Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_RNA75

Experiment: KB with Aristolochic Acid 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4642 and Psyr_RNA75 are separated by 15 nucleotidesPsyr_RNA75 and Psyr_4643 are separated by 126 nucleotides Psyr_4642: Psyr_4642 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,504,338 to 5,506,824 _4642 Psyr_RNA75: Psyr_RNA75 - tRNA-Met, at 5,506,840 to 5,506,916 _RNA75 Psyr_4643: Psyr_4643 - conjugal transfer protein, at 5,507,043 to 5,508,014 _4643 Position (kb) 5506 5507Strain fitness (log2 ratio) -2 -1 0 1 2at 5505.856 kb on + strand, within Psyr_4642at 5505.856 kb on + strand, within Psyr_4642at 5505.856 kb on + strand, within Psyr_4642at 5505.856 kb on + strand, within Psyr_4642at 5505.856 kb on + strand, within Psyr_4642at 5505.856 kb on + strand, within Psyr_4642at 5505.856 kb on + strand, within Psyr_4642at 5505.857 kb on - strand, within Psyr_4642at 5505.857 kb on - strand, within Psyr_4642at 5505.857 kb on - strand, within Psyr_4642at 5505.857 kb on - strand, within Psyr_4642at 5505.857 kb on - strand, within Psyr_4642at 5505.943 kb on + strand, within Psyr_4642at 5505.944 kb on - strand, within Psyr_4642at 5505.944 kb on - strand, within Psyr_4642at 5505.944 kb on - strand, within Psyr_4642at 5505.982 kb on + strand, within Psyr_4642at 5505.982 kb on + strand, within Psyr_4642at 5505.982 kb on + strand, within Psyr_4642at 5505.982 kb on + strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.983 kb on - strand, within Psyr_4642at 5505.984 kb on + strand, within Psyr_4642at 5505.984 kb on + strand, within Psyr_4642at 5505.985 kb on - strand, within Psyr_4642at 5505.985 kb on - strand, within Psyr_4642at 5506.075 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.254 kb on + strand, within Psyr_4642at 5506.255 kb on - strand, within Psyr_4642at 5506.256 kb on + strand, within Psyr_4642at 5506.256 kb on + strand, within Psyr_4642at 5506.256 kb on + strand, within Psyr_4642at 5506.256 kb on + strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.257 kb on - strand, within Psyr_4642at 5506.516 kb on + strand, within Psyr_4642at 5506.517 kb on - strand, within Psyr_4642at 5506.517 kb on - strand, within Psyr_4642at 5506.720 kb on + strandat 5506.720 kb on + strandat 5506.720 kb on + strandat 5506.721 kb on - strandat 5506.721 kb on - strandat 5506.820 kb on + strandat 5506.822 kb on + strandat 5506.973 kb on - strandat 5506.973 kb on - strandat 5506.989 kb on + strandat 5506.989 kb on + strandat 5506.989 kb on + strandat 5507.004 kb on + strandat 5507.004 kb on + strandat 5507.005 kb on - strandat 5507.005 kb on - strandat 5507.005 kb on - strandat 5507.033 kb on - strandat 5507.049 kb on - strandat 5507.084 kb on - strandat 