Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4977 and Psyr_4978 are separated by 153 nucleotides Psyr_4978 and Psyr_4979 are separated by 168 nucleotides Psyr_4979 and Psyr_4980 are separated by 130 nucleotides
Psyr_4977: Psyr_4977 - ADP-ribosylglycohydrolase, at 5,903,248 to 5,904,258
_4977
Psyr_4978: Psyr_4978 - hypothetical protein, at 5,904,412 to 5,904,711
_4978
Psyr_4979: Psyr_4979 - hypothetical protein, at 5,904,880 to 5,905,437
_4979
Psyr_4980: Psyr_4980 - conserved hypothetical protein, at 5,905,568 to 5,905,888
_4980
Position (kb) 5904
5905 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5903.456 kb on - strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.461 kb on - strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.526 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.674 kb on + strand, within Psyr_4977 at 5903.675 kb on - strand, within Psyr_4977 at 5903.689 kb on + strand, within Psyr_4977 at 5903.689 kb on + strand, within Psyr_4977 at 5903.690 kb on - strand, within Psyr_4977 at 5903.690 kb on - strand, within Psyr_4977 at 5903.706 kb on + strand, within Psyr_4977 at 5903.706 kb on + strand, within Psyr_4977 at 5903.707 kb on - strand, within Psyr_4977 at 5903.770 kb on + strand, within Psyr_4977 at 5903.770 kb on + strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.814 kb on + strand, within Psyr_4977 at 5903.814 kb on + strand, within Psyr_4977 at 5903.931 kb on + strand, within Psyr_4977 at 5903.931 kb on + strand, within Psyr_4977 at 5903.945 kb on - strand, within Psyr_4977 at 5903.945 kb on - strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.052 kb on - strand, within Psyr_4977 at 5904.052 kb on - strand, within Psyr_4977 at 5904.118 kb on - strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.192 kb on + strand at 5904.226 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.267 kb on + strand at 5904.267 kb on + strand at 5904.268 kb on - strand at 5904.268 kb on - strand at 5904.268 kb on - strand at 5904.311 kb on + strand at 5904.378 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.394 kb on - strand at 5904.394 kb on - strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.431 kb on - strand at 5904.453 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.588 kb on - strand, within Psyr_4978 at 5904.590 kb on + strand, within Psyr_4978 at 5904.591 kb on - strand, within Psyr_4978 at 5904.723 kb on - strand at 5904.813 kb on - strand at 5904.828 kb on + strand at 5904.875 kb on - strand at 5904.892 kb on + strand at 5904.900 kb on + strand at 5904.900 kb on + strand at 5904.906 kb on - strand at 5904.945 kb on + strand, within Psyr_4979 at 5904.995 kb on - strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.038 kb on + strand, within Psyr_4979 at 5905.103 kb on - strand, within Psyr_4979 at 5905.207 kb on + strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.239 