Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5025

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5024 and Psyr_5025 are separated by 0 nucleotidesPsyr_5025 and Psyr_5026 are separated by 165 nucleotidesPsyr_5026 and Psyr_5027 are separated by 247 nucleotides Psyr_5024: Psyr_5024 - conserved hypothetical protein, at 5,964,171 to 5,966,132 _5024 Psyr_5025: Psyr_5025 - conserved hypothetical protein, at 5,966,133 to 5,966,510 _5025 Psyr_5026: Psyr_5026 - conserved hypothetical protein, at 5,966,676 to 5,967,119 _5026 Psyr_5027: Psyr_5027 - bacterial nucleoid protein HU alpha subunit, at 5,967,367 to 5,967,642 _5027 Position (kb) 5966 5967Strain fitness (log2 ratio) -2 -1 0 1 2at 5965.266 kb on + strand, within Psyr_5024at 5965.266 kb on + strand, within Psyr_5024at 5965.266 kb on + strand, within Psyr_5024at 5965.266 kb on + strand, within Psyr_5024at 5965.266 kb on + strand, within Psyr_5024at 5965.266 kb on + strand, within Psyr_5024at 5965.267 kb on - strand, within Psyr_5024at 5965.267 kb on - strand, within Psyr_5024at 5965.267 kb on - strand, within Psyr_5024at 5965.267 kb on - strand, within Psyr_5024at 5965.267 kb on - strand, within Psyr_5024at 5965.267 kb on - strand, within Psyr_5024at 5965.327 kb on + strand, within Psyr_5024at 5965.327 kb on + strand, within Psyr_5024at 5965.328 kb on - strand, within Psyr_5024at 5965.369 kb on - strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.380 kb on + strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.381 kb on - strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.383 kb on + strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.384 kb on - strand, within Psyr_5024at 5965.528 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.705 kb on + strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.706 kb on - strand, within Psyr_5024at 5965.709 kb on + strand, within Psyr_5024at 5965.709 kb on + strand, within Psyr_5024at 5965.710 kb on - strand, within Psyr_5024at 5965.791 kb on + strand, within Psyr_5024at 5965.791 kb on + strand, within Psyr_5024at 5965.792 kb on - strand, within Psyr_5024at 5965.792 kb on - strand, within Psyr_5024at 5966.161 kb on + strandat 5966.162 kb on - strandat 5966.511 kb on - strandat 5966.511 kb on - strandat 5966.560 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.718 kb on + strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.719 kb on - strandat 5966.743 kb on + strand, within Psyr_5026at 5966.743 kb on + strand, within Psyr_5026at 5966.743 kb on + strand, within Psyr_5026at 5966.743 kb on + strand, within Psyr_5026at 5966.744 kb on - strand, within Psyr_5026at 5966.744 kb on - strand, within Psyr_5026at 5966.744 kb on - strand, within Psyr_5026at 5966.744 kb on - strand, within Psyr_5026at 5966.744 