Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0102

Experiment: KB with Isovanillin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Isovanillin 10 mM
112,931	-				+0.8
112,968	+				+0.7
112,968	+				-1.9
112,968	+				-0.6
112,968	+				+0.7
112,968	+				+1.1
112,968	+				-0.4
112,968	+				+0.8
112,968	+				-0.4
112,968	+				-0.4
112,968	+				+1.5
112,968	+				+0.3
112,968	+				+0.5
112,968	+				+0.2
112,969	-				+0.2
112,969	-				+0.2
112,969	-				+0.0
112,969	-				+1.2
112,969	-				-1.5
112,969	-				-1.4
112,969	-				+0.3
112,969	-				-1.3
112,969	-				-0.8
112,969	-				+0.1
112,994	+				+0.9
112,994	+				+0.7
112,995	-				+0.3
112,996	+				+1.4
112,996	+				-0.9
112,996	+				-0.7
112,997	-				+0.7
112,997	-				-0.9
113,070	+		Psyr_0101	0.17	+0.2
113,070	+		Psyr_0101	0.17	-0.2
113,071	-		Psyr_0101	0.17	+1.5
113,071	-		Psyr_0101	0.17	-0.0
113,072	+		Psyr_0101	0.17	+0.2
113,072	+		Psyr_0101	0.17	+0.1
113,072	+		Psyr_0101	0.17	-0.2
113,072	+		Psyr_0101	0.17	-1.3
113,072	+		Psyr_0101	0.17	+1.1
113,072	+		Psyr_0101	0.17	-0.7
113,072	+		Psyr_0101	0.17	+0.6
113,073	-		Psyr_0101	0.17	-1.4
113,073	-		Psyr_0101	0.17	-1.4
113,073	-		Psyr_0101	0.17	-1.1
113,073	-		Psyr_0101	0.17	+1.1
113,073	-		Psyr_0101	0.17	-0.1
113,073	-		Psyr_0101	0.17	+2.7
113,073	-		Psyr_0101	0.17	-1.7
113,073	-		Psyr_0101	0.17	-0.1
113,093	+		Psyr_0101	0.21	-2.3
113,093	+		Psyr_0101	0.21	-0.3
113,094	-		Psyr_0101	0.21	-0.6
113,131	+		Psyr_0101	0.29	-1.2
113,131	+		Psyr_0101	0.29	+0.2
113,131	+		Psyr_0101	0.29	-0.8
113,131	+		Psyr_0101	0.29	+0.2
113,132	-		Psyr_0101	0.29	-0.3
113,166	+		Psyr_0101	0.36	+0.5
113,166	+		Psyr_0101	0.36	+0.3
113,185	+		Psyr_0101	0.40	+0.3
113,185	+		Psyr_0101	0.40	-1.0
113,186	-		Psyr_0101	0.40	-0.2
113,186	-		Psyr_0101	0.40	-1.8
113,196	-		Psyr_0101	0.42	-0.1
113,325	+		Psyr_0101	0.67	+0.7
113,326	-				-0.1
113,392	+		Psyr_0101	0.81	+0.5
113,392	+		Psyr_0101	0.81	-1.1
113,472	-				+0.0
113,472	-				+1.0
113,472	-				-1.1
113,493	+				+0.6
113,516	-				-0.4
113,523	-				+0.4
113,534	+				-0.4
113,534	+				-2.2
113,535	-				-1.1
113,535	-				-0.2
113,535	-				+0.1
113,654	-				+0.1
113,735	+				-1.5
113,736	-				-1.7
113,737	+				-1.2
113,737	+				-1.1
113,737	+				+0.5
113,737	+				+3.0
113,737	+				+1.6
113,737	+				+0.7
113,737	+				+0.1
113,737	+				-2.6
113,738	-				-2.4
113,738	-				-1.1
113,738	-				-0.7
113,751	+				-2.3
113,751	+				-1.0
113,755	+				+1.8
113,755	+				-0.9
113,755	+				-0.9
113,755	+				-0.9
113,755	+				+0.0
113,755	+				-1.9
113,755	+				+0.5
113,755	+				-0.7
113,755	+				-0.1
113,755	+				-2.1
113,755	+				-1.1
113,755	+				-1.3
113,755	+				-2.5
113,755	+				+1.5
113,755	+				-0.9
113,756	-				-0.3
113,756	-				-0.4
113,756	-				+1.4
113,756	-				-0.0
113,756	-				+0.0
113,756	-				+0.1
113,756	-				-0.6
113,756	-				+0.2
113,756	-				+0.5
113,756	-				-0.2
113,756	-				-0.8
113,793	+				-0.5
113,793	+				+1.1
113,793	+				+0.7
113,794	-				-1.1
113,804	-				+0.5
113,875	+				-0.1
113,875	+				-1.0
113,876	-				-2.8
113,876	-				-0.7
113,876	-				-0.1
113,876	-				+1.1
113,876	-				+0.0
113,876	-				-0.5
113,963	+				+1.5
113,964	-				+0.7
114,021	+		Psyr_0102	0.19	-0.1
114,021	+		Psyr_0102	0.19	-0.7
114,021	+		Psyr_0102	0.19	+1.0
114,021	+		Psyr_0102	0.19	-2.4
