Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0467

Experiment: KB with Isovanillin 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0466 and Psyr_0467 are separated by 225 nucleotidesPsyr_0467 and Psyr_0468 are separated by 173 nucleotides Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735 _0466 Psyr_0467: Psyr_0467 - Protein of unknown function UPF0153, at 505,961 to 506,416 _0467 Psyr_0468: Psyr_0468 - Aminotransferase, class I and II, at 506,590 to 507,798 _0468 Position (kb) 505 506 507Strain fitness (log2 ratio) -1 0 1 2at 505.044 kb on + strand, within Psyr_0466at 505.119 kb on + strand, within Psyr_0466at 505.119 kb on + strand, within Psyr_0466at 505.120 kb on - strand, within Psyr_0466at 505.120 kb on - strand, within Psyr_0466at 505.120 kb on - strand, within Psyr_0466at 505.120 kb on - strand, within Psyr_0466at 505.187 kb on + strand, within Psyr_0466at 505.187 kb on + strand, within Psyr_0466at 505.188 kb on - strand, within Psyr_0466at 505.188 kb on - strand, within Psyr_0466at 505.254 kb on + strand, within Psyr_0466at 505.383 kb on + strand, within Psyr_0466at 505.384 kb on - strand, within Psyr_0466at 505.536 kb on - strand, within Psyr_0466at 505.740 kb on + strandat 505.788 kb on + strandat 505.789 kb on - strandat 506.037 kb on + strand, within Psyr_0467at 506.037 kb on + strand, within Psyr_0467at 506.037 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.136 kb on + strand, within Psyr_0467at 506.137 kb on - strand, within Psyr_0467at 506.194 kb on - strand, within Psyr_0467at 506.358 kb on + strand, within Psyr_0467at 506.358 kb on + strand, within Psyr_0467at 506.359 kb on - strand, within Psyr_0467at 506.359 kb on - strand, within Psyr_0467at 506.786 kb on + strand, within Psyr_0468at 506.786 kb on + strand, within Psyr_0468at 506.787 kb on - strand, within Psyr_0468at 506.787 kb on - strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.872 kb on + strand, within Psyr_0468at 506.873 kb on - strand, within Psyr_0468at 506.971 kb on - strand, within Psyr_0468at 506.976 kb on - strand, within Psyr_0468at 506.984 kb on + strand, within Psyr_0468at 506.985 kb on - strand, within Psyr_0468at 507.062 kb on + strand, within Psyr_0468at 507.062 kb on + strand, within Psyr_0468at 507.062 kb on + strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.147 kb on - strand, within Psyr_0468at 507.191 kb on + strand, within Psyr_0468at 507.192 kb on - strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isovanillin 10 mM
remove
505,044 + Psyr_0466 0.24 +0.6
505,119 + Psyr_0466 0.32 -0.3
505,119 + Psyr_0466 0.32 +0.6
505,120 - Psyr_0466 0.32 -1.1
505,120 - Psyr_0466 0.32 -0.1
505,120 - Psyr_0466 0.32 -0.3
