Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4840 and Psyr_4841 are separated by 54 nucleotides Psyr_4841 and Psyr_4842 are separated by 528 nucleotides
Psyr_4840: Psyr_4840 - thymidylate synthase, at 5,745,354 to 5,746,325
_4840
Psyr_4841: Psyr_4841 - Prolipoprotein diacylglyceryl transferase, at 5,746,380 to 5,747,192
_4841
Psyr_4842: Psyr_4842 - Phosphoenolpyruvate-protein phosphotransferase, at 5,747,721 to 5,750,000
_4842
Position (kb) 5746
5747
5748 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5746.418 kb on - strand at 5747.334 kb on - strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.360 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.362 kb on + strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.363 kb on - strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.364 kb on + strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.365 kb on - strand at 5747.387 kb on + strand at 5747.387 kb on + strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.388 kb on - strand at 5747.419 kb on + strand at 5747.419 kb on + strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.420 kb on - strand at 5747.446 kb on + strand at 5747.447 kb on - strand at 5747.447 kb on - strand at 5747.474 kb on - strand at 5747.520 kb on + strand at 5747.520 kb on + strand at 5747.521 kb on - strand at 5747.535 kb on + strand at 5747.535 kb on + strand at 5747.536 kb on - strand at 5747.536 kb on - strand at 5747.536 kb on - strand at 5747.616 kb on - strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.662 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.665 kb on + strand at 5747.666 kb on - strand at 5747.666 kb on - strand at 5747.677 kb on + strand at 5747.678 kb on - strand at 5747.712 kb on + strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.713 kb on - strand at 5747.715 kb on + strand at 5747.716 kb on - strand at 5747.716 kb on - strand at 5747.722 kb on + strand at 5748.056 kb on - strand, within Psyr_4842 at 5748.056 kb on - strand, within Psyr_4842 at 5748.107 kb on - strand, within Psyr_4842 at 5748.107 kb on - strand, within Psyr_4842 at 5748.172 kb on + strand, within Psyr_4842
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,746,418 - -0.6 5,747,334 - +0.6 5,747,360 + +0.8 5,747,360 + -0.3 5,747,360 + -0.7 5,747,360 + -0.3 5,747,360 + +0.1 5,747,360 + +0.6 5,747,360 + +0.4 5,747,360 + -0.8 5,747,362 + +0.7 5,747,362 + -0.1 5,747,362 + +0.2 5,747,362 + +0.0 5,747,362 + -1.3 5,747,362 + -0.4 5,747,362 + -0.1 5,747,362 + +0.3 5,747,362 + +0.1 5,747,362 + -0.1 5,747,362 + +0.4 5,747,362 + -0.4 5,747,362 + -0.9 5,747,363 - +1.3 5,747,363 - +0.3 5,747,363 - -1.1 5,747,363 - +0.1 5,747,363 - +0.1 5,747,363 - -0.3 5,747,363 - +0.6 5,747,363 - +0.6 5,747,363 - +0.4 5,747,363 - +0.7 5,747,363 - -2.1 5,747,363 - -0.2 5,747,363 - +0.5 5,747,364 + -0.0 5,747,364 + +0.7 5,747,364 + +0.3 5,747,364 + +0.3 5,747,364 + -0.6 5,747,364 + +0.7 5,747,364 + +0.3 5,747,364 + -0.9 5,747,364 + +0.1 5,747,364 + +0.2 5,747,364 + +0.4 5,747,364 + +2.1 5,747,364 + -0.3 5,747,364 + -0.0 5,747,364 + -0.3 5,747,364 + +0.0 5,747,365 - +0.7 5,747,365 - -0.4 5,747,365 - -1.8 5,747,365 - -0.4 5,747,365 - -0.1 5,747,365 - +0.1 5,747,365 - +1.9 5,747,365 - -0.7 5,747,365 - +1.2 5,747,365 - -0.1 5,747,365 - -0.0 5,747,387 + -1.0 5,747,387 + +0.8 5,747,388 - +0.0 5,747,388 - -0.4 5,747,388 - -0.4 5,747,388 - -0.4 5,747,388 - +0.4 5,747,419 + +0.2 5,747,419 + -0.4 5,747,420 - -0.8 5,747,420 - -0.8 5,747,420 - -0.8 5,747,420 - +0.6 5,747,420 - -0.5 5,747,420 - +0.6 5,747,446 + -0.5 5,747,447 - +1.4 5,747,447 - -0.1 5,747,474 - -0.0 5,747,520 + +1.0 5,747,520 + +0.7 5,747,521 - +0.9 5,747,535 + +0.5 5,747,535 + -0.6 5,747,536 - +0.1 5,747,536 - +0.7 5,747,536 - -0.2 5,747,616 - +0.4 5,747,662 + +0.8 5,747,662 + +0.2 5,747,662 + -0.4 5,747,662 + +0.7 5,747,662 + -0.6 5,747,662 + +1.3 5,747,662 + -0.3 5,747,665 + +0.5 5,747,665 + -1.3 5,747,665 + -1.4 5,747,665 + -0.1 5,747,666 - +0.2 5,747,666 - -0.3 5,747,677 + +0.1 5,747,678 - +0.6 5,747,712 + +0.5 5,747,713 - -0.2 5,747,713 - +1.6 5,747,713 - -2.3 5,747,713 - +1.0 5,747,715 + +0.3 5,747,716 - -0.0 5,747,716 - +0.2 5,747,722 + +0.7 5,748,056 - Psyr_4842 0.15 +2.6 5,748,056 - Psyr_4842 0.15 -1.3 5,748,107 - Psyr_4842 0.17 -0.4 5,748,107 - Psyr_4842 0.17 +1.0 5,748,172 + Psyr_4842 0.20 +0.5
Or see this region's nucleotide sequence