114,021	+		Psyr_0102	0.19	-1.3
114,021	+		Psyr_0102	0.19	-0.5
114,021	+		Psyr_0102	0.19	+0.9
114,022	-		Psyr_0102	0.19	-3.2
114,022	-		Psyr_0102	0.19	+1.1
114,022	-		Psyr_0102	0.19	-0.3
114,022	-		Psyr_0102	0.19	+0.6
114,022	-		Psyr_0102	0.19	-0.3
114,022	-		Psyr_0102	0.19	-0.7
114,024	+		Psyr_0102	0.20	+2.9
114,025	-		Psyr_0102	0.20	-0.9
114,025	-		Psyr_0102	0.20	-0.3
114,028	+		Psyr_0102	0.20	-0.1
114,028	+		Psyr_0102	0.20	+0.2
114,029	-		Psyr_0102	0.21	-0.9
114,029	-		Psyr_0102	0.21	-0.6
114,029	-		Psyr_0102	0.21	-0.6
114,086	+		Psyr_0102	0.30	-2.6
114,086	+		Psyr_0102	0.30	-1.0
114,087	-		Psyr_0102	0.30	-0.4
114,119	-		Psyr_0102	0.36	-0.7
114,144	+		Psyr_0102	0.40	+0.2
114,165	-		Psyr_0102	0.43	+0.8
114,224	+		Psyr_0102	0.53	-0.7
114,224	+		Psyr_0102	0.53	-0.9
114,224	+		Psyr_0102	0.53	-0.5
114,225	-		Psyr_0102	0.53	+0.7
114,225	-		Psyr_0102	0.53	-1.1
114,227	+		Psyr_0102	0.54	-0.3
114,228	-		Psyr_0102	0.54	-0.9
114,228	-		Psyr_0102	0.54	+0.1
114,246	-		Psyr_0102	0.57	+0.8
114,269	+		Psyr_0102	0.61	-0.7
114,269	+		Psyr_0102	0.61	-0.1
114,270	-		Psyr_0102	0.61	-0.5
114,311	+		Psyr_0102	0.68	+1.8
114,311	+		Psyr_0102	0.68	+0.5
114,311	+		Psyr_0102	0.68	-0.3
114,360	+		Psyr_0102	0.76	+0.5
114,360	+		Psyr_0102	0.76	+0.6
114,360	+		Psyr_0102	0.76	-1.5
114,360	+		Psyr_0102	0.76	-1.1
114,360	+		Psyr_0102	0.76	+0.5
114,360	+		Psyr_0102	0.76	-1.1
114,360	+		Psyr_0102	0.76	+0.1
114,360	+		Psyr_0102	0.76	-1.2
114,361	-		Psyr_0102	0.76	-2.0
114,361	-		Psyr_0102	0.76	-0.7
114,361	-		Psyr_0102	0.76	+0.8
114,361	-		Psyr_0102	0.76	-2.4
114,390	-		Psyr_0102	0.81	-1.1
114,396	-		Psyr_0102	0.82	+0.2
114,409	+		Psyr_0102	0.84	+0.7
114,410	-		Psyr_0102	0.84	+0.9
114,413	+		Psyr_0102	0.85	-1.2
114,413	+		Psyr_0102	0.85	-1.4
114,414	-		Psyr_0102	0.85	+0.2
114,414	-		Psyr_0102	0.85	+0.5
114,561	-		Psyr_0103	0.12	-0.5
114,625	-		Psyr_0103	0.29	-1.1
114,658	-		Psyr_0103	0.38	+0.1
114,717	+		Psyr_0103	0.54	+0.2
114,717	+		Psyr_0103	0.54	-0.2
114,717	+		Psyr_0103	0.54	+0.1
114,718	-		Psyr_0103	0.54	-0.3
114,718	-		Psyr_0103	0.54	+0.3
114,718	-		Psyr_0103	0.54	-0.1
114,718	-		Psyr_0103	0.54	+0.1
114,718	-		Psyr_0103	0.54	+0.5
114,757	+		Psyr_0103	0.64	-0.9
114,774	-		Psyr_0103	0.69	+0.3
114,808	+		Psyr_0103	0.78	-2.1
114,808	+		Psyr_0103	0.78	-1.7
114,809	-		Psyr_0103	0.78	-0.2
114,909	-				-0.3
114,935	+				-0.2
114,992	+				-1.3
114,993	-				+0.2
114,996	-				+0.7
115,014	+				+0.7
115,015	-				+0.4
115,015	-				+0.1
115,015	-				+0.1
115,015	-				-1.0
115,015	-				+0.0
115,065	+				-0.1
115,066	-				-0.5
115,071	+				-0.0
115,071	+				+0.5
115,071	+				-0.4
115,072	-				+1.3
115,072	-				-0.1
115,072	-				-0.4
115,072	-				-0.6
115,072	-				+0.1
115,072	-				+0.4
115,072	-				+1.7
115,072	-				-0.2
115,072	-				+1.7
115,080	+				-0.3
115,081	-				-0.4
115,150	+				-1.1
115,168	+				+0.6
115,168	+				-2.5
115,169	-				+0.3
115,169	-				-0.6
115,204	+				+1.4
115,204	+				-0.6
115,240	+				-1.0
115,241	-				-0.1
115,241	-				+0.9
115,273	-				+0.8
115,321	+				-0.3
115,322	-				-0.9
115,322	-				-0.0
115,353	+				-0.3
115,353	+				+0.4
115,354	-				+1.5
115,354	-				-0.9
115,371	-				-0.5
115,382	+				-1.5
115,382	+				-0.6
115,383	-				+0.9
115,383	-				+0.4
115,383	-				+0.4
115,418	-				+0.3
115,418	-				-0.9