Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18600

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse2; day3
1,956,681	-		BBR_RS18595	0.13	-2.9
1,956,681	-		BBR_RS18595	0.13	-3.0
1,956,684	-		BBR_RS18595	0.14	-2.4
1,956,689	+		BBR_RS18595	0.14	-3.3
1,956,697	+		BBR_RS18595	0.15	-3.6
1,956,697	-		BBR_RS18595	0.15	-4.4
1,956,697	-		BBR_RS18595	0.15	-3.4
1,956,697	-		BBR_RS18595	0.15	-3.3
1,956,697	-		BBR_RS18595	0.15	-2.8
1,956,699	-		BBR_RS18595	0.15	-2.3
1,956,705	-		BBR_RS18595	0.16	-3.1
1,956,705	-		BBR_RS18595	0.16	-3.4
1,956,705	-		BBR_RS18595	0.16	-2.9
1,956,705	-		BBR_RS18595	0.16	-2.4
1,956,708	+		BBR_RS18595	0.16	-2.0
1,956,708	+		BBR_RS18595	0.16	-3.6
1,956,708	+		BBR_RS18595	0.16	-2.7
1,956,708	+		BBR_RS18595	0.16	-1.0
1,956,708	+		BBR_RS18595	0.16	-2.6
1,956,708	+		BBR_RS18595	0.16	-3.9
1,956,716	-		BBR_RS18595	0.17	-4.1
1,956,716	-		BBR_RS18595	0.17	-2.5
1,956,716	-		BBR_RS18595	0.17	-1.9
1,956,716	-		BBR_RS18595	0.17	-2.8
1,956,731	+		BBR_RS18595	0.19	-1.8
1,956,731	-		BBR_RS18595	0.19	-2.8
1,956,731	-		BBR_RS18595	0.19	-6.5
1,956,731	-		BBR_RS18595	0.19	-2.7
1,956,754	-		BBR_RS18595	0.21	-2.9
1,956,754	-		BBR_RS18595	0.21	-3.2
1,956,754	-		BBR_RS18595	0.21	-2.6
1,956,796	-		BBR_RS18595	0.25	-3.6
1,956,796	-		BBR_RS18595	0.25	-3.7
1,956,796	-		BBR_RS18595	0.25	-3.4
1,956,800	+		BBR_RS18595	0.26	-1.5
1,956,819	-		BBR_RS18595	0.28	-2.7
1,956,819	-		BBR_RS18595	0.28	-3.1
1,956,836	-		BBR_RS18595	0.29	-2.8
1,956,836	-		BBR_RS18595	0.29	-2.6
1,956,850	-		BBR_RS18595	0.31	-4.0
1,956,859	+		BBR_RS18595	0.32	-3.6
1,956,861	+		BBR_RS18595	0.32	-2.0
1,956,869	-		BBR_RS18595	0.33	+0.3
1,956,876	+		BBR_RS18595	0.34	-2.5
1,956,884	-		BBR_RS18595	0.34	-0.2
1,956,895	+		BBR_RS18595	0.36	-2.5
1,956,897	+		BBR_RS18595	0.36	-3.2
1,956,903	-		BBR_RS18595	0.36	-4.0
1,956,908	-		BBR_RS18595	0.37	-3.5
1,956,908	-		BBR_RS18595	0.37	-3.6
1,956,922	+		BBR_RS18595	0.38	-1.4
1,956,922	+		BBR_RS18595	0.38	-2.2
1,956,922	+		BBR_RS18595	0.38	-2.8
1,956,930	-		BBR_RS18595	0.39	-2.1
1,956,930	-		BBR_RS18595	0.39	-2.8
1,956,932	+		BBR_RS18595	0.39	-1.3
1,956,940	-		BBR_RS18595	0.40	-0.4
1,956,943	+		BBR_RS18595	0.40	-4.7
1,956,943	+		BBR_RS18595	0.40	-3.7
1,956,943	+		BBR_RS18595	0.40	-1.7
1,956,945	+		BBR_RS18595	0.41	-3.2
1,956,945	+		BBR_RS18595	0.41	-2.6
1,956,945	+		BBR_RS18595	0.41	-2.3
1,956,945	+		BBR_RS18595	0.41	-2.3
1,956,953	-		BBR_RS18595	0.42	-2.2
1,956,953	-		BBR_RS18595	0.42	-2.4
1,956,953	-		BBR_RS18595	0.42	-2.8
1,956,953	-		BBR_RS18595	0.42	-4.7
1,956,969	+		BBR_RS18595	0.43	-3.1
1,956,972	+		BBR_RS18595	0.43	-0.9
1,956,977	-		BBR_RS18595	0.44	-2.3
1,956,978	-		BBR_RS18595	0.44	-2.5
1,956,979	+		BBR_RS18595	0.44	-4.2
1,956,987	-		BBR_RS18595	0.45	-1.9
1,956,987	-		BBR_RS18595	0.45	-1.1
1,956,989	+		BBR_RS18595	0.45	-3.2
1,956,997	-		BBR_RS18595	0.46	-2.2
1,957,027	+		BBR_RS18595	0.49	+0.9
1,957,035	-		BBR_RS18595	0.50	-2.2
1,957,035	-		BBR_RS18595	0.50	-4.0
1,957,035	-		BBR_RS18595	0.50	-3.9
1,957,035	-		BBR_RS18595	0.50	-3.0
1,957,035	-		BBR_RS18595	0.50	-2.7
1,957,041	+		BBR_RS18595	0.51	-1.5
