Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4590

Experiment: Varel_Bryant_medium_Glucose with Levofloxacin 0.0015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4588 and BT4589 are separated by 135 nucleotidesBT4589 and BT4590 are separated by 136 nucleotidesBT4590 and BT4591 are separated by 312 nucleotides BT4588: BT4588 - peptidyl-tRNA hydrolase (NCBI ptt file), at 6,010,959 to 6,011,528 BT4588 BT4589: BT4589 - putative 50S ribosomal protein L25 (NCBI ptt file), at 6,011,664 to 6,012,254 BT4589 BT4590: BT4590 - conserved hypothetical protein (NCBI ptt file), at 6,012,391 to 6,012,795 BT4590 BT4591: BT4591 - putative nitrogen utilization substance protein (NCBI ptt file), at 6,013,108 to 6,013,890 BT4591 Position (kb) 6012 6013Strain fitness (log2 ratio) -3 -2 -1 0 1at 6011.612 kb on - strandat 6011.622 kb on - strandat 6011.622 kb on - strandat 6011.622 kb on - strandat 6011.637 kb on - strandat 6012.283 kb on - strandat 6012.384 kb on + strandat 6012.384 kb on + strandat 6012.475 kb on - strand, within BT4590at 6012.486 kb on - strand, within BT4590at 6012.580 kb on - strand, within BT4590at 6012.580 kb on - strand, within BT4590at 6012.708 kb on - strand, within BT4590at 6012.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Levofloxacin 0.0015625 mM
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6,011,612 - -1.6
6,011,622 - -0.8
6,011,622 - -0.3
6,011,622 - -2.4
6,011,637 - +0.0
6,012,283 - +0.0
6,012,384 + -1.0
6,012,384 + -1.2
6,012,475 - BT4590 0.21 -1.0
6,012,486 - BT4590 0.23 -2.0
6,012,580 - BT4590 0.47 -3.0
6,012,580 - BT4590 0.47 -1.0
6,012,708 - BT4590 0.78 -1.6
6,012,950 + -0.4

Or see this region's nucleotide sequence