5507.084 kb on - strandat 5507.086 kb on - strandat 5507.086 kb on - strandat 5507.104 kb on + strandat 5507.104 kb on + strandat 5507.104 kb on + strandat 5507.105 kb on - strandat 5507.110 kb on + strandat 5507.111 kb on - strandat 5507.111 kb on - strandat 5507.245 kb on + strand, within Psyr_4643at 5507.245 kb on + strand, within Psyr_4643at 5507.246 kb on - strand, within Psyr_4643at 5507.246 kb on - strand, within Psyr_4643at 5507.246 kb on - strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.256 kb on + strand, within Psyr_4643at 5507.257 kb on - strand, within Psyr_4643at 5507.257 kb on - strand, within Psyr_4643at 5507.257 kb on - strand, within Psyr_4643at 5507.259 kb on + strand, within Psyr_4643at 5507.260 kb on - strand, within Psyr_4643at 5507.260 kb on - strand, within Psyr_4643at 5507.260 kb on - strand, within Psyr_4643at 5507.260 kb on - strand, within Psyr_4643at 5507.269 kb on + strand, within Psyr_4643at 5507.270 kb on - strand, within Psyr_4643at 5507.270 kb on - strand, within Psyr_4643at 5507.270 kb on - strand, within Psyr_4643at 5507.317 kb on + strand, within Psyr_4643at 5507.343 kb on + strand, within Psyr_4643at 5507.343 kb on + strand, within Psyr_4643at 5507.344 kb on - strand, within Psyr_4643at 5507.344 kb on - strand, within Psyr_4643at 5507.344 kb on - strand, within Psyr_4643at 5507.344 kb on - strand, within Psyr_4643at 5507.378 kb on + strand, within Psyr_4643at 5507.379 kb on - strand, within Psyr_4643at 5507.383 kb on + strand, within Psyr_4643at 5507.383 kb on + strand, within Psyr_4643at 5507.383 kb on + strand, within Psyr_4643at 5507.383 kb on + strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.384 kb on - strand, within Psyr_4643at 5507.389 kb on + strand, within Psyr_4643at 5507.389 kb on + strand, within Psyr_4643at 5507.390 kb on - strand, within Psyr_4643at 5507.390 kb on - strand, within Psyr_4643at 5507.410 kb on + strand, within Psyr_4643at 5507.411 kb on - strand, within Psyr_4643at 5507.434 kb on + strand, within Psyr_4643at 5507.489 kb on + strand, within Psyr_4643at 5507.490 kb on - strand, within Psyr_4643at 5507.537 kb on + strand, within Psyr_4643at 5507.538 kb on - strand, within Psyr_4643at 5507.538 kb on - strand, within Psyr_4643at 5507.543 kb on - strand, within Psyr_4643at 5507.543 kb on - strand, within Psyr_4643at 5507.543 kb on - strand, within Psyr_4643at 5507.584 kb on + strand, within Psyr_4643at 5507.584 kb on + strand, within Psyr_4643at 5507.584 kb on + strand, within Psyr_4643at 5507.585 kb on - strand, within Psyr_4643at 5507.619 kb on - strand, within Psyr_4643at 5507.663 kb on + strand, within Psyr_4643at 5507.663 kb on + strand, within Psyr_4643at 5507.663 kb on + strand, within Psyr_4643at 5507.664 kb on - strand, within Psyr_4643at 5507.673 kb on + strand, within Psyr_4643at 5507.760 kb on + strand, within Psyr_4643at 5507.760 kb on + strand, within Psyr_4643at 5507.839 kb on + strand, within Psyr_4643at 5507.839 kb on + strand, within Psyr_4643at 5507.839 kb on + strand, within Psyr_4643at 5507.840 kb on - strand, within Psyr_4643at 5507.840 kb on - strand, within Psyr_4643at 5507.840 kb on - strand, within Psyr_4643at 5507.909 kb on + strand, within Psyr_4643

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
remove
5,505,856 + Psyr_4642 0.61 +0.8
5,505,856 + Psyr_4642 0.61 +1.5
5,505,856 + Psyr_4642 0.61 -1.2
5,505,856 + Psyr_4642 0.61 -0.2
5,505,856 + Psyr_4642 0.61 -0.3
5,505,856 + Psyr_4642 0.61 -0.9
5,505,856 + Psyr_4642 0.61 -1.2
5,505,857 - Psyr_4642 0.61 -0.4
5,505,857 - Psyr_4642 0.61 +0.7
5,505,857 - Psyr_4642 0.61 -0.1
5,505,857 - Psyr_4642 0.61 +1.2
5,505,857 - Psyr_4642 0.61 -0.2
5,505,943 + Psyr_4642 0.65 -0.1
5,505,944 - Psyr_4642 0.65 +1.1
5,505,944 - Psyr_4642 0.65 +0.4
5,505,944 - Psyr_4642 0.65 +0.8
5,505,982 + Psyr_4642 0.66 -0.1
5,505,982 + Psyr_4642 0.66 +1.3
5,505,982 + Psyr_4642 0.66 +1.0
5,505,982 + Psyr_4642 0.66 -0.2
5,505,983 - Psyr_4642 0.66 +0.5
5,505,983 - Psyr_4642 0.66 -0.3
5,505,983 - Psyr_4642 0.66 -0.0
5,505,983 - Psyr_4642 0.66 +0.6
5,505,983 - Psyr_4642 0.66 +0.9
5,505,983 - Psyr_4642 0.66 -0.8
5,505,983 - Psyr_4642 0.66 -0.1
5,505,984 + Psyr_4642 0.66 +0.5
5,505,984 + Psyr_4642 0.66 -0.8
5,505,985 - Psyr_4642 0.66 -0.0
5,505,985 - Psyr_4642 0.66 +0.7
5,506,075 + Psyr_4642 0.70 -0.6
5,506,254 + Psyr_4642 0.77 +1.5
5,506,254 + Psyr_4642 0.77 -1.5
5,506,254 + Psyr_4642 0.77 -1.0
5,506,254 + Psyr_4642 0.77 -1.0
5,506,254 + Psyr_4642 0.77 -0.5
5,506,254 + Psyr_4642 0.77 +0.3
5,506,254 + Psyr_4642 0.77 -1.6
5,506,254 + Psyr_4642 0.77 +0.8
5,506,255 - Psyr_4642 0.77 -1.1
5,506,256 + Psyr_4642 0.77 +0.3
5,506,256 + Psyr_4642 0.77 -0.5
5,506,256 + Psyr_4642 0.77 +0.1
5,506,256 + Psyr_4642 0.77 -0.6
5,506,257 - Psyr_4642 0.77 +0.8
5,506,257 - Psyr_4642 0.77 +0.6
5,506,257 - Psyr_4642 0.77 -0.4
5,506,257 - Psyr_4642 0.77 -0.1
5,506,257 - Psyr_4642 0.77 -0.2
5,506,257 - Psyr_4642 0.77 -0.4
5,506,257 - Psyr_4642 0.77 -0.9
5,506,516 + Psyr_4642 0.88 -1.1
5,506,517 - Psyr_4642 0.88 +0.7
5,506,517 - Psyr_4642 0.88 +1.7
5,506,720 + -1.1
5,506,720 + -0.1
5,506,720 + -1.6
5,506,721 - +0.1
5,506,721 - -1.6
5,506,820 + -0.1
5,506,822 + +0.4
5,506,973 - +0.0
5,506,973 - -0.4
5,506,989 + +0.1
5,506,989 + -0.5
5,506,989 + +0.5
5,507,004 + -0.1
5,507,004 + -0.5
5,507,005 - -0.1
5,507,005 - -0.2
5,507,005 - -0.4
5,507,033 - +1.0
5,507,049 - -0.3
5,507,084 - -0.1
5,507,084 - -0.4
5,507,086 - +0.4
5,507,086 - +0.5
5,507,104 + -1.8
5,507,104 + -0.2
5,507,104 + +0.3
5,507,105 - +0.4