1,957,045	-		BBR_RS18595	0.51	-3.8
1,957,100	+		BBR_RS18595	0.57	-3.1
1,957,100	+		BBR_RS18595	0.57	-2.8
1,957,119	+		BBR_RS18595	0.59	-0.6
1,957,119	+		BBR_RS18595	0.59	-2.1
1,957,119	+		BBR_RS18595	0.59	-3.2
1,957,132	-		BBR_RS18595	0.60	-2.7
1,957,134	+		BBR_RS18595	0.60	-2.7
1,957,134	+		BBR_RS18595	0.60	-1.7
1,957,157	+		BBR_RS18595	0.63	-1.5
1,957,263	-		BBR_RS18595	0.74	-2.2
1,957,272	+		BBR_RS18595	0.75	-2.8
1,957,324	+		BBR_RS18595	0.80	-0.7
1,957,324	+		BBR_RS18595	0.80	-3.3
1,957,324	+		BBR_RS18595	0.80	+1.2
1,957,324	+		BBR_RS18595	0.80	-3.8
1,957,324	+		BBR_RS18595	0.80	-2.4
1,957,324	+		BBR_RS18595	0.80	-2.1
1,957,332	-		BBR_RS18595	0.81	-4.0
1,957,332	-		BBR_RS18595	0.81	-1.0
1,957,332	-		BBR_RS18595	0.81	-3.2
1,957,332	-		BBR_RS18595	0.81	-2.8
1,957,332	-		BBR_RS18595	0.81	-2.6
1,957,344	-		BBR_RS18595	0.82	-3.6
1,957,380	-		BBR_RS18595	0.86	-1.2
1,957,390	-		BBR_RS18595	0.87	-4.2
1,957,410	-		BBR_RS18595	0.89	-2.7
1,957,431	+				-2.8
1,957,446	+				-4.8
1,957,446	+				-3.2
1,957,446	+				-2.5
1,957,454	-				-3.4
1,957,460	+				-1.2
1,957,468	-				-2.9
1,957,477	+				-2.7
1,957,477	+				-2.3
1,957,492	+				-2.6
1,957,492	+				-2.9
1,957,492	+				-2.8
1,957,492	+				-3.3
1,957,492	+				-4.1
1,957,492	-				-3.2
1,957,500	-				-1.7
1,957,500	-				-4.1
1,957,500	-				-2.4
1,957,500	-				-1.5
1,957,500	-				+2.5
1,957,500	-				+0.2
1,957,500	-				-2.4
1,957,500	-				+1.3
1,957,500	-				-1.1
1,957,513	-				-3.1
1,957,515	-				-2.9
1,957,528	-				+1.6
1,957,545	+				-0.5
1,957,553	-				-2.2
1,957,571	+				-0.7
1,957,571	-				-0.2
1,957,577	-				+0.8
1,957,579	-				+0.5
1,957,580	+				-1.4
1,957,606	-				-0.9
1,957,606	-				+3.4
1,957,614	-				+1.5
1,957,614	-				+0.4
1,957,624	-				+0.8
1,957,627	+				+1.7
1,957,644	-				-0.9
1,957,651	+				-2.8
1,957,651	+				+1.5
1,957,652	-				-2.4
1,957,652	-				+1.6
1,957,657	-				-1.2
1,957,657	-				-1.9
1,957,657	-				-0.6
1,957,659	-				+1.1
1,957,659	-				+0.9
1,959,365	-				+0.9
1,959,367	-				-4.0
1,959,385	+				-1.4
1,959,386	-				+0.1
1,959,629	-				-2.1
1,959,658	+				+0.1
1,959,660	+				-0.6
1,959,660	+				+3.5
1,959,660	+				-1.9
1,959,668	-				-0.9
1,959,683	-				-0.2
1,959,753	-				+3.7
1,959,765	-		BBR_RS21060	0.12	+3.0
1,959,784	-		BBR_RS21060	0.19	+2.0
1,959,794	-		BBR_RS21060	0.23	-1.4
1,959,794	-		BBR_RS21060	0.23	-0.8
1,959,832	+		BBR_RS21060	0.38	-3.0
1,959,835	-		BBR_RS21060	0.39	-1.3
1,959,867	-		BBR_RS21060	0.52	+0.9
1,959,867	-		BBR_RS21060	0.52	+2.0
1,959,880	-		BBR_RS21060	0.57	+1.4
1,959,930	-		BBR_RS21060	0.76	+0.4
1,959,930	-		BBR_RS21060	0.76	-0.1
1,960,013	-				-0.1
1,960,022	+				+0.3
1,960,022	+				+0.6
1,960,034	+				-0.7
1,960,034	+				+2.0
1,960,034	+				-0.5
1,960,074	+				-1.0
1,960,082	-				+1.9
1,960,119	+				+0.8
1,960,183	+				+0.4
1,960,189	+				+1.6
1,960,189	+				-0.4
1,960,213	-				+1.6
1,960,218	-				+0.7
1,960,218	-				-2.8
1,960,235	+		BBR_RS18610	0.11	+2.3
1,960,328	+		BBR_RS18610	0.19	-1.1
1,960,341	+		BBR_RS18610	0.20	-0.0
1,960,346	+		BBR_RS18610	0.20	+1.9
1,960,348	+		BBR_RS18610	0.20	-1.7