 1,700,592 - Psyr_1514 0.31 -1.3 1,700,688 + Psyr_1514 0.36 -1.3 1,700,688 + Psyr_1514 0.36 +1.4 1,700,688 + Psyr_1514 0.36 -0.7 1,700,688 + Psyr_1514 0.36 -0.4 1,700,688 + Psyr_1514 0.36 -0.1 1,700,688 + Psyr_1514 0.36 -0.6 1,700,689 - Psyr_1514 0.37 -1.5 1,700,689 - Psyr_1514 0.37 -1.2 1,700,689 - Psyr_1514 0.37 -0.0 1,700,696 + Psyr_1514 0.37 +0.4 1,700,696 + Psyr_1514 0.37 -1.0 1,700,697 - Psyr_1514 0.37 +1.1 1,700,697 - Psyr_1514 0.37 +1.8 1,700,697 - Psyr_1514 0.37 -0.6 1,700,725 + Psyr_1514 0.39 -0.9 1,700,725 + Psyr_1514 0.39 +0.4 1,700,812 + Psyr_1514 0.44 +0.6 1,700,900 + Psyr_1514 0.49 -2.2 1,700,900 + Psyr_1514 0.49 -0.1 1,700,900 + Psyr_1514 0.49 +0.6 1,700,900 + Psyr_1514 0.49 -1.6 1,700,901 - Psyr_1514 0.50 -0.6 1,701,000 + Psyr_1514 0.56 -1.6 1,701,000 + Psyr_1514 0.56 -0.5 1,701,000 + Psyr_1514 0.56 -0.3 1,701,000 + Psyr_1514 0.56 +1.4 1,701,001 - Psyr_1514 0.56 -1.4 1,701,020 + Psyr_1514 0.57 +0.7 1,701,020 + Psyr_1514 0.57 -0.0 1,701,051 - Psyr_1514 0.59 -1.5 1,701,126 + Psyr_1514 0.63 -0.4 1,701,127 - Psyr_1514 0.63 +0.8 1,701,127 - Psyr_1514 0.63 -0.2 1,701,130 - Psyr_1514 0.64 +0.4 1,701,130 - Psyr_1514 0.64 -0.4 1,701,130 - Psyr_1514 0.64 +0.2 1,701,246 + Psyr_1514 0.71 -0.6 1,701,246 + Psyr_1514 0.71 +0.4 1,701,247 - Psyr_1514 0.71 -0.7 1,701,247 - Psyr_1514 0.71 -1.3 1,701,247 - Psyr_1514 0.71 +0.4 1,701,247 - Psyr_1514 0.71 +0.5 1,701,314 - Psyr_1514 0.75 +0.4 1,701,314 - Psyr_1514 0.75 +1.4 1,701,340 + Psyr_1514 0.76 +0.7 1,701,347 + Psyr_1514 0.77 +1.0 1,701,347 + Psyr_1514 0.77 +1.2 1,701,348 - Psyr_1514 0.77 +1.4 1,701,348 - Psyr_1514 0.77 -0.1 1,701,349 + Psyr_1514 0.77 -0.9 1,701,349 + Psyr_1514 0.77 -0.2 1,701,349 + Psyr_1514 0.77 -0.4 1,701,349 + Psyr_1514 0.77 -0.3 1,701,349 + Psyr_1514 0.77 -0.2 1,701,350 - Psyr_1514 0.77 -0.5 1,701,350 - Psyr_1514 0.77 -1.6 1,701,350 - Psyr_1514 0.77 +0.3 1,701,350 - Psyr_1514 0.77 +2.4 1,701,350 - Psyr_1514 0.77 -0.2 1,701,350 - Psyr_1514 0.77 -2.0 1,701,350 - Psyr_1514 0.77 -1.4 1,701,454 + Psyr_1514 0.83 -1.5 1,701,454 + Psyr_1514 0.83 +1.8 1,701,455 - Psyr_1514 0.83 +2.0 1,701,455 - Psyr_1514 0.83 -1.5 1,701,455 - Psyr_1514 0.83 +0.3 1,701,468 + Psyr_1514 0.84 +0.3 1,701,468 + Psyr_1514 0.84 -1.3 1,701,468 + Psyr_1514 0.84 -1.5 1,701,468 + Psyr_1514 0.84 +2.7 1,701,469 - Psyr_1514 0.84 +0.6 1,701,469 - Psyr_1514 0.84 +0.7 1,701,469 - Psyr_1514 0.84 -1.9 1,701,469 - Psyr_1514 0.84 -0.2 1,701,469 - Psyr_1514 0.84 -2.0 1,701,534 - Psyr_1514 0.88 -0.6 1,701,856 + Psyr_1515 0.22 -0.6 1,701,856 + Psyr_1515 0.22 +0.1 1,701,857 - Psyr_1515 0.23 -1.0 1,701,914 - Psyr_1515 0.32 -0.5 1,701,914 - Psyr_1515 0.32 +0.0 1,701,914 - Psyr_1515 0.32 +0.8 1,701,942 + Psyr_1515 0.37 +0.8 1,701,982 + Psyr_1515 0.43 -0.5 1,701,993 - Psyr_1515 0.45 +0.2 1,701,993 - Psyr_1515 0.45 +0.7 1,701,993 - Psyr_1515 0.45 +0.3 1,701,993 - Psyr_1515 0.45 +0.4 1,702,073 + Psyr_1515 0.58 -1.6 1,702,073 + Psyr_1515 0.58 +0.1 1,702,086 + Psyr_1515 0.61 +0.2 1,702,282 + +0.6 1,702,282 + +0.1 1,702,282 + +1.2 1,702,283 - +1.4 1,702,283 - +0.9 1,702,283 - -1.2 1,702,323 + -0.6 1,702,323 + +0.0 1,702,323 + +0.4 1,702,323 + +0.4 1,702,323 + +0.7 1,702,323 + -1.6 1,702,324 - -1.0 1,702,324 - -2.2 1,702,324 - -0.6 1,702,324 - +0.1 1,702,324 - -3.0 1,702,324 - -1.3 1,702,324 - -0.6 1,702,334 + +1.3 1,702,335 - -1.6 1,702,349 + +0.5 1,702,538 + Psyr_1516 0.17 -0.2 1,702,539 - Psyr_1516 0.17 +0.2 1,702,696 + Psyr_1516 0.28 -0.0 1,702,707 + Psyr_1516 0.29 +0.4
Or see this region's nucleotide sequence