kb on + strand, within Psyr_4979 at 5905.240 kb on - strand, within Psyr_4979 at 5905.267 kb on + strand, within Psyr_4979 at 5905.290 kb on + strand, within Psyr_4979 at 5905.291 kb on - strand, within Psyr_4979 at 5905.299 kb on - strand, within Psyr_4979 at 5905.306 kb on + strand, within Psyr_4979 at 5905.307 kb on - strand, within Psyr_4979 at 5905.309 kb on + strand, within Psyr_4979 at 5905.413 kb on + strand at 5905.437 kb on + strand at 5905.442 kb on - strand at 5905.473 kb on - strand at 5905.550 kb on + strand at 5905.624 kb on + strand, within Psyr_4980 at 5905.648 kb on - strand, within Psyr_4980 at 5905.648 kb on - strand, within Psyr_4980 at 5905.659 kb on - strand, within Psyr_4980 at 5905.668 kb on + strand, within Psyr_4980 at 5905.669 kb on - strand, within Psyr_4980 at 5905.669 kb on - strand, within Psyr_4980
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,903,456 - Psyr_4977 0.21 -0.1 5,903,460 + Psyr_4977 0.21 -0.2 5,903,460 + Psyr_4977 0.21 +0.0 5,903,460 + Psyr_4977 0.21 -1.4 5,903,460 + Psyr_4977 0.21 +1.0 5,903,460 + Psyr_4977 0.21 -0.1 5,903,461 - Psyr_4977 0.21 -0.7 5,903,525 + Psyr_4977 0.27 -1.9 5,903,525 + Psyr_4977 0.27 +0.4 5,903,525 + Psyr_4977 0.27 -2.6 5,903,526 - Psyr_4977 0.27 +1.6 5,903,654 - Psyr_4977 0.40 -0.3 5,903,654 - Psyr_4977 0.40 +0.4 5,903,654 - Psyr_4977 0.40 +0.8 5,903,654 - Psyr_4977 0.40 -0.2 5,903,674 + Psyr_4977 0.42 -1.0 5,903,675 - Psyr_4977 0.42 +0.1 5,903,689 + Psyr_4977 0.44 +1.0 5,903,689 + Psyr_4977 0.44 +0.6 5,903,690 - Psyr_4977 0.44 -0.3 5,903,690 - Psyr_4977 0.44 -1.1 5,903,706 + Psyr_4977 0.45 +0.3 5,903,706 + Psyr_4977 0.45 -1.4 5,903,707 - Psyr_4977 0.45 +0.3 5,903,770 + Psyr_4977 0.52 +0.6 5,903,770 + Psyr_4977 0.52 -0.8 5,903,792 - Psyr_4977 0.54 +1.0 5,903,792 - Psyr_4977 0.54 -2.1 5,903,792 - Psyr_4977 0.54 +0.2 5,903,792 - Psyr_4977 0.54 -0.5 5,903,792 - Psyr_4977 0.54 -0.2 5,903,814 + Psyr_4977 0.56 -0.4 5,903,814 + Psyr_4977 0.56 +0.1 5,903,931 + Psyr_4977 0.68 +0.3 5,903,931 + Psyr_4977 0.68 -1.6 5,903,945 - Psyr_4977 0.69 +0.0 5,903,945 - Psyr_4977 0.69 +0.6 5,903,990 + Psyr_4977 0.73 -0.2 5,903,990 + Psyr_4977 0.73 -0.3 5,903,990 + Psyr_4977 0.73 -0.2 5,903,990 + Psyr_4977 0.73 -0.8 5,903,990 + Psyr_4977 0.73 +0.4 5,903,990 + Psyr_4977 0.73 +1.0 5,903,990 + Psyr_4977 0.73 -2.0 5,903,991 - Psyr_4977 0.73 -0.4 5,903,991 - Psyr_4977 0.73 +2.0 5,903,991 - Psyr_4977 0.73 -0.3 5,903,991 - Psyr_4977 0.73 +0.7 5,903,991 - Psyr_4977 0.73 -0.3 5,903,991 - Psyr_4977 0.73 +0.3 5,903,991 - Psyr_4977 0.73 +2.2 5,903,991 - Psyr_4977 0.73 -0.4 5,904,051 + Psyr_4977 0.79 -2.4 5,904,051 + Psyr_4977 0.79 -0.1 5,904,051 + Psyr_4977 0.79 +1.0 5,904,052 - Psyr_4977 0.80 -1.6 5,904,052 - Psyr_4977 0.80 -1.3 5,904,118 - Psyr_4977 0.86 -0.8 5,904,133 + Psyr_4977 0.88 -0.4 5,904,133 + Psyr_4977 0.88 -0.2 5,904,133 + Psyr_4977 0.88 +0.5 5,904,133 + Psyr_4977 0.88 -0.4 5,904,133 + Psyr_4977 0.88 -0.4 5,904,133 + Psyr_4977 0.88 +0.4 5,904,133 + Psyr_4977 0.88 -1.0 5,904,134 - Psyr_4977 0.88 -0.2 5,904,134 - Psyr_4977 0.88 -0.2 5,904,134 - Psyr_4977 0.88 -0.9 5,904,134 - Psyr_4977 0.88 +0.2 5,904,134 - Psyr_4977 0.88 +1.0 5,904,192 + +0.5 5,904,226 + -0.9 5,904,258 + -0.2 5,904,258 + +0.6 5,904,258 + +0.7 5,904,258 + +0.3 5,904,258 + -1.5 5,904,258 + +1.0 5,904,258 + +0.3 5,904,258 + +0.2 5,904,258 + +0.2 5,904,258 + -0.9 5,904,258 + +0.1 5,904,258 + -0.4 5,904,258 + -1.2 5,904,258 + -1.9 5,904,258 + -1.4 5,904,258 + -1.1 5,904,258 + +0.6 5,904,258 + -0.3 5,904,258 + -2.2 5,904,259 - -0.6 5,904,259 - +0.8 5,904,259 - -1.0 5,904,259 - -0.8 5,904,259 - -0.1 5,904,259 - -0.3 5,904,259 - -0.7 5,904,259 - +0.4 5,904,259 - -0.1 5,904,259 - -0.4 5,904,259 - +0.2 5,904,259 - +0.7 5,904,259 - -0.4 5,904,260 + +1.2 5,904,260 + +0.6 5,904,260 + -1.3 5,904,260 + +0.2 5,904,260 + -0.6 5,904,260 + -1.5 5,904,260 + -0.4 5,904,261 - -0.8 5,904,261 - +0.0 5,904,261 - -0.7 5,904,261 - +0.6 5,904,261 - +1.5 5,904,261 - -0.2 5,904,261 - -0.3 5,904,261 - +1.0 5,904,261 - +0.1 5,904,261 - +0.0 5,904,267 + -2.1 5,904,267 + -0.6 5,904,268 - -0.3 5,904,268 - -0.5 5,904,268 - -0.5 5,904,311 + -1.1 5,904,378 + -0.2 5,904,393 + -0.9 5,904,393 + +1.6 5,904,393 + -1.6 5,904,393 + -0.1 5,904,393 + -1.1 5,904,394 - +0.1 5,904,394 - -1.4 5,904,430 + -1.2 5,904,430 + -0.7 5,904,430 + -0.6 5,904,430 + -0.1 5,904,430 + -1.7 5,904,430 + +0.6 5,904,430 + -0.2 5,904,431 - +0.2 5,904,453 + Psyr_4978 0.14 -1.8 5,904,587 + Psyr_4978 0.58 -0.7 5,904,587 + Psyr_4978 0.58 +0.6 5,904,587 + Psyr_4978 0.58 -1.7 5,904,587 + Psyr_4978 0.58 +1.6 5,904,587 + Psyr_4978 0.58 +0.0 5,904,588 - Psyr_4978 0.59 -0.3 5,904,590 + Psyr_4978 0.59 -2.2 5,904,591 - Psyr_4978 0.60 -1.2 5,904,723 - -1.1 5,904,813 - -0.1 5,904,828 + +2.6 5,904,875 - +3.2 5,904,892 + -1.2 5,904,900 + +0.9 5,904,900 + -1.7 5,904,906 - -0.2 5,904,945 + Psyr_4979 0.12 +0.0 5,904,995 - Psyr_4979 0.21 -0.3 5,905,017 + Psyr_4979 0.25 -0.4 5,905,017 + Psyr_4979 0.25 +0.2 5,905,017 + Psyr_4979 0.25 -0.1 5,905,038 + Psyr_4979 0.28 -0.5 5,905,103 - Psyr_4979 0.40 +0.1 5,905,207 + Psyr_4979 0.59 +0.2 5,905,208 - Psyr_4979 0.59 +0.6 5,905,208 - Psyr_4979 0.59 -0.3 5,905,208 - Psyr_4979 0.59 +3.2 5,905,239 + Psyr_4979 0.64 -1.6 5,905,240 - Psyr_4979 0.65 +0.5 5,905,267 + Psyr_4979 0.69 -0.9 5,905,290 + Psyr_4979 0.73 +2.6 5,905,291 - Psyr_4979 0.74 -0.4 5,905,299 - Psyr_4979 0.75 +2.6 5,905,306 + Psyr_4979 0.76 -1.5 5,905,307 - Psyr_4979 0.77 +0.6 5,905,309 + Psyr_4979 0.77 -1.0 5,905,413 + -0.7 5,905,437 + +0.6 5,905,442 - -1.9 5,905,473 - -0.5 5,905,550 + +0.0 5,905,624 + Psyr_4980 0.17 -2.6 5,905,648 - Psyr_4980 0.25 -0.8 5,905,648 - Psyr_4980 0.25 -0.8 5,905,659 - Psyr_4980 0.28 -0.3 5,905,668 + Psyr_4980 0.31 -1.2 5,905,669 - Psyr_4980 0.31 -2.0 5,905,669 - Psyr_4980 0.31 +0.4
Or see this region's nucleotide sequence