kb on - strand, within Psyr_5026at 5966.890 kb on + strand, within Psyr_5026at 5966.890 kb on + strand, within Psyr_5026at 5966.890 kb on + strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5966.891 kb on - strand, within Psyr_5026at 5967.052 kb on + strand, within Psyr_5026at 5967.052 kb on + strand, within Psyr_5026at 5967.052 kb on + strand, within Psyr_5026at 5967.052 kb on + strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.053 kb on - strand, within Psyr_5026at 5967.137 kb on + strandat 5967.137 kb on + strandat 5967.138 kb on - strandat 5967.138 kb on - strandat 5967.138 kb on - strandat 5967.138 kb on - strandat 5967.169 kb on - strandat 5967.169 kb on - strandat 5967.223 kb on + strandat 5967.223 kb on + strandat 5967.223 kb on + strandat 5967.223 kb on + strandat 5967.223 kb on + strandat 5967.223 kb on + strandat 5967.224 kb on - strandat 5967.224 kb on - strandat 5967.224 kb on - strandat 5967.224 kb on - strandat 5967.279 kb on + strandat 5967.279 kb on + strandat 5967.279 kb on + strandat 5967.280 kb on - strandat 5967.280 kb on - strandat 5967.508 kb on + strand, within Psyr_5027

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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5,965,266 + Psyr_5024 0.56 -1.3
5,965,266 + Psyr_5024 0.56 +0.2
5,965,266 + Psyr_5024 0.56 -0.2
5,965,266 + Psyr_5024 0.56 +0.3
5,965,266 + Psyr_5024 0.56 +0.0
5,965,266 + Psyr_5024 0.56 +0.2
5,965,267 - Psyr_5024 0.56 +1.0
5,965,267 - Psyr_5024 0.56 -0.2
5,965,267 - Psyr_5024 0.56 -0.1
5,965,267 - Psyr_5024 0.56 +0.1
5,965,267 - Psyr_5024 0.56 +0.9
5,965,267 - Psyr_5024 0.56 +0.4
5,965,327 + Psyr_5024 0.59 -0.3
5,965,327 + Psyr_5024 0.59 -0.2
5,965,328 - Psyr_5024 0.59 -0.0
5,965,369 - Psyr_5024 0.61 +0.1
5,965,380 + Psyr_5024 0.62 +0.4
5,965,380 + Psyr_5024 0.62 -2.2
5,965,380 + Psyr_5024 0.62 -0.2
5,965,380 + Psyr_5024 0.62 +0.6
5,965,380 + Psyr_5024 0.62 +0.7
5,965,380 + Psyr_5024 0.62 +0.1
5,965,380 + Psyr_5024 0.62 -0.9
5,965,380 + Psyr_5024 0.62 -0.8
5,965,380 + Psyr_5024 0.62 -0.7
5,965,380 + Psyr_5024 0.62 -0.4
5,965,380 + Psyr_5024 0.62 +1.3
5,965,380 + Psyr_5024 0.62 +0.8
5,965,380 + Psyr_5024 0.62 -1.2
5,965,381 - Psyr_5024 0.62 -0.2
5,965,381 - Psyr_5024 0.62 +0.7
5,965,381 - Psyr_5024 0.62 +0.9
5,965,381 - Psyr_5024 0.62 +0.2
5,965,381 - Psyr_5024 0.62 +0.3
5,965,381 - Psyr_5024 0.62 +0.3
5,965,381 - Psyr_5024 0.62 +0.9
5,965,381 - Psyr_5024 0.62 -0.4
5,965,381 - Psyr_5024 0.62 -0.7
5,965,381 - Psyr_5024 0.62 +0.1
5,965,381 - Psyr_5024 0.62 -0.5
5,965,383 + Psyr_5024 0.62 -0.6
5,965,383 + Psyr_5024 0.62 +0.3
5,965,383 + Psyr_5024 0.62 +1.0
5,965,383 + Psyr_5024 0.62 -0.3
5,965,383 + Psyr_5024 0.62 +1.4
5,965,383 + Psyr_5024 0.62 +0.7
5,965,383 + Psyr_5024 0.62 -2.0
5,965,384 - Psyr_5024 0.62 +0.9