5,507,110 + -0.4
5,507,111 - +0.4
5,507,111 - +0.2
5,507,245 + Psyr_4643 0.21 -0.0
5,507,245 + Psyr_4643 0.21 +0.2
5,507,246 - Psyr_4643 0.21 -0.3
5,507,246 - Psyr_4643 0.21 -1.6
5,507,246 - Psyr_4643 0.21 +0.4
5,507,256 + Psyr_4643 0.22 +0.1
5,507,256 + Psyr_4643 0.22 -0.6
5,507,256 + Psyr_4643 0.22 -0.4
5,507,256 + Psyr_4643 0.22 +1.8
5,507,256 + Psyr_4643 0.22 +0.1
5,507,256 + Psyr_4643 0.22 -0.7
5,507,256 + Psyr_4643 0.22 +0.3
5,507,256 + Psyr_4643 0.22 +1.0
5,507,256 + Psyr_4643 0.22 +0.2
5,507,256 + Psyr_4643 0.22 -0.2
5,507,257 - Psyr_4643 0.22 -0.0
5,507,257 - Psyr_4643 0.22 -0.1
5,507,257 - Psyr_4643 0.22 +0.2
5,507,259 + Psyr_4643 0.22 -0.0
5,507,260 - Psyr_4643 0.22 +0.4
5,507,260 - Psyr_4643 0.22 +0.5
5,507,260 - Psyr_4643 0.22 -0.5
5,507,260 - Psyr_4643 0.22 +0.4
5,507,269 + Psyr_4643 0.23 +0.6
5,507,270 - Psyr_4643 0.23 -0.0
5,507,270 - Psyr_4643 0.23 +0.5
5,507,270 - Psyr_4643 0.23 +0.5
5,507,317 + Psyr_4643 0.28 -0.5
5,507,343 + Psyr_4643 0.31 +0.4
5,507,343 + Psyr_4643 0.31 +0.7
5,507,344 - Psyr_4643 0.31 -0.8
5,507,344 - Psyr_4643 0.31 -1.3
5,507,344 - Psyr_4643 0.31 +0.1
5,507,344 - Psyr_4643 0.31 +0.3
5,507,378 + Psyr_4643 0.34 +0.2
5,507,379 - Psyr_4643 0.35 +2.1
5,507,383 + Psyr_4643 0.35 +0.3
5,507,383 + Psyr_4643 0.35 +0.5
5,507,383 + Psyr_4643 0.35 -0.1
5,507,383 + Psyr_4643 0.35 -1.4
5,507,384 - Psyr_4643 0.35 -0.0
5,507,384 - Psyr_4643 0.35 +0.8
5,507,384 - Psyr_4643 0.35 +0.4
5,507,384 - Psyr_4643 0.35 +0.2
5,507,384 - Psyr_4643 0.35 -0.9
5,507,384 - Psyr_4643 0.35 -0.2
5,507,384 - Psyr_4643 0.35 +0.1
5,507,384 - Psyr_4643 0.35 +0.2
5,507,384 - Psyr_4643 0.35 -0.1
5,507,389 + Psyr_4643 0.36 -1.0
5,507,389 + Psyr_4643 0.36 +0.5
5,507,390 - Psyr_4643 0.36 -0.0
5,507,390 - Psyr_4643 0.36 +0.3
5,507,410 + Psyr_4643 0.38 -0.5
5,507,411 - Psyr_4643 0.38 +0.1
5,507,434 + Psyr_4643 0.40 -0.2
5,507,489 + Psyr_4643 0.46 +0.2
5,507,490 - Psyr_4643 0.46 +1.1
5,507,537 + Psyr_4643 0.51 -0.9
5,507,538 - Psyr_4643 0.51 -1.3
5,507,538 - Psyr_4643 0.51 +1.0
5,507,543 - Psyr_4643 0.51 +0.2
5,507,543 - Psyr_4643 0.51 -0.1
5,507,543 - Psyr_4643 0.51 +0.4
5,507,584 + Psyr_4643 0.56 -1.4
5,507,584 + Psyr_4643 0.56 +0.8
5,507,584 + Psyr_4643 0.56 +0.5
5,507,585 - Psyr_4643 0.56 -0.4
5,507,619 - Psyr_4643 0.59 -0.3
5,507,663 + Psyr_4643 0.64 -0.2
5,507,663 + Psyr_4643 0.64 +0.2
5,507,663 + Psyr_4643 0.64 +0.1
5,507,664 - Psyr_4643 0.64 -0.8
5,507,673 + Psyr_4643 0.65 +0.1
5,507,760 + Psyr_4643 0.74 +0.5
5,507,760 + Psyr_4643 0.74 +0.2
5,507,839 + Psyr_4643 0.82 -0.7
5,507,839 + Psyr_4643 0.82 -0.9
5,507,839 + Psyr_4643 0.82 -1.5
5,507,840 - Psyr_4643 0.82 -0.9
5,507,840 - Psyr_4643 0.82 +0.1
5,507,840 - Psyr_4643 0.82 -0.2
5,507,909 + Psyr_4643 0.89 -1.3

Or see this region's nucleotide sequence