Experiment: Varel_Bryant_medium_Glucose with Spiramycin 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0689 and BT0690 overlap by 4 nucleotides BT0690 and BT0691 are separated by 68 nucleotides BT0691 and BT0692 overlap by 20 nucleotides
BT0689: BT0689 - putative two-component system sensor histidine kinase (NCBI ptt file), at 856,887 to 858,203
BT0689
BT0690: BT0690 - two-component system response regulator (NCBI ptt file), at 858,200 to 859,543
BT0690
BT0691: BT0691 - hypothetical protein (NCBI ptt file), at 859,612 to 860,415
BT0691
BT0692: BT0692 - putative calcineurin superfamily phosphohydrolase (NCBI ptt file), at 860,396 to 861,199
BT0692
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.567 kb on + strand, within BT0689 at 857.676 kb on - strand, within BT0689 at 857.714 kb on + strand, within BT0689 at 857.722 kb on - strand, within BT0689 at 857.747 kb on + strand, within BT0689 at 857.751 kb on + strand, within BT0689 at 858.060 kb on - strand, within BT0689 at 858.064 kb on - strand, within BT0689 at 858.101 kb on - strand at 858.125 kb on + strand at 858.190 kb on - strand at 858.264 kb on - strand at 858.526 kb on - strand, within BT0690 at 858.526 kb on - strand, within BT0690 at 858.606 kb on - strand, within BT0690 at 858.623 kb on - strand, within BT0690 at 858.742 kb on + strand, within BT0690 at 858.801 kb on - strand, within BT0690 at 858.860 kb on - strand, within BT0690 at 859.084 kb on + strand, within BT0690 at 859.084 kb on + strand, within BT0690 at 859.182 kb on - strand, within BT0690 at 859.223 kb on - strand, within BT0690 at 859.311 kb on - strand, within BT0690 at 859.382 kb on + strand, within BT0690 at 859.383 kb on - strand, within BT0690 at 859.413 kb on - strand at 859.413 kb on - strand at 859.505 kb on - strand at 859.514 kb on + strand at 859.537 kb on + strand at 859.589 kb on + strand at 859.670 kb on + strand at 859.697 kb on + strand, within BT0691 at 859.710 kb on + strand, within BT0691 at 859.715 kb on - strand, within BT0691 at 859.758 kb on + strand, within BT0691 at 859.773 kb on - strand, within BT0691 at 859.830 kb on - strand, within BT0691 at 859.880 kb on - strand, within BT0691 at 859.954 kb on - strand, within BT0691 at 859.956 kb on - strand, within BT0691 at 860.089 kb on - strand, within BT0691 at 860.100 kb on - strand, within BT0691 at 860.104 kb on + strand, within BT0691 at 860.156 kb on - strand, within BT0691 at 860.199 kb on - strand, within BT0691 at 860.224 kb on + strand, within BT0691 at 860.250 kb on - strand, within BT0691 at 860.303 kb on + strand, within BT0691 at 860.367 kb on + strand at 860.368 kb on - strand at 860.374 kb on + strand at 860.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Spiramycin 0.2 mM remove 857,567 + BT0689 0.52 +1.1 857,676 - BT0689 0.60 -0.5 857,714 + BT0689 0.63 +0.1 857,722 - BT0689 0.63 +0.1 857,747 + BT0689 0.65 +0.5 857,751 + BT0689 0.66 -0.7 858,060 - BT0689 0.89 -0.8 858,064 - BT0689 0.89 -2.5 858,101 - -0.3 858,125 + +0.1 858,190 - -3.1 858,264 - -0.7 858,526 - BT0690 0.24 -1.5 858,526 - BT0690 0.24 +0.1 858,606 - BT0690 0.30 +1.7 858,623 - BT0690 0.31 +1.1 858,742 + BT0690 0.40 -0.9 858,801 - BT0690 0.45 -1.8 858,860 - BT0690 0.49 -1.6 859,084 + BT0690 0.66 -1.5 859,084 + BT0690 0.66 -1.9 859,182 - BT0690 0.73 -2.3 859,223 - BT0690 0.76 +0.1 859,311 - BT0690 0.83 -1.8 859,382 + BT0690 0.88 +1.7 859,383 - BT0690 0.88 -1.5 859,413 - -2.4 859,413 - -1.9 859,505 - -0.9 859,514 + -0.3 859,537 + -2.7 859,589 + +1.7 859,670 + +0.1 859,697 + BT0691 0.11 -0.3 859,710 + BT0691 0.12 +0.1 859,715 - BT0691 0.13 +0.3 859,758 + BT0691 0.18 -1.9 859,773 - BT0691 0.20 -0.4 859,830 - BT0691 0.27 -0.5 859,880 - BT0691 0.33 -1.9 859,954 - BT0691 0.43 -1.6 859,956 - BT0691 0.43 -1.8 860,089 - BT0691 0.59 -1.9 860,100 - BT0691 0.61 -1.5 860,104 + BT0691 0.61 -1.1 860,156 - BT0691 0.68 +1.1 860,199 - BT0691 0.73 -0.2 860,224 + BT0691 0.76 -0.9 860,250 - BT0691 0.79 -0.9 860,303 + BT0691 0.86 -0.2 860,367 + +0.1 860,368 - -0.9 860,374 + -2.2 860,374 + +2.1
Or see this region's nucleotide sequence