5,965,384 - Psyr_5024 0.62 -0.4
5,965,384 - Psyr_5024 0.62 -0.0
5,965,384 - Psyr_5024 0.62 +0.0
5,965,384 - Psyr_5024 0.62 +0.0
5,965,384 - Psyr_5024 0.62 -0.1
5,965,384 - Psyr_5024 0.62 +1.3
5,965,384 - Psyr_5024 0.62 +0.4
5,965,528 + Psyr_5024 0.69 -0.3
5,965,705 + Psyr_5024 0.78 -0.3
5,965,705 + Psyr_5024 0.78 +0.3
5,965,705 + Psyr_5024 0.78 -0.0
5,965,705 + Psyr_5024 0.78 -0.9
5,965,705 + Psyr_5024 0.78 -0.7
5,965,705 + Psyr_5024 0.78 +1.1
5,965,705 + Psyr_5024 0.78 +0.2
5,965,705 + Psyr_5024 0.78 +1.3
5,965,706 - Psyr_5024 0.78 +0.9
5,965,706 - Psyr_5024 0.78 -0.0
5,965,706 - Psyr_5024 0.78 +0.0
5,965,706 - Psyr_5024 0.78 -1.7
5,965,706 - Psyr_5024 0.78 +0.4
5,965,706 - Psyr_5024 0.78 -0.3
5,965,706 - Psyr_5024 0.78 -0.0
5,965,706 - Psyr_5024 0.78 +0.1
5,965,709 + Psyr_5024 0.78 +0.0
5,965,709 + Psyr_5024 0.78 -0.2
5,965,710 - Psyr_5024 0.78 -1.6
5,965,791 + Psyr_5024 0.83 +0.9
5,965,791 + Psyr_5024 0.83 +0.8
5,965,792 - Psyr_5024 0.83 -1.0
5,965,792 - Psyr_5024 0.83 +1.4
5,966,161 + -0.1
5,966,162 - -0.9
5,966,511 - +0.8
5,966,511 - -0.1
5,966,560 + -0.6
5,966,718 + -0.0
5,966,718 + -1.0
5,966,718 + +0.7
5,966,718 + -0.1
5,966,718 + +0.1
5,966,718 + -0.3
5,966,718 + -0.4
5,966,718 + -0.1
5,966,719 - +0.0
5,966,719 - +1.2
5,966,719 - +0.4
5,966,719 - -0.3
5,966,719 - +0.3
5,966,719 - +0.0
5,966,719 - -0.7
5,966,719 - +0.6
5,966,743 + Psyr_5026 0.15 +0.4
5,966,743 + Psyr_5026 0.15 -0.1
5,966,743 + Psyr_5026 0.15 +0.0
5,966,743 + Psyr_5026 0.15 +0.9
5,966,744 - Psyr_5026 0.15 +1.1
5,966,744 - Psyr_5026 0.15 -0.2
5,966,744 - Psyr_5026 0.15 +0.2
5,966,744 - Psyr_5026 0.15 -0.4
5,966,744 - Psyr_5026 0.15 +0.4
5,966,890 + Psyr_5026 0.48 +1.4
5,966,890 + Psyr_5026 0.48 -0.6
5,966,890 + Psyr_5026 0.48 -0.8
5,966,891 - Psyr_5026 0.48 -0.6
5,966,891 - Psyr_5026 0.48 -0.9
5,966,891 - Psyr_5026 0.48 +1.8
5,966,891 - Psyr_5026 0.48 +0.4
5,966,891 - Psyr_5026 0.48 +0.5
5,966,891 - Psyr_5026 0.48 -0.3
5,966,891 - Psyr_5026 0.48 -0.2
5,967,052 + Psyr_5026 0.85 +0.2
5,967,052 + Psyr_5026 0.85 +1.3
5,967,052 + Psyr_5026 0.85 -0.0
5,967,052 + Psyr_5026 0.85 -0.2
5,967,053 - Psyr_5026 0.85 -1.7
5,967,053 - Psyr_5026 0.85 +0.9
5,967,053 - Psyr_5026 0.85 -0.3
5,967,053 - Psyr_5026 0.85 -0.5
5,967,053 - Psyr_5026 0.85 +0.3
5,967,053 - Psyr_5026 0.85 +2.0
5,967,053 - Psyr_5026 0.85 -0.6
5,967,137 + +0.1
5,967,137 + +0.7
5,967,138 - -0.1
5,967,138 - +1.3
5,967,138 - -0.4
5,967,138 - +0.1
5,967,169 - -0.2
5,967,169 - +0.3
5,967,223 + -1.0
5,967,223 + +0.4
5,967,223 + -1.3
5,967,223 + -0.0
5,967,223 + -0.4
5,967,223 + +1.0
5,967,224 - -0.5
5,967,224 - +0.4
5,967,224 - +0.0
5,967,224 - +0.3
5,967,279 + -1.6
5,967,279 + -0.2
5,967,279 + +0.5
5,967,280 - +0.0
5,967,280 - +0.3
5,967,508 + Psyr_5027 0.51 -0.2

Or see this region's nucleotide sequence