Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004169 and ABIE53_004170 are separated by 15 nucleotides ABIE53_004170 and ABIE53_004171 are separated by 2 nucleotides ABIE53_004171 and ABIE53_004172 are separated by 1 nucleotides
ABIE53_004169: ABIE53_004169 - oligopeptide transport system substrate-binding protein, at 342,901 to 344,529
_004169
ABIE53_004170: ABIE53_004170 - oligopeptide transport system permease protein, at 344,545 to 345,483
_004170
ABIE53_004171: ABIE53_004171 - oligopeptide transport system permease protein, at 345,486 to 346,400
_004171
ABIE53_004172: ABIE53_004172 - oligopeptide transport system ATP-binding protein, at 346,402 to 347,424
_004172
Position (kb) 345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 344.512 kb on + strand at 344.512 kb on + strand at 344.513 kb on - strand at 344.513 kb on - strand at 344.513 kb on - strand at 344.527 kb on + strand at 344.556 kb on + strand at 344.614 kb on + strand at 344.614 kb on + strand at 344.614 kb on + strand at 344.615 kb on - strand at 344.701 kb on + strand, within ABIE53_004170 at 344.732 kb on - strand, within ABIE53_004170 at 344.741 kb on - strand, within ABIE53_004170 at 345.376 kb on + strand, within ABIE53_004170 at 345.376 kb on + strand, within ABIE53_004170 at 345.377 kb on - strand, within ABIE53_004170 at 345.925 kb on - strand, within ABIE53_004171 at 345.925 kb on - strand, within ABIE53_004171 at 345.936 kb on + strand, within ABIE53_004171 at 345.936 kb on + strand, within ABIE53_004171 at 345.937 kb on - strand, within ABIE53_004171 at 346.164 kb on + strand, within ABIE53_004171 at 346.165 kb on - strand, within ABIE53_004171 at 346.342 kb on - strand at 346.342 kb on - strand at 346.342 kb on - strand at 346.410 kb on - strand at 346.440 kb on + strand at 346.761 kb on + strand, within ABIE53_004172 at 346.761 kb on + strand, within ABIE53_004172 at 346.849 kb on + strand, within ABIE53_004172 at 346.849 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.083 kb on + strand, within ABIE53_004172 at 347.084 kb on - strand, within ABIE53_004172 at 347.084 kb on - strand, within ABIE53_004172 at 347.147 kb on - strand, within ABIE53_004172 at 347.301 kb on + strand, within ABIE53_004172 at 347.301 kb on + strand, within ABIE53_004172 at 347.301 kb on + strand, within ABIE53_004172 at 347.302 kb on - strand, within ABIE53_004172 at 347.302 kb on - strand, within ABIE53_004172 at 347.302 kb on - strand, within ABIE53_004172 at 347.305 kb on + strand, within ABIE53_004172 at 347.305 kb on + strand, within ABIE53_004172 at 347.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 344,512 + -0.4 344,512 + +1.2 344,513 - +0.6 344,513 - -2.1 344,513 - -1.0 344,527 + -0.1 344,556 + +0.1 344,614 + +0.2 344,614 + -1.8 344,614 + +1.2 344,615 - -1.2 344,701 + ABIE53_004170 0.17 +0.9 344,732 - ABIE53_004170 0.20 +0.2 344,741 - ABIE53_004170 0.21 -1.1 345,376 + ABIE53_004170 0.88 -3.7 345,376 + ABIE53_004170 0.88 -1.7 345,377 - ABIE53_004170 0.89 +0.2 345,925 - ABIE53_004171 0.48 -0.1 345,925 - ABIE53_004171 0.48 +2.2 345,936 + ABIE53_004171 0.49 +0.4 345,936 + ABIE53_004171 0.49 +0.3 345,937 - ABIE53_004171 0.49 -0.5 346,164 + ABIE53_004171 0.74 +2.2 346,165 - ABIE53_004171 0.74 -0.4 346,342 - +0.6 346,342 - -0.5 346,342 - +0.3 346,410 - -0.7 346,440 + -0.3 346,761 + ABIE53_004172 0.35 +0.8 346,761 + ABIE53_004172 0.35 -0.4 346,849 + ABIE53_004172 0.44 +0.6 346,849 + ABIE53_004172 0.44 +0.5 347,083 + ABIE53_004172 0.67 +0.2 347,083 + ABIE53_004172 0.67 -0.0 347,083 + ABIE53_004172 0.67 +0.9 347,083 + ABIE53_004172 0.67 +0.5 347,084 - ABIE53_004172 0.67 +1.2 347,084 - ABIE53_004172 0.67 +2.2 347,147 - ABIE53_004172 0.73 -0.2 347,301 + ABIE53_004172 0.88 -1.0 347,301 + ABIE53_004172 0.88 -0.2 347,301 + ABIE53_004172 0.88 -1.4 347,302 - ABIE53_004172 0.88 +1.0 347,302 - ABIE53_004172 0.88 -1.0 347,302 - ABIE53_004172 0.88 +0.3 347,305 + ABIE53_004172 0.88 -0.3 347,305 + ABIE53_004172 0.88 -0.6 347,347 - -1.1
Or see this region's nucleotide sequence