505,120 - Psyr_0466 0.32 +0.1
505,187 + Psyr_0466 0.39 -0.2
505,187 + Psyr_0466 0.39 +0.4
505,188 - Psyr_0466 0.40 -1.1
505,188 - Psyr_0466 0.40 +1.4
505,254 + Psyr_0466 0.47 -0.3
505,383 + Psyr_0466 0.61 +0.5
505,384 - Psyr_0466 0.61 -0.8
505,536 - Psyr_0466 0.78 -0.2
505,740 + -0.2
505,788 + -0.4
505,789 - -0.4
506,037 + Psyr_0467 0.17 +1.3
506,037 + Psyr_0467 0.17 -1.0
506,037 + Psyr_0467 0.17 -0.4
506,103 + Psyr_0467 0.31 -0.1
506,103 + Psyr_0467 0.31 +0.4
506,103 + Psyr_0467 0.31 +0.2
506,103 + Psyr_0467 0.31 -0.1
506,103 + Psyr_0467 0.31 -0.0
506,103 + Psyr_0467 0.31 +0.4
506,104 - Psyr_0467 0.31 +0.1
506,104 - Psyr_0467 0.31 -0.1
506,104 - Psyr_0467 0.31 -0.3
506,104 - Psyr_0467 0.31 +1.4
506,104 - Psyr_0467 0.31 +1.6
506,104 - Psyr_0467 0.31 +0.3
506,104 - Psyr_0467 0.31 -0.6
506,136 + Psyr_0467 0.38 -0.4
506,137 - Psyr_0467 0.39 +0.5
506,194 - Psyr_0467 0.51 +0.8
506,358 + Psyr_0467 0.87 +0.3
506,358 + Psyr_0467 0.87 -0.4
506,359 - Psyr_0467 0.87 +1.3
506,359 - Psyr_0467 0.87 +1.1
506,786 + Psyr_0468 0.16 +1.0
506,786 + Psyr_0468 0.16 +1.5
506,787 - Psyr_0468 0.16 +0.1
506,787 - Psyr_0468 0.16 +0.0
506,813 + Psyr_0468 0.18 +1.6
506,813 + Psyr_0468 0.18 -0.9
506,813 + Psyr_0468 0.18 -0.3
506,813 + Psyr_0468 0.18 +0.1
506,813 + Psyr_0468 0.18 +0.8
506,813 + Psyr_0468 0.18 +0.4
506,813 + Psyr_0468 0.18 -0.1
506,813 + Psyr_0468 0.18 +0.3
506,814 - Psyr_0468 0.19 -0.6
506,814 - Psyr_0468 0.19 +0.5
506,814 - Psyr_0468 0.19 -0.2
506,814 - Psyr_0468 0.19 -1.0
506,814 - Psyr_0468 0.19 -1.1
506,814 - Psyr_0468 0.19 -0.2
506,814 - Psyr_0468 0.19 -1.5
506,814 - Psyr_0468 0.19 -1.5
506,814 - Psyr_0468 0.19 +1.9
506,872 + Psyr_0468 0.23 -0.6
506,873 - Psyr_0468 0.23 +1.2
506,971 - Psyr_0468 0.32 +1.1
506,976 - Psyr_0468 0.32 -0.5
506,984 + Psyr_0468 0.33 -0.7
506,985 - Psyr_0468 0.33 -1.1
507,062 + Psyr_0468 0.39 -0.0
507,062 + Psyr_0468 0.39 +0.2
507,062 + Psyr_0468 0.39 +0.3
507,063 - Psyr_0468 0.39 +0.2
507,063 - Psyr_0468 0.39 -1.7
507,063 - Psyr_0468 0.39 -0.9
507,063 - Psyr_0468 0.39 +1.2
507,063 - Psyr_0468 0.39 -0.6
507,063 - Psyr_0468 0.39 -0.5
507,063 - Psyr_0468 0.39 -1.3
507,147 - Psyr_0468 0.46 +2.5
507,191 + Psyr_0468 0.50 +1.0
507,192 - Psyr_0468 0.50 +0.6
507,389 + Psyr_0468 0.66 +0.5
507,389 + Psyr_0468 0.66 -1.0
507,389 + Psyr_0468 0.66 +0.6
507,389 + Psyr_0468 0.66 -0.5
507,389 + Psyr_0468 0.66 -0.2
507,389 + Psyr_0468 0.66 +0.5
507,389 + Psyr_0468 0.66 -0.5
507,389 + Psyr_0468 0.66 +2.5
507,389 + Psyr_0468 0.66 +0.7
507,390 - Psyr_0468 0.66 +0.0
507,390 - Psyr_0468 0.66 -0.4
507,390 - Psyr_0468 0.66 -0.2
507,390 - Psyr_0468 0.66 +0.1
507,390 - Psyr_0468 0.66 +1.4
507,390 - Psyr_0468 0.66 -0.3

Or see this region's nucleotide sequence