Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1182

Experiment: KB with Isovanillin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Isovanillin 10 mM
1,334,556	+		Psyr_1180	0.67	+0.7
1,334,556	+		Psyr_1180	0.67	-1.2
1,334,556	+		Psyr_1180	0.67	-1.5
1,334,556	+		Psyr_1180	0.67	-0.0
1,334,557	-		Psyr_1180	0.68	+1.3
1,334,557	-		Psyr_1180	0.68	+1.3
1,334,666	-				-1.5
1,334,738	-				-0.3
1,334,762	+				-0.4
1,334,762	+				+0.5
1,334,762	+				+0.9
1,334,762	+				-1.9
1,334,762	+				-0.1
1,334,763	-				+0.3
1,334,763	-				-1.3
1,334,763	-				-2.0
1,334,763	-				-1.3
1,334,873	+		Psyr_1181	0.30	-0.5
1,334,949	+		Psyr_1181	0.56	-0.3
1,334,950	-		Psyr_1181	0.56	+0.4
1,334,950	-		Psyr_1181	0.56	+0.9
1,335,011	+		Psyr_1181	0.77	-0.6
1,335,011	+		Psyr_1181	0.77	+0.5
1,335,011	+		Psyr_1181	0.77	-0.3
1,335,011	+		Psyr_1181	0.77	+1.3
1,335,011	+		Psyr_1181	0.77	+0.2
1,335,011	+		Psyr_1181	0.77	-0.1
1,335,011	+		Psyr_1181	0.77	+1.6
1,335,011	+		Psyr_1181	0.77	-0.1
1,335,012	-		Psyr_1181	0.78	-0.4
1,335,012	-		Psyr_1181	0.78	+1.3
1,335,012	-		Psyr_1181	0.78	-0.1
1,335,012	-		Psyr_1181	0.78	-0.6
1,335,012	-		Psyr_1181	0.78	+0.1
1,335,012	-		Psyr_1181	0.78	+0.5
1,335,012	-		Psyr_1181	0.78	-2.0
1,335,012	-		Psyr_1181	0.78	-0.3
1,335,012	-		Psyr_1181	0.78	-0.3
1,335,055	+				-0.1
1,335,075	+				-0.9
1,335,075	+				-0.4
1,335,075	+				+0.1
1,335,075	+				+1.2
1,335,075	+				+0.7
1,335,075	+				+1.0
1,335,075	+				-1.0
1,335,075	+				+0.5
1,335,075	+				-0.3
1,335,075	+				+0.9
1,335,075	+				-0.8
1,335,075	+				+0.6
1,335,075	+				+0.9
1,335,075	+				-0.1
1,335,075	+				-0.1
1,335,075	+				-2.2
1,335,075	+				-0.2
1,335,075	+				+1.1
1,335,075	+				+0.5
1,335,075	+				+0.8
1,335,076	-				-1.1
1,335,076	-				-1.7
1,335,076	-				+0.6
1,335,076	-				-1.7
1,335,076	-				-0.3
1,335,076	-				+0.6
1,335,076	-				+0.5
1,335,076	-				+0.8
1,335,076	-				-0.4
1,335,076	-				-0.7
1,335,076	-				-2.0
1,335,076	-				-0.1
1,335,076	-				-2.7
1,335,076	-				-0.5
1,335,076	-				-0.7
1,335,076	-				+0.3
1,335,076	-				-0.3
1,335,076	-				-1.6
1,335,076	-				+1.1
1,335,101	+				+0.7
1,335,101	+				+1.6
1,335,101	+				+0.6
1,335,101	+				+0.8
1,335,101	+				-1.9
1,335,101	+				+0.4
1,335,101	+				-0.3
1,335,101	+				-3.6
1,335,101	+				+0.7
1,335,101	+				+0.1
1,335,101	+				-0.3
1,335,102	-				+1.0
1,335,102	-				-1.3
1,335,102	-				+2.9
1,335,118	+				-0.9
1,335,119	-				+0.6
1,335,178	+				-0.1
1,335,178	+				-0.0
1,335,179	-				+0.4
1,335,362	+				-0.6
1,335,362	+				+0.8
1,335,363	-				-1.9
1,335,363	-				-1.3
1,335,400	+				+0.1
1,335,400	+				-0.9
1,335,400	+				-1.9
1,335,400	+				+0.6
1,335,400	+				-1.9
1,335,401	-				-2.5
1,335,401	-				+0.7
1,335,401	-				+0.3
1,335,431	+				+0.1
1,335,431	+				-0.2
1,335,431	+				-0.3
1,335,431	+				+0.5
1,335,432	-				-0.6
1,335,432	-				+0.3
1,335,434	-				-0.3
1,335,434	-				+0.4
1,335,447	-				-0.4
1,335,450	+				-0.1
1,335,451	-				-0.6
1,335,451	-				-0.1
1,335,778	+		Psyr_1182	0.32	+0.3
1,335,784	+		Psyr_1182	0.33	-0.2
1,335,785	-		Psyr_1182	0.33	+0.6
1,335,785	-		Psyr_1182	0.33	-0.7
1,335,936	-		Psyr_1182	0.49	+0.2
1,335,936	-		Psyr_1182	0.49	-1.0
1,335,936	-		Psyr_1182	0.49	-0.2
1,335,953	+		Psyr_1182	0.51	-1.7
1,335,954	-		Psyr_1182	0.51	-0.2
1,336,055	-		Psyr_1182	0.62	-0.0
1,336,055	-		Psyr_1182	0.62	-1.9
1,336,077	+		Psyr_1182	0.64	-0.7
1,336,078	-		Psyr_1182	0.64	+0.2
1,336,078	-		Psyr_1182	0.64	-0.7
1,336,131	+		Psyr_1182	0.70	-0.4
1,336,131	+		Psyr_1182	0.70	-0.4
1,336,144	+		Psyr_1182	0.71	+0.1
1,336,204	+		Psyr_1182	0.78	-0.1
1,336,233	+		Psyr_1182	0.81	-1.4
1,336,233	+		Psyr_1182	0.81	+0.2
1,336,234	-		Psyr_1182	0.81	+0.3
1,336,281	+		Psyr_1182	0.86	-2.3
1,336,281	+		Psyr_1182	0.86	-1.0
1,336,281	+		Psyr_1182	0.86	-1.0
1,336,282	-		Psyr_1182	0.86	-1.7
1,336,363	+				-2.1
1,336,363	+				-0.4
1,336,363	+				-1.0
1,336,363	+				-1.9
1,336,363	+				-0.3
1,336,363	+				-2.6
1,336,363	+				+0.2
1,336,363	+				+0.1
1,336,364	-				-2.9
1,336,364	-				-0.9
1,336,364	-				-2.1
1,336,364	-				-0.7
1,336,364	-				+0.3
1,336,364	-				-0.7
1,336,364	-				-0.7
1,336,364	-				-0.1
1,336,364	-				-1.1
1,336,364	-				+1.5
1,336,364	-				-0.1
1,336,483	-				-2.6
1,336,483	-				-1.0
1,336,483	-				+0.8
1,336,497	-				+0.4
1,336,507	+				-1.6
1,336,508	-				-0.6
1,336,508	-				-0.7
1,336,735	+				-0.2
1,336,735	+				-0.7
1,336,735	+				+0.0
1,336,735	+				+0.4
1,336,735	+				-0.4
1,336,735	+				-0.6
1,336,735	+				-0.7
1,336,736	-				+0.6
1,336,736	-				-2.6
1,336,736	-				+0.7
1,336,736	-				+0.5
1,336,736	-				+1.0
1,336,736	-				-0.3
1,336,736	-				+0.5
1,336,743	-				-0.7
1,336,813	-				+1.1
1,336,912	+		Psyr_1183	0.11	+0.1
1,336,912	+		Psyr_1183	0.11	+0.3
1,336,912	+		Psyr_1183	0.11	+0.4
1,336,912	+		Psyr_1183	0.11	-0.1
1,336,912	+		Psyr_1183	0.11	-0.3
1,336,913	-		Psyr_1183	0.11	+3.9
1,336,913	-		Psyr_1183	0.11	+0.6
1,336,913	-		Psyr_1183	0.11	-0.3
1,336,913	-		Psyr_1183	0.11	+0.1
1,337,151	+		Psyr_1183	0.27	+0.2
1,337,151	+		Psyr_1183	0.27	+0.1
1,337,151	+		Psyr_1183	0.27	+0.7
1,337,151	+		Psyr_1183	0.27	+0.4
1,337,151	+		Psyr_1183	0.27	-0.1
1,337,151	+		Psyr_1183	0.27	+0.5
1,337,151	+		Psyr_1183	0.27	+0.2
1,337,151	+		Psyr_1183	0.27	-0.8
1,337,152	-		Psyr_1183	0.27	-1.9
1,337,152	-		Psyr_1183	0.27	+0.6
1,337,152	-		Psyr_1183	0.27	+0.0
1,337,152	-		Psyr_1183	0.27	-0.7
1,337,152	-		Psyr_1183	0.27	+1.2
1,337,292	+		Psyr_1183	0.37	+0.7
1,337,403	+		Psyr_1183	0.44	+1.2
1,337,404	-		Psyr_1183	0.